The complete chloroplast genome of the medicinal plant Angelica decursiva (Apiaceae) in Peucedani Radix
Angelica decursiva (Miquel) Franchet & Savatier (Apiaceae) has been used as a significant medicinal plant in East Asia. We determined its complete chloroplast genome for the first time in this study. The complete chloroplast was circularized and had a typical quadripartite structure genome of 14...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2016-01, Vol.1 (1), p.210-211 |
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| creator | Choi, Sun A. Kim, Ye Ji Lee, Woo Kyu Kim, Kyu Yeob Kim, Jong Hwan Seong, Rack Seon |
| description | Angelica decursiva (Miquel) Franchet & Savatier (Apiaceae) has been used as a significant medicinal plant in East Asia. We determined its complete chloroplast genome for the first time in this study. The complete chloroplast was circularized and had a typical quadripartite structure genome of 146 719 bp long including the large single copy region (LSC) of 93 256 bp, the small single copy region (SSC) of 17 497 bp and duplicated inverted regions (IRs) of 17 983 bp each. The total GC content was 37.56% and for the four structures it was 35.98% (LSC), 31.06% (SSC), and 44.83% (for each IR). There were a total of 113 genes, comprising four rRNAs, 29 tRNAs and 80 protein coding genes. In the phylogenetic analysis, A. decursiva was grouped with Seseli montanum. This study may contribute to authenticating the plant's correct use as medicine for health and provide an important genetic resource for phylogeny with related species. |
| doi_str_mv | 10.1080/23802359.2016.1155089 |
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We determined its complete chloroplast genome for the first time in this study. The complete chloroplast was circularized and had a typical quadripartite structure genome of 146 719 bp long including the large single copy region (LSC) of 93 256 bp, the small single copy region (SSC) of 17 497 bp and duplicated inverted regions (IRs) of 17 983 bp each. The total GC content was 37.56% and for the four structures it was 35.98% (LSC), 31.06% (SSC), and 44.83% (for each IR). There were a total of 113 genes, comprising four rRNAs, 29 tRNAs and 80 protein coding genes. In the phylogenetic analysis, A. decursiva was grouped with Seseli montanum. 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Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Angelica decursiva (Miquel) Franchet & Savatier (Apiaceae) has been used as a significant medicinal plant in East Asia. We determined its complete chloroplast genome for the first time in this study. The complete chloroplast was circularized and had a typical quadripartite structure genome of 146 719 bp long including the large single copy region (LSC) of 93 256 bp, the small single copy region (SSC) of 17 497 bp and duplicated inverted regions (IRs) of 17 983 bp each. The total GC content was 37.56% and for the four structures it was 35.98% (LSC), 31.06% (SSC), and 44.83% (for each IR). There were a total of 113 genes, comprising four rRNAs, 29 tRNAs and 80 protein coding genes. In the phylogenetic analysis, A. decursiva was grouped with Seseli montanum. This study may contribute to authenticating the plant's correct use as medicine for health and provide an important genetic resource for phylogeny with related species.</description><subject>Angelica decursiva</subject><subject>Apiaceae</subject><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>Genomes</subject><subject>Herbal medicine</subject><subject>Medicinal plants</subject><subject>Mitogenome Announcement</subject><subject>next-generation sequencing</subject><subject>Peucedani Radix</subject><subject>Phylogeny</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp9kctu1DAUhi0EolXpI4AssSmLGXydJBvEqOImVQKhsrZOnOMZV4kd7KTQt8fRTKvCgpWPfL5z-39CXnK25qxmb4WsmZC6WQvGN2vOtWZ184ScLv-rJfH0UXxCznO-Yaygsqqa6jk5kVJVUml1SnbXe6Q2DmOPUwn2fUxx7CFPdIchDkijo1NBBuy89QF6WrJhotuww95boB3aOWV_C_RiO3qwCPiG-kC_4Wyxg-Dpd-j87xfkmYM-4_nxPSM_Pn64vvy8uvr66cvl9mplVbOZVk5UVeuUFtDajeAMNchO81bxphEtB-7qTqJ1Vsm2qyU6LgCYbpsNU8gqJ8_Iu0PfcW7LzhbDlKA3Y_IDpDsTwZu_M8HvzS7emqJMGaFLg4tjgxR_zpgnM_hssS9XY5yzEapIyGrBVEFf_4PexDkVjRaqLgIzratC6QNlU8w5oXtYhjOzuGnu3TSLm-boZql79fiSh6p77wrw_gD44GIa4FdMfWcmuCseugTB-mzk_2f8AUx2r1k</recordid><startdate>20160101</startdate><enddate>20160101</enddate><creator>Choi, Sun A.</creator><creator>Kim, Ye Ji</creator><creator>Lee, Woo Kyu</creator><creator>Kim, Kyu Yeob</creator><creator>Kim, Jong Hwan</creator><creator>Seong, Rack Seon</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20160101</creationdate><title>The complete chloroplast genome of the medicinal plant Angelica decursiva (Apiaceae) in Peucedani Radix</title><author>Choi, Sun A. ; Kim, Ye Ji ; Lee, Woo Kyu ; Kim, Kyu Yeob ; Kim, Jong Hwan ; Seong, Rack Seon</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c496t-f277bf452abc6210e5a3d51b41992b1a1f8d3ecfc43bd83ef12aa05b9604e07f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Angelica decursiva</topic><topic>Apiaceae</topic><topic>chloroplast genome</topic><topic>Chloroplasts</topic><topic>Genomes</topic><topic>Herbal medicine</topic><topic>Medicinal plants</topic><topic>Mitogenome Announcement</topic><topic>next-generation sequencing</topic><topic>Peucedani Radix</topic><topic>Phylogeny</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Choi, Sun A.</creatorcontrib><creatorcontrib>Kim, Ye Ji</creatorcontrib><creatorcontrib>Lee, Woo Kyu</creatorcontrib><creatorcontrib>Kim, Kyu Yeob</creatorcontrib><creatorcontrib>Kim, Jong Hwan</creatorcontrib><creatorcontrib>Seong, Rack Seon</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>ProQuest Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Choi, Sun A.</au><au>Kim, Ye Ji</au><au>Lee, Woo Kyu</au><au>Kim, Kyu Yeob</au><au>Kim, Jong Hwan</au><au>Seong, Rack Seon</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete chloroplast genome of the medicinal plant Angelica decursiva (Apiaceae) in Peucedani Radix</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2016-01-01</date><risdate>2016</risdate><volume>1</volume><issue>1</issue><spage>210</spage><epage>211</epage><pages>210-211</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Angelica decursiva (Miquel) Franchet & Savatier (Apiaceae) has been used as a significant medicinal plant in East Asia. We determined its complete chloroplast genome for the first time in this study. The complete chloroplast was circularized and had a typical quadripartite structure genome of 146 719 bp long including the large single copy region (LSC) of 93 256 bp, the small single copy region (SSC) of 17 497 bp and duplicated inverted regions (IRs) of 17 983 bp each. The total GC content was 37.56% and for the four structures it was 35.98% (LSC), 31.06% (SSC), and 44.83% (for each IR). There were a total of 113 genes, comprising four rRNAs, 29 tRNAs and 80 protein coding genes. In the phylogenetic analysis, A. decursiva was grouped with Seseli montanum. This study may contribute to authenticating the plant's correct use as medicine for health and provide an important genetic resource for phylogeny with related species.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>33473454</pmid><doi>10.1080/23802359.2016.1155089</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Angelica decursiva Apiaceae chloroplast genome Chloroplasts Genomes Herbal medicine Medicinal plants Mitogenome Announcement next-generation sequencing Peucedani Radix Phylogeny |
| title | The complete chloroplast genome of the medicinal plant Angelica decursiva (Apiaceae) in Peucedani Radix |
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