Complete mitochondrial genome of two shorebirds (Charadriiformes: Scolopacidae), great knot (Calidris tenuirostris) and bar-tailed godwit (Limosa lapponica)
The mitochondrial genome of Calidris tenuirostris and Limosa lapponica were described using the whole mitochondrial genome obtained from Illumina Next-Generation Sequencing (NGS) technology. Total length of the mitogenome of C. tenuirostris was 16,732bp with slight A+T bias (55.3%). Genome size of L...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2020-07, Vol.5 (3), p.3516-3518 |
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| description | The mitochondrial genome of Calidris tenuirostris and Limosa lapponica were described using the whole mitochondrial genome obtained from Illumina Next-Generation Sequencing (NGS) technology. Total length of the mitogenome of C. tenuirostris was 16,732bp with slight A+T bias (55.3%). Genome size of L. lapponica was 16,773bp long and A+T biased (56.3%). Both gemones consisting of 2 rRNAs, 13 protein-coding genes, 22 tRNA genes and 1 non-coding regions. This is the first report of complete mitogenomes of these two shorebird species, (C. tenuirostris and of L. lapponica). We observed paraphyletic relationship among the species in the Family Scolopacidae. Also our result showed analogous patterns with the previous studies on the parallel relationships of shorebird species. This study provides basic genetic information for help in understanding phylogenetic relationships . within the Charadriiformes. |
| doi_str_mv | 10.1080/23802359.2020.1750976 |
| format | Article |
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Total length of the mitogenome of C. tenuirostris was 16,732bp with slight A+T bias (55.3%). Genome size of L. lapponica was 16,773bp long and A+T biased (56.3%). Both gemones consisting of 2 rRNAs, 13 protein-coding genes, 22 tRNA genes and 1 non-coding regions. This is the first report of complete mitogenomes of these two shorebird species, (C. tenuirostris and of L. lapponica). We observed paraphyletic relationship among the species in the Family Scolopacidae. Also our result showed analogous patterns with the previous studies on the parallel relationships of shorebird species. This study provides basic genetic information for help in understanding phylogenetic relationships . within the Charadriiformes.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2020.1750976</identifier><identifier>PMID: 33458225</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Birds ; Calidris tenuirostris ; Charadriiformes ; Genomes ; Limosa lapponica ; Mitochondria ; mitochondrial genome ; Mitogenome Announcement ; Next-Generation Sequencing ; Phylogeny ; Scolopacidae ; Species ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2020-07, Vol.5 (3), p.3516-3518</ispartof><rights>2020 National Institute of Biological Resources. Published by Informa UK Limited, trading as Taylor & Francis Group. 2020</rights><rights>2020 National Institute of Biological Resources. Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2020 National Institute of Biological Resources. Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2020 National Institute of Biological Resources. Published by Informa UK Limited, trading as Taylor & Francis Group. 2020 National Institute of Biological Resources</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c562t-29f0efd1a32fd6e11a31ddcfaf6caaea9cb610f5d346481b4936220d49bc52343</citedby><cites>FETCH-LOGICAL-c562t-29f0efd1a32fd6e11a31ddcfaf6caaea9cb610f5d346481b4936220d49bc52343</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783118/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783118/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,27479,27901,27902,53766,53768,59116,59117</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33458225$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kim, Sang-In</creatorcontrib><creatorcontrib>Lee, Mu-Yeong</creatorcontrib><creatorcontrib>Jeon, Hye Sook</creatorcontrib><creatorcontrib>Cha, Inhwan</creatorcontrib><creatorcontrib>Park, Hyoung Ook</creatorcontrib><creatorcontrib>Yeo, Kil-Wook</creatorcontrib><creatorcontrib>An, Junghwa</creatorcontrib><title>Complete mitochondrial genome of two shorebirds (Charadriiformes: Scolopacidae), great knot (Calidris tenuirostris) and bar-tailed godwit (Limosa lapponica)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>The mitochondrial genome of Calidris tenuirostris and Limosa lapponica were described using the whole mitochondrial genome obtained from Illumina Next-Generation Sequencing (NGS) technology. Total length of the mitogenome of C. tenuirostris was 16,732bp with slight A+T bias (55.3%). Genome size of L. lapponica was 16,773bp long and A+T biased (56.3%). Both gemones consisting of 2 rRNAs, 13 protein-coding genes, 22 tRNA genes and 1 non-coding regions. This is the first report of complete mitogenomes of these two shorebird species, (C. tenuirostris and of L. lapponica). We observed paraphyletic relationship among the species in the Family Scolopacidae. Also our result showed analogous patterns with the previous studies on the parallel relationships of shorebird species. This study provides basic genetic information for help in understanding phylogenetic relationships . within the Charadriiformes.</description><subject>Birds</subject><subject>Calidris tenuirostris</subject><subject>Charadriiformes</subject><subject>Genomes</subject><subject>Limosa lapponica</subject><subject>Mitochondria</subject><subject>mitochondrial genome</subject><subject>Mitogenome Announcement</subject><subject>Next-Generation Sequencing</subject><subject>Phylogeny</subject><subject>Scolopacidae</subject><subject>Species</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9ksmOEzEQhlsIxIzCPALIEpeJRAYvvXJAoIhlpEgcgLNV7SVxcHc1tkM078LD4pDMaIYDJ5ervvq91F8Uzxm9YrSlr7loKRdVd8Upz6mmol1TPyrOD_nFofD4XnxWXMS4pZSyWjRN1zwtzoQoq5bz6rz4vcRh8iYZMriEaoOjDg48WZsRB0PQkrRHEjcYTO-CjuRyuYEAGXIWw2DiG_JVoccJlNNg5q_IOhhI5MeIKbPgXUYjSWbcuYAx5c2cwKhJD2GRwHmjyRr13mV65QaMQDxME45OwfxZ8cSCj-bitM6K7x8_fFt-Xqy-fLpevl8tVFXztOCdpcZqBoJbXRuWA6a1smBrBWCgU33NqK20KOuyZX3ZiZpzqsuuVxUXpZgV10ddjbCVU3ADhBuJ4OTfBIa1hJCc8kbasjVVr5rK2r7sed11LS9Fx7XhulMGstbbo9a06wejlRlTAP9A9GFldBu5xl-yaVrBWJsFLk8CAX_uTExycFEZ72E0uIuSl03bNKysaUZf_oNucRfG_FWSV3m8TNR55rOiOlIqDyAGY-8uw6g82Ene2kke7CRPdsp9L-6_5K7r1jwZeHcE3HjwAuwxeC0T3HgMNsCoXJTi_2f8AZpm3Ms</recordid><startdate>20200702</startdate><enddate>20200702</enddate><creator>Kim, Sang-In</creator><creator>Lee, Mu-Yeong</creator><creator>Jeon, Hye Sook</creator><creator>Cha, Inhwan</creator><creator>Park, Hyoung Ook</creator><creator>Yeo, Kil-Wook</creator><creator>An, Junghwa</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20200702</creationdate><title>Complete mitochondrial genome of two shorebirds (Charadriiformes: Scolopacidae), great knot (Calidris tenuirostris) and bar-tailed godwit (Limosa lapponica)</title><author>Kim, Sang-In ; Lee, Mu-Yeong ; Jeon, Hye Sook ; Cha, Inhwan ; Park, Hyoung Ook ; Yeo, Kil-Wook ; An, Junghwa</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c562t-29f0efd1a32fd6e11a31ddcfaf6caaea9cb610f5d346481b4936220d49bc52343</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Birds</topic><topic>Calidris tenuirostris</topic><topic>Charadriiformes</topic><topic>Genomes</topic><topic>Limosa lapponica</topic><topic>Mitochondria</topic><topic>mitochondrial genome</topic><topic>Mitogenome Announcement</topic><topic>Next-Generation Sequencing</topic><topic>Phylogeny</topic><topic>Scolopacidae</topic><topic>Species</topic><topic>tRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kim, Sang-In</creatorcontrib><creatorcontrib>Lee, Mu-Yeong</creatorcontrib><creatorcontrib>Jeon, Hye Sook</creatorcontrib><creatorcontrib>Cha, Inhwan</creatorcontrib><creatorcontrib>Park, Hyoung Ook</creatorcontrib><creatorcontrib>Yeo, Kil-Wook</creatorcontrib><creatorcontrib>An, Junghwa</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. 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Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2020-07-02</date><risdate>2020</risdate><volume>5</volume><issue>3</issue><spage>3516</spage><epage>3518</epage><pages>3516-3518</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>The mitochondrial genome of Calidris tenuirostris and Limosa lapponica were described using the whole mitochondrial genome obtained from Illumina Next-Generation Sequencing (NGS) technology. Total length of the mitogenome of C. tenuirostris was 16,732bp with slight A+T bias (55.3%). Genome size of L. lapponica was 16,773bp long and A+T biased (56.3%). Both gemones consisting of 2 rRNAs, 13 protein-coding genes, 22 tRNA genes and 1 non-coding regions. This is the first report of complete mitogenomes of these two shorebird species, (C. tenuirostris and of L. lapponica). We observed paraphyletic relationship among the species in the Family Scolopacidae. 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| ispartof | Mitochondrial DNA. Part B. Resources, 2020-07, Vol.5 (3), p.3516-3518 |
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| subjects | Birds Calidris tenuirostris Charadriiformes Genomes Limosa lapponica Mitochondria mitochondrial genome Mitogenome Announcement Next-Generation Sequencing Phylogeny Scolopacidae Species tRNA |
| title | Complete mitochondrial genome of two shorebirds (Charadriiformes: Scolopacidae), great knot (Calidris tenuirostris) and bar-tailed godwit (Limosa lapponica) |
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