Diversity and structure of soil bacterial community in intertidal zone of Daliao River estuary, Northeast China
Soil samples from the intertidal zone of Daliao River, Northeast China, were collected in three seasons (autumn, L1; winter, L2; and spring, L3) to evaluate the diversity and structure of bacterial community using high-throughput sequencing. Soil physicochemical characteristics varied greatly with s...
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Veröffentlicht in: | Marine pollution bulletin 2021-02, Vol.163, p.111965-111965, Article 111965 |
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description | Soil samples from the intertidal zone of Daliao River, Northeast China, were collected in three seasons (autumn, L1; winter, L2; and spring, L3) to evaluate the diversity and structure of bacterial community using high-throughput sequencing. Soil physicochemical characteristics varied greatly with seasons, and the potential nitrification rates were detected in the range of 1.04–2.71 μg NO3−-N·g−1 dry soil·h−1 with the highest rate in spring (L3). Soil bacterial communities also differed seasonally, and nitrogen nutrients were the important variables affecting the bacterial communities as demonstrated by distance-based redundancy analysis and Mantel tests. Proteobacteria was the predominant phylum in soils showing a descending trend from L1 to L3. Woeseia and Ignatzschineria, both affiliating with Gammaproteobacteria, were the two most dominant genera, but they exerted different seasonal variations. The predicted functional profiles revealed 6 major nitrogen cycling processes, and the functional genes in relation to denitrification process were dominant in intertidal soils.
•Physicochemical properties of soils varied greatly with seasons.•Potential nitrification rates were significantly higher in spring and autumn.•Nitrogen nutrients were the important variables in shaping bacterial communities.•Woeseia and Ignatzschineria were the dominant genera with opposite variations.•Functional genes in relation to denitrification were dominant in intertidal soils. |
doi_str_mv | 10.1016/j.marpolbul.2020.111965 |
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•Physicochemical properties of soils varied greatly with seasons.•Potential nitrification rates were significantly higher in spring and autumn.•Nitrogen nutrients were the important variables in shaping bacterial communities.•Woeseia and Ignatzschineria were the dominant genera with opposite variations.•Functional genes in relation to denitrification were dominant in intertidal soils.</description><identifier>ISSN: 0025-326X</identifier><identifier>EISSN: 1879-3363</identifier><identifier>DOI: 10.1016/j.marpolbul.2020.111965</identifier><identifier>PMID: 33450443</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Autumn ; Bacteria ; Bacteria - genetics ; Bacterial community ; China ; Denitrification ; Estuaries ; Estuarine dynamics ; Estuary ; Genes ; Intertidal environment ; Intertidal zone ; Next-generation sequencing ; Nitrification ; Nitrogen ; Nitrogen - analysis ; Nitrogen cycle ; Nitrogen metabolism ; Nutrients ; Redundancy ; Rivers ; Seasonal variation ; Seasonal variations ; Seasons ; Soil ; Soil Microbiology ; Soil microorganisms ; Soil structure ; Soils ; Spring ; Spring (season)</subject><ispartof>Marine pollution bulletin, 2021-02, Vol.163, p.111965-111965, Article 111965</ispartof><rights>2020 Elsevier Ltd</rights><rights>Copyright © 2020 Elsevier Ltd. All rights reserved.</rights><rights>Copyright Elsevier BV Feb 2021</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c399t-9a3b4bdeb4310748b2cbe7cf341522e9aac5c79616e0892ea894e6083709c6713</citedby><cites>FETCH-LOGICAL-c399t-9a3b4bdeb4310748b2cbe7cf341522e9aac5c79616e0892ea894e6083709c6713</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.marpolbul.2020.111965$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3536,27903,27904,45974</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33450443$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Guo, Chaochen</creatorcontrib><creatorcontrib>Zhang, Xuwang</creatorcontrib><creatorcontrib>Luan, Shimeng</creatorcontrib><creatorcontrib>Zhou, Hao</creatorcontrib><creatorcontrib>Liu, Lifen</creatorcontrib><creatorcontrib>Qu, Yuanyuan</creatorcontrib><title>Diversity and structure of soil bacterial community in intertidal zone of Daliao River estuary, Northeast China</title><title>Marine pollution bulletin</title><addtitle>Mar Pollut Bull</addtitle><description>Soil samples from the intertidal zone of Daliao River, Northeast China, were collected in three seasons (autumn, L1; winter, L2; and spring, L3) to evaluate the diversity and structure of bacterial community using high-throughput sequencing. Soil physicochemical characteristics varied greatly with seasons, and the potential nitrification rates were detected in the range of 1.04–2.71 μg NO3−-N·g−1 dry soil·h−1 with the highest rate in spring (L3). Soil bacterial communities also differed seasonally, and nitrogen nutrients were the important variables affecting the bacterial communities as demonstrated by distance-based redundancy analysis and Mantel tests. Proteobacteria was the predominant phylum in soils showing a descending trend from L1 to L3. Woeseia and Ignatzschineria, both affiliating with Gammaproteobacteria, were the two most dominant genera, but they exerted different seasonal variations. The predicted functional profiles revealed 6 major nitrogen cycling processes, and the functional genes in relation to denitrification process were dominant in intertidal soils.
•Physicochemical properties of soils varied greatly with seasons.•Potential nitrification rates were significantly higher in spring and autumn.•Nitrogen nutrients were the important variables in shaping bacterial communities.•Woeseia and Ignatzschineria were the dominant genera with opposite variations.•Functional genes in relation to denitrification were dominant in intertidal soils.</description><subject>Autumn</subject><subject>Bacteria</subject><subject>Bacteria - genetics</subject><subject>Bacterial community</subject><subject>China</subject><subject>Denitrification</subject><subject>Estuaries</subject><subject>Estuarine dynamics</subject><subject>Estuary</subject><subject>Genes</subject><subject>Intertidal environment</subject><subject>Intertidal zone</subject><subject>Next-generation sequencing</subject><subject>Nitrification</subject><subject>Nitrogen</subject><subject>Nitrogen - analysis</subject><subject>Nitrogen cycle</subject><subject>Nitrogen metabolism</subject><subject>Nutrients</subject><subject>Redundancy</subject><subject>Rivers</subject><subject>Seasonal variation</subject><subject>Seasonal variations</subject><subject>Seasons</subject><subject>Soil</subject><subject>Soil Microbiology</subject><subject>Soil microorganisms</subject><subject>Soil structure</subject><subject>Soils</subject><subject>Spring</subject><subject>Spring (season)</subject><issn>0025-326X</issn><issn>1879-3363</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkV1LHDEUhkNRdGv9CzXgjRedbb5mMrmUtbUFsSAt9C5kMmcxy8xkzYew_fVmXPWiN0Ig8PKcN4c8CJ1RsqSENl83y9GErR-6PCwZYSWlVDX1B7SgrVQV5w0_QAtCWF1x1vw9Rh9j3BBCJJP0CB1zLmoiBF8gf-UeIUSXdthMPY4pZJtyAOzXOHo34M7YBMGZAVs_jnmaSTeVU9Lk-pL_89MzfmUGZzy-mwsxxJRN2H3Btz6kezAx4dW9m8wndLg2Q4TTl_sE_fn-7ffqR3Xz6_rn6vKmslypVCnDO9H10AlOiRRtx2wH0q65oDVjoIyxtZWqoQ2QVjEwrRLQkJZLomwjKT9BF_vebfAPuWyjRxctDIOZwOeomZBtrSRtVUHP_0M3PoepbKdZLZliQtC5UO4pG3yMAdZ6G1yRsNOU6NmJ3ug3J3p2ovdOyuTnl_7cjdC_zb1KKMDlHoDyIY8Ogo7WwWShdwFs0r137z7yBKKfoiQ</recordid><startdate>202102</startdate><enddate>202102</enddate><creator>Guo, Chaochen</creator><creator>Zhang, Xuwang</creator><creator>Luan, Shimeng</creator><creator>Zhou, Hao</creator><creator>Liu, Lifen</creator><creator>Qu, Yuanyuan</creator><general>Elsevier Ltd</general><general>Elsevier BV</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7ST</scope><scope>7T7</scope><scope>7TN</scope><scope>7TV</scope><scope>7U7</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>SOI</scope><scope>7X8</scope></search><sort><creationdate>202102</creationdate><title>Diversity and structure of soil bacterial community in intertidal zone of Daliao River estuary, Northeast China</title><author>Guo, Chaochen ; Zhang, Xuwang ; Luan, Shimeng ; Zhou, Hao ; Liu, Lifen ; Qu, Yuanyuan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c399t-9a3b4bdeb4310748b2cbe7cf341522e9aac5c79616e0892ea894e6083709c6713</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Autumn</topic><topic>Bacteria</topic><topic>Bacteria - genetics</topic><topic>Bacterial community</topic><topic>China</topic><topic>Denitrification</topic><topic>Estuaries</topic><topic>Estuarine dynamics</topic><topic>Estuary</topic><topic>Genes</topic><topic>Intertidal environment</topic><topic>Intertidal zone</topic><topic>Next-generation sequencing</topic><topic>Nitrification</topic><topic>Nitrogen</topic><topic>Nitrogen - analysis</topic><topic>Nitrogen cycle</topic><topic>Nitrogen metabolism</topic><topic>Nutrients</topic><topic>Redundancy</topic><topic>Rivers</topic><topic>Seasonal variation</topic><topic>Seasonal variations</topic><topic>Seasons</topic><topic>Soil</topic><topic>Soil Microbiology</topic><topic>Soil microorganisms</topic><topic>Soil structure</topic><topic>Soils</topic><topic>Spring</topic><topic>Spring (season)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Guo, Chaochen</creatorcontrib><creatorcontrib>Zhang, Xuwang</creatorcontrib><creatorcontrib>Luan, Shimeng</creatorcontrib><creatorcontrib>Zhou, Hao</creatorcontrib><creatorcontrib>Liu, Lifen</creatorcontrib><creatorcontrib>Qu, Yuanyuan</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Oceanic Abstracts</collection><collection>Pollution Abstracts</collection><collection>Toxicology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Marine pollution bulletin</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Guo, Chaochen</au><au>Zhang, Xuwang</au><au>Luan, Shimeng</au><au>Zhou, Hao</au><au>Liu, Lifen</au><au>Qu, Yuanyuan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Diversity and structure of soil bacterial community in intertidal zone of Daliao River estuary, Northeast China</atitle><jtitle>Marine pollution bulletin</jtitle><addtitle>Mar Pollut Bull</addtitle><date>2021-02</date><risdate>2021</risdate><volume>163</volume><spage>111965</spage><epage>111965</epage><pages>111965-111965</pages><artnum>111965</artnum><issn>0025-326X</issn><eissn>1879-3363</eissn><abstract>Soil samples from the intertidal zone of Daliao River, Northeast China, were collected in three seasons (autumn, L1; winter, L2; and spring, L3) to evaluate the diversity and structure of bacterial community using high-throughput sequencing. Soil physicochemical characteristics varied greatly with seasons, and the potential nitrification rates were detected in the range of 1.04–2.71 μg NO3−-N·g−1 dry soil·h−1 with the highest rate in spring (L3). Soil bacterial communities also differed seasonally, and nitrogen nutrients were the important variables affecting the bacterial communities as demonstrated by distance-based redundancy analysis and Mantel tests. Proteobacteria was the predominant phylum in soils showing a descending trend from L1 to L3. Woeseia and Ignatzschineria, both affiliating with Gammaproteobacteria, were the two most dominant genera, but they exerted different seasonal variations. The predicted functional profiles revealed 6 major nitrogen cycling processes, and the functional genes in relation to denitrification process were dominant in intertidal soils.
•Physicochemical properties of soils varied greatly with seasons.•Potential nitrification rates were significantly higher in spring and autumn.•Nitrogen nutrients were the important variables in shaping bacterial communities.•Woeseia and Ignatzschineria were the dominant genera with opposite variations.•Functional genes in relation to denitrification were dominant in intertidal soils.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>33450443</pmid><doi>10.1016/j.marpolbul.2020.111965</doi><tpages>1</tpages></addata></record> |
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subjects | Autumn Bacteria Bacteria - genetics Bacterial community China Denitrification Estuaries Estuarine dynamics Estuary Genes Intertidal environment Intertidal zone Next-generation sequencing Nitrification Nitrogen Nitrogen - analysis Nitrogen cycle Nitrogen metabolism Nutrients Redundancy Rivers Seasonal variation Seasonal variations Seasons Soil Soil Microbiology Soil microorganisms Soil structure Soils Spring Spring (season) |
title | Diversity and structure of soil bacterial community in intertidal zone of Daliao River estuary, Northeast China |
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