Halalkalirubrum salinum gen. nov., sp. nov., a halophilic archaeon isolated from a saline lake
A novel extremely halophilic archaeon, strain N1521 T , was isolated from a saline lake in Tibet, China. Cells of the strain were pleomorphic and Gram-stain-negative. It produced red pigments. Growth was observed at 4–42 °C (optimum, 37 °C), pH 7.0–10.5 (optimum, 8.0–9.5), NaCl 11%–25% (optimum, 15%...
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| creator | Zuo, Zhenqiang Zhao, Dahe Zhou, Jian Han, Jing Xiang, Hua |
| description | A novel extremely halophilic archaeon, strain N1521
T
, was isolated from a saline lake in Tibet, China. Cells of the strain were pleomorphic and Gram-stain-negative. It produced red pigments. Growth was observed at 4–42 °C (optimum, 37 °C), pH 7.0–10.5 (optimum, 8.0–9.5), NaCl 11%–25% (optimum, 15%) and in the presence of 0–0.1 M MgCl
2
(optimum, 0.05 M) in aerobic conditions. The minimum NaCl concentration that prevented cell lysis was 2% (w/v). The major polar lipids of strain N1521
T
were phosphatidylglycerol sulfate, phosphatidylglycerol phosphate methyl ester, phosphatidylglycerol and an unidentified glycolipid. The DNA G + C content was 58.37 mol%. According to 16S rRNA gene sequence comparisons, strain N1521
T
revealed the highest sequence similarity to
Haloprofundus halophilus
NK23
T
(91.38%) and
Halogranum amylolyticum
TNN58
T
(91.00%), and low sequence similarities ( |
| doi_str_mv | 10.1007/s10482-020-01502-6 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2475093385</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2475093385</sourcerecordid><originalsourceid>FETCH-LOGICAL-c375t-5d9a081f8249af51d3b9efaaa54721a951927b51ecb5965c89012603b5bf20f13</originalsourceid><addsrcrecordid>eNp9kD1PwzAQhi0EoqXwBxhQJBYGUs52nMQjqoAiIbHAinVJnTatEwe7QeLfY_oBEgPTneXn3rMfQs4pjClAduMpJDmLgUEMVACL0wMypCJjsUylPCRDAOBxChkbkBPvl-Eo0zw7JgPOeS65YEPyNkWDZoWmdn3h-ibyoW1Dnet2HLX2Y3wd-W7fYbRAY7tFbeoyQlcuUNs2qr01uNazqHK2CcwmQkcGV_qUHFVovD7b1RF5vb97mUzjp-eHx8ntU1zyTKxjMZMIOa1ylkisBJ3xQuoKEUWSMYpSUMmyQlBdFkKmoswlUJYCL0RRMagoH5GrbW7n7Huv_Vo1tS-1Mdhq23vFkkyADL8WAb38gy5t79rwukDlIIM7yAPFtlTprPdOV6pzdYPuU1FQ3_bV1r4K9tXGvkrD0MUuui8aPfsZ2esOAN8CPly1c-1-d_8T-wXyp42g</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2480996908</pqid></control><display><type>article</type><title>Halalkalirubrum salinum gen. nov., sp. nov., a halophilic archaeon isolated from a saline lake</title><source>SpringerLink Journals - AutoHoldings</source><creator>Zuo, Zhenqiang ; Zhao, Dahe ; Zhou, Jian ; Han, Jing ; Xiang, Hua</creator><creatorcontrib>Zuo, Zhenqiang ; Zhao, Dahe ; Zhou, Jian ; Han, Jing ; Xiang, Hua</creatorcontrib><description>A novel extremely halophilic archaeon, strain N1521
T
, was isolated from a saline lake in Tibet, China. Cells of the strain were pleomorphic and Gram-stain-negative. It produced red pigments. Growth was observed at 4–42 °C (optimum, 37 °C), pH 7.0–10.5 (optimum, 8.0–9.5), NaCl 11%–25% (optimum, 15%) and in the presence of 0–0.1 M MgCl
2
(optimum, 0.05 M) in aerobic conditions. The minimum NaCl concentration that prevented cell lysis was 2% (w/v). The major polar lipids of strain N1521
T
were phosphatidylglycerol sulfate, phosphatidylglycerol phosphate methyl ester, phosphatidylglycerol and an unidentified glycolipid. The DNA G + C content was 58.37 mol%. According to 16S rRNA gene sequence comparisons, strain N1521
T
revealed the highest sequence similarity to
Haloprofundus halophilus
NK23
T
(91.38%) and
Halogranum amylolyticum
TNN58
T
(91.00%), and low sequence similarities (< 91%) with other genera in the order
Haloferacales
. Phylogenetic analysis based on the 16S rRNA gene and
rpoB
′ gene sequence showed that strain N1521
T
was distinct from the members of the order
Haloferacales
. The digital DNA–DNA hybridization, average nucleotide identity and average amino acid identity values calculated from whole genome-sequence comparison between strain N1521
T
and the members of the order
Haloferacales
were in the ranges of 15.1–18.2%, 68.8–73.0%, and 58.4–63.9%, respectively. Phylogenetic tree reconstructions based on the whole-genome sequences revealed that strain N1521
T
was closer to the members of the family
Halorubraceae
. Based on the data obtained, strain N1521
T
is thus considered to represent a novel species of a new genus within the family
Halorubraceae
, for which the name
Halalkalirubrum salinum
gen. nov., sp. nov. is proposed. The type strain is N1521
T
(= CGMCC 1.16693 = JCM 33785).</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-020-01502-6</identifier><identifier>PMID: 33389352</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Aerobic conditions ; Amino acid sequence ; Amino acids ; Biomedical and Life Sciences ; Deoxyribonucleic acid ; DNA ; Gene sequencing ; Genomes ; Gram-negative bacteria ; Halalkalirubrum salinum ; Halorubraceae ; Hybridization ; Life Sciences ; Lipids ; Lysis ; Magnesium chloride ; Medical Microbiology ; Microbiology ; New genera ; New species ; Nucleotide sequence ; Nucleotides ; Original Paper ; Phosphatidylglycerol ; Phylogenetics ; Phylogeny ; Pigments ; Plant Sciences ; Red pigments ; RpoB protein ; rRNA 16S ; Saline environments ; Salt lakes ; Sodium chloride ; Soil Science & Conservation</subject><ispartof>Antonie van Leeuwenhoek, 2021, Vol.114 (1), p.83-94</ispartof><rights>Springer Nature Switzerland AG 2021</rights><rights>Springer Nature Switzerland AG 2021.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-5d9a081f8249af51d3b9efaaa54721a951927b51ecb5965c89012603b5bf20f13</citedby><cites>FETCH-LOGICAL-c375t-5d9a081f8249af51d3b9efaaa54721a951927b51ecb5965c89012603b5bf20f13</cites><orcidid>0000-0003-0496-2437</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-020-01502-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-020-01502-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27923,27924,41487,42556,51318</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33389352$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zuo, Zhenqiang</creatorcontrib><creatorcontrib>Zhao, Dahe</creatorcontrib><creatorcontrib>Zhou, Jian</creatorcontrib><creatorcontrib>Han, Jing</creatorcontrib><creatorcontrib>Xiang, Hua</creatorcontrib><title>Halalkalirubrum salinum gen. nov., sp. nov., a halophilic archaeon isolated from a saline lake</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>A novel extremely halophilic archaeon, strain N1521
T
, was isolated from a saline lake in Tibet, China. Cells of the strain were pleomorphic and Gram-stain-negative. It produced red pigments. Growth was observed at 4–42 °C (optimum, 37 °C), pH 7.0–10.5 (optimum, 8.0–9.5), NaCl 11%–25% (optimum, 15%) and in the presence of 0–0.1 M MgCl
2
(optimum, 0.05 M) in aerobic conditions. The minimum NaCl concentration that prevented cell lysis was 2% (w/v). The major polar lipids of strain N1521
T
were phosphatidylglycerol sulfate, phosphatidylglycerol phosphate methyl ester, phosphatidylglycerol and an unidentified glycolipid. The DNA G + C content was 58.37 mol%. According to 16S rRNA gene sequence comparisons, strain N1521
T
revealed the highest sequence similarity to
Haloprofundus halophilus
NK23
T
(91.38%) and
Halogranum amylolyticum
TNN58
T
(91.00%), and low sequence similarities (< 91%) with other genera in the order
Haloferacales
. Phylogenetic analysis based on the 16S rRNA gene and
rpoB
′ gene sequence showed that strain N1521
T
was distinct from the members of the order
Haloferacales
. The digital DNA–DNA hybridization, average nucleotide identity and average amino acid identity values calculated from whole genome-sequence comparison between strain N1521
T
and the members of the order
Haloferacales
were in the ranges of 15.1–18.2%, 68.8–73.0%, and 58.4–63.9%, respectively. Phylogenetic tree reconstructions based on the whole-genome sequences revealed that strain N1521
T
was closer to the members of the family
Halorubraceae
. Based on the data obtained, strain N1521
T
is thus considered to represent a novel species of a new genus within the family
Halorubraceae
, for which the name
Halalkalirubrum salinum
gen. nov., sp. nov. is proposed. The type strain is N1521
T
(= CGMCC 1.16693 = JCM 33785).</description><subject>Aerobic conditions</subject><subject>Amino acid sequence</subject><subject>Amino acids</subject><subject>Biomedical and Life Sciences</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Gene sequencing</subject><subject>Genomes</subject><subject>Gram-negative bacteria</subject><subject>Halalkalirubrum salinum</subject><subject>Halorubraceae</subject><subject>Hybridization</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Lysis</subject><subject>Magnesium chloride</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>New genera</subject><subject>New species</subject><subject>Nucleotide sequence</subject><subject>Nucleotides</subject><subject>Original Paper</subject><subject>Phosphatidylglycerol</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Pigments</subject><subject>Plant Sciences</subject><subject>Red pigments</subject><subject>RpoB protein</subject><subject>rRNA 16S</subject><subject>Saline environments</subject><subject>Salt lakes</subject><subject>Sodium chloride</subject><subject>Soil Science & Conservation</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kD1PwzAQhi0EoqXwBxhQJBYGUs52nMQjqoAiIbHAinVJnTatEwe7QeLfY_oBEgPTneXn3rMfQs4pjClAduMpJDmLgUEMVACL0wMypCJjsUylPCRDAOBxChkbkBPvl-Eo0zw7JgPOeS65YEPyNkWDZoWmdn3h-ibyoW1Dnet2HLX2Y3wd-W7fYbRAY7tFbeoyQlcuUNs2qr01uNazqHK2CcwmQkcGV_qUHFVovD7b1RF5vb97mUzjp-eHx8ntU1zyTKxjMZMIOa1ylkisBJ3xQuoKEUWSMYpSUMmyQlBdFkKmoswlUJYCL0RRMagoH5GrbW7n7Huv_Vo1tS-1Mdhq23vFkkyADL8WAb38gy5t79rwukDlIIM7yAPFtlTprPdOV6pzdYPuU1FQ3_bV1r4K9tXGvkrD0MUuui8aPfsZ2esOAN8CPly1c-1-d_8T-wXyp42g</recordid><startdate>2021</startdate><enddate>2021</enddate><creator>Zuo, Zhenqiang</creator><creator>Zhao, Dahe</creator><creator>Zhou, Jian</creator><creator>Han, Jing</creator><creator>Xiang, Hua</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-0496-2437</orcidid></search><sort><creationdate>2021</creationdate><title>Halalkalirubrum salinum gen. nov., sp. nov., a halophilic archaeon isolated from a saline lake</title><author>Zuo, Zhenqiang ; Zhao, Dahe ; Zhou, Jian ; Han, Jing ; Xiang, Hua</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-5d9a081f8249af51d3b9efaaa54721a951927b51ecb5965c89012603b5bf20f13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Aerobic conditions</topic><topic>Amino acid sequence</topic><topic>Amino acids</topic><topic>Biomedical and Life Sciences</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Gene sequencing</topic><topic>Genomes</topic><topic>Gram-negative bacteria</topic><topic>Halalkalirubrum salinum</topic><topic>Halorubraceae</topic><topic>Hybridization</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Lysis</topic><topic>Magnesium chloride</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>New genera</topic><topic>New species</topic><topic>Nucleotide sequence</topic><topic>Nucleotides</topic><topic>Original Paper</topic><topic>Phosphatidylglycerol</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Pigments</topic><topic>Plant Sciences</topic><topic>Red pigments</topic><topic>RpoB protein</topic><topic>rRNA 16S</topic><topic>Saline environments</topic><topic>Salt lakes</topic><topic>Sodium chloride</topic><topic>Soil Science & Conservation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zuo, Zhenqiang</creatorcontrib><creatorcontrib>Zhao, Dahe</creatorcontrib><creatorcontrib>Zhou, Jian</creatorcontrib><creatorcontrib>Han, Jing</creatorcontrib><creatorcontrib>Xiang, Hua</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology 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Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zuo, Zhenqiang</au><au>Zhao, Dahe</au><au>Zhou, Jian</au><au>Han, Jing</au><au>Xiang, Hua</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Halalkalirubrum salinum gen. nov., sp. nov., a halophilic archaeon isolated from a saline lake</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2021</date><risdate>2021</risdate><volume>114</volume><issue>1</issue><spage>83</spage><epage>94</epage><pages>83-94</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>A novel extremely halophilic archaeon, strain N1521
T
, was isolated from a saline lake in Tibet, China. Cells of the strain were pleomorphic and Gram-stain-negative. It produced red pigments. Growth was observed at 4–42 °C (optimum, 37 °C), pH 7.0–10.5 (optimum, 8.0–9.5), NaCl 11%–25% (optimum, 15%) and in the presence of 0–0.1 M MgCl
2
(optimum, 0.05 M) in aerobic conditions. The minimum NaCl concentration that prevented cell lysis was 2% (w/v). The major polar lipids of strain N1521
T
were phosphatidylglycerol sulfate, phosphatidylglycerol phosphate methyl ester, phosphatidylglycerol and an unidentified glycolipid. The DNA G + C content was 58.37 mol%. According to 16S rRNA gene sequence comparisons, strain N1521
T
revealed the highest sequence similarity to
Haloprofundus halophilus
NK23
T
(91.38%) and
Halogranum amylolyticum
TNN58
T
(91.00%), and low sequence similarities (< 91%) with other genera in the order
Haloferacales
. Phylogenetic analysis based on the 16S rRNA gene and
rpoB
′ gene sequence showed that strain N1521
T
was distinct from the members of the order
Haloferacales
. The digital DNA–DNA hybridization, average nucleotide identity and average amino acid identity values calculated from whole genome-sequence comparison between strain N1521
T
and the members of the order
Haloferacales
were in the ranges of 15.1–18.2%, 68.8–73.0%, and 58.4–63.9%, respectively. Phylogenetic tree reconstructions based on the whole-genome sequences revealed that strain N1521
T
was closer to the members of the family
Halorubraceae
. Based on the data obtained, strain N1521
T
is thus considered to represent a novel species of a new genus within the family
Halorubraceae
, for which the name
Halalkalirubrum salinum
gen. nov., sp. nov. is proposed. The type strain is N1521
T
(= CGMCC 1.16693 = JCM 33785).</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>33389352</pmid><doi>10.1007/s10482-020-01502-6</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0003-0496-2437</orcidid></addata></record> |
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| ispartof | Antonie van Leeuwenhoek, 2021, Vol.114 (1), p.83-94 |
| issn | 0003-6072 1572-9699 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2475093385 |
| source | SpringerLink Journals - AutoHoldings |
| subjects | Aerobic conditions Amino acid sequence Amino acids Biomedical and Life Sciences Deoxyribonucleic acid DNA Gene sequencing Genomes Gram-negative bacteria Halalkalirubrum salinum Halorubraceae Hybridization Life Sciences Lipids Lysis Magnesium chloride Medical Microbiology Microbiology New genera New species Nucleotide sequence Nucleotides Original Paper Phosphatidylglycerol Phylogenetics Phylogeny Pigments Plant Sciences Red pigments RpoB protein rRNA 16S Saline environments Salt lakes Sodium chloride Soil Science & Conservation |
| title | Halalkalirubrum salinum gen. nov., sp. nov., a halophilic archaeon isolated from a saline lake |
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