The complete chloroplast genome of Torreya nucifera (Taxaceae) and phylogenetic analysis
Torreya nucifera (L.) Siebold & Zucc. (Taxaceae) is a tertiary relict tree species with a distribution that is limited to South Korea and Japan. In the present study, the complete chloroplast (cp) genome of T. nucifera was sequenced and analyzed. The genome was 136,985 bp in length and contained...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2019-07, Vol.4 (2), p.2537-2538 |
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| creator | Shin, Sookyung Kim, Sang-Chul Hong, Kyung Nak Kang, Hyesoon Lee, Jei-Wan |
| description | Torreya nucifera (L.) Siebold & Zucc. (Taxaceae) is a tertiary relict tree species with a distribution that is limited to South Korea and Japan. In the present study, the complete chloroplast (cp) genome of T. nucifera was sequenced and analyzed. The genome was 136,985 bp in length and contained 118 genes, including 82 protein-coding genes, 33 tRNA genes, and 4 rRNA genes. Fifteen of the genes contained a single intron, whereas ycf3 contained two introns and there were no inverted repeat sequences in the genome. Phylogenetic analysis supported the monophyly of Torreya species within the Taxaceae and T. nucifera was closely related to its congener T. grandis. |
| doi_str_mv | 10.1080/23802359.2019.1640091 |
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Siebold & Zucc. (Taxaceae) is a tertiary relict tree species with a distribution that is limited to South Korea and Japan. In the present study, the complete chloroplast (cp) genome of T. nucifera was sequenced and analyzed. The genome was 136,985 bp in length and contained 118 genes, including 82 protein-coding genes, 33 tRNA genes, and 4 rRNA genes. Fifteen of the genes contained a single intron, whereas ycf3 contained two introns and there were no inverted repeat sequences in the genome. Phylogenetic analysis supported the monophyly of Torreya species within the Taxaceae and T. nucifera was closely related to its congener T. grandis.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2019.1640091</identifier><identifier>PMID: 33365615</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>chloroplast genome ; Chloroplasts ; Congeners ; conifer ; Genomes ; Geographical distribution ; Introns ; Inverted repeat ; Mitogenome Announcement ; Phylogenetics ; Phylogeny ; rRNA ; Taxaceae ; Torreya nucifera ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2019-07, Vol.4 (2), p.2537-2538</ispartof><rights>2019 National Institute of Forest Science of South Korea. Published by Informa UK Limited, trading as Taylor & Francis Group. 2019</rights><rights>2019 National Institute of Forest Science of South Korea. Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2019 National Institute of Forest Science of South Korea. Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2019 National Institute of Forest Science of South Korea. 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Phylogenetic analysis supported the monophyly of Torreya species within the Taxaceae and T. nucifera was closely related to its congener T. grandis.</description><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>Congeners</subject><subject>conifer</subject><subject>Genomes</subject><subject>Geographical distribution</subject><subject>Introns</subject><subject>Inverted repeat</subject><subject>Mitogenome Announcement</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>rRNA</subject><subject>Taxaceae</subject><subject>Torreya nucifera</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kk1vEzEQhlcIRKvSnwBaiUs5JIzttb2-IFDFR6VKXILEzfLa42Qj7zrYu0D-PQ5Jq5YDJ49mHr8ez7xV9ZLAkkALbylrgTKulhSIWhLRACjypDo_5BeHwtMH8Vl1mfMWAIhgUir5vDpjjAkuCD-vvq82WNs47AJOJdiEmOIumDzVaxzjgHX09SqmhHtTj7PtPSZTX63Mb2PR4JvajK7ebfYhFhyn3paECfvc5xfVM29CxsvTeVF9-_Rxdf1lcfv18831h9uF5YJOC9awjnDnOsFVI1Aqo6QUCFRydNJ70XnVtIwKAZS2DpToOEUhuMTOMeLYRXVz1HXRbPUu9YNJex1Nr_8mYlprk0pjAXUHLSszKFpSNlYqRTrbMIpElrTnULTeHbV2czegszhOyYRHoo8rY7_R6_hTSwlCQVMErk4CKf6YMU966LPFEMyIcc6aNpI1ICmjBX39D7qNcyrDKxTjFMpKJS8UP1I2xZwT-vtmCOiDFfSdFfTBCvpkhXLv1cOf3N-6W3wB3h-BfvQxDeZXTMHpyZRNJp_MaPus2f_f-AMe1MDk</recordid><startdate>20190703</startdate><enddate>20190703</enddate><creator>Shin, Sookyung</creator><creator>Kim, Sang-Chul</creator><creator>Hong, Kyung Nak</creator><creator>Kang, Hyesoon</creator><creator>Lee, Jei-Wan</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20190703</creationdate><title>The complete chloroplast genome of Torreya nucifera (Taxaceae) and phylogenetic analysis</title><author>Shin, Sookyung ; Kim, Sang-Chul ; Hong, Kyung Nak ; Kang, Hyesoon ; Lee, Jei-Wan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c562t-343b15ddb65946e79a9776e0275ed7ff6bf94832660228d096b52e6657ebd31d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>chloroplast genome</topic><topic>Chloroplasts</topic><topic>Congeners</topic><topic>conifer</topic><topic>Genomes</topic><topic>Geographical distribution</topic><topic>Introns</topic><topic>Inverted repeat</topic><topic>Mitogenome Announcement</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>rRNA</topic><topic>Taxaceae</topic><topic>Torreya nucifera</topic><topic>tRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shin, Sookyung</creatorcontrib><creatorcontrib>Kim, Sang-Chul</creatorcontrib><creatorcontrib>Hong, Kyung Nak</creatorcontrib><creatorcontrib>Kang, Hyesoon</creatorcontrib><creatorcontrib>Lee, Jei-Wan</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library (ProQuest Database)</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Access via ProQuest (Open Access)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. 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| subjects | chloroplast genome Chloroplasts Congeners conifer Genomes Geographical distribution Introns Inverted repeat Mitogenome Announcement Phylogenetics Phylogeny rRNA Taxaceae Torreya nucifera tRNA |
| title | The complete chloroplast genome of Torreya nucifera (Taxaceae) and phylogenetic analysis |
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