Design of a multi-epitope subunit vaccine for immune-protection against Leishmania parasite
Visceral Leishmaniasis (VL) is an insect-borne neglected disease caused by the protozoan parasite Leishmania donovani. In the absence of a commercial vaccine against VL, chemotherapy is currently the only option used for the treatment of VL. Vaccination has been considered as the most effective and...
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Veröffentlicht in: | Pathogens and global health 2020-11, Vol.114 (8), p.471-481 |
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creator | Yadav, Sunita Prakash, Jay Shukla, Harish Das, Kanhu Charan Tripathi, Timir Dubey, Vikash Kumar |
description | Visceral Leishmaniasis (VL) is an insect-borne neglected disease caused by the protozoan parasite Leishmania donovani. In the absence of a commercial vaccine against VL, chemotherapy is currently the only option used for the treatment of VL. Vaccination has been considered as the most effective and powerful tool for complete eradication and control of infectious diseases. In this study, we aimed to design a peptide-based vaccine against L. donovani using immuno-bioinformatic tools. We identified 6 HTL, 18 CTL, and 25 B-cell epitopes from three hypothetical membrane proteins of L. donovani. All these epitopes were used to make a vaccine construct along with linkers. An adjuvant was also added at the N-terminal to enhance its immunogenicity. After that, we checked the quality of this vaccine construct and found that it is nontoxic, nonallergic, and thermally stable. A 3D structure of the vaccine construct was also generated by homology modeling to evaluate its interaction with innate immune receptors (TLR). Molecular docking was performed, which confirmed its binding with a toll-like receptor-2 (TLR-2). The stability of vaccine-TLR-2 complex and underlying interactions were evaluated using molecular dynamic simulation. Lastly, we carried out in silico cloning to check the expression of the final designed vaccine. The designed vaccine construct needs further experimental and clinical investigations to develop it as a safe and effective vaccine against VL infection. |
doi_str_mv | 10.1080/20477724.2020.1842976 |
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In the absence of a commercial vaccine against VL, chemotherapy is currently the only option used for the treatment of VL. Vaccination has been considered as the most effective and powerful tool for complete eradication and control of infectious diseases. In this study, we aimed to design a peptide-based vaccine against L. donovani using immuno-bioinformatic tools. We identified 6 HTL, 18 CTL, and 25 B-cell epitopes from three hypothetical membrane proteins of L. donovani. All these epitopes were used to make a vaccine construct along with linkers. An adjuvant was also added at the N-terminal to enhance its immunogenicity. After that, we checked the quality of this vaccine construct and found that it is nontoxic, nonallergic, and thermally stable. A 3D structure of the vaccine construct was also generated by homology modeling to evaluate its interaction with innate immune receptors (TLR). Molecular docking was performed, which confirmed its binding with a toll-like receptor-2 (TLR-2). The stability of vaccine-TLR-2 complex and underlying interactions were evaluated using molecular dynamic simulation. Lastly, we carried out in silico cloning to check the expression of the final designed vaccine. The designed vaccine construct needs further experimental and clinical investigations to develop it as a safe and effective vaccine against VL infection.</description><identifier>ISSN: 2047-7724</identifier><identifier>EISSN: 2047-7732</identifier><identifier>DOI: 10.1080/20477724.2020.1842976</identifier><identifier>PMID: 33161887</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>epitopes ; Epitopes, B-Lymphocyte - immunology ; Epitopes, T-Lymphocyte - immunology ; Hypothetical proteins ; Leishmania ; Leishmaniasis - prevention & control ; MHC ; Molecular Docking Simulation ; molecular dynamics simulation, Immunoinformatics ; peptide vaccine ; Protozoan Vaccines - immunology ; Vaccines, Subunit - immunology ; visceral leishmaniasis</subject><ispartof>Pathogens and global health, 2020-11, Vol.114 (8), p.471-481</ispartof><rights>2020 Informa UK Limited, trading as Taylor & Francis Group 2020</rights><rights>2020 Informa UK Limited, trading as Taylor & Francis Group 2020 Informa UK Limited, trading as Taylor & Francis Group</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c468t-cc25886bbae34ac4341c9e8f822e31f09c9d4c9488af212576c486c8544c333f3</citedby><cites>FETCH-LOGICAL-c468t-cc25886bbae34ac4341c9e8f822e31f09c9d4c9488af212576c486c8544c333f3</cites><orcidid>0000-0001-5559-289X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7759290/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7759290/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33161887$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yadav, Sunita</creatorcontrib><creatorcontrib>Prakash, Jay</creatorcontrib><creatorcontrib>Shukla, Harish</creatorcontrib><creatorcontrib>Das, Kanhu Charan</creatorcontrib><creatorcontrib>Tripathi, Timir</creatorcontrib><creatorcontrib>Dubey, Vikash Kumar</creatorcontrib><title>Design of a multi-epitope subunit vaccine for immune-protection against Leishmania parasite</title><title>Pathogens and global health</title><addtitle>Pathog Glob Health</addtitle><description>Visceral Leishmaniasis (VL) is an insect-borne neglected disease caused by the protozoan parasite Leishmania donovani. In the absence of a commercial vaccine against VL, chemotherapy is currently the only option used for the treatment of VL. Vaccination has been considered as the most effective and powerful tool for complete eradication and control of infectious diseases. In this study, we aimed to design a peptide-based vaccine against L. donovani using immuno-bioinformatic tools. We identified 6 HTL, 18 CTL, and 25 B-cell epitopes from three hypothetical membrane proteins of L. donovani. All these epitopes were used to make a vaccine construct along with linkers. An adjuvant was also added at the N-terminal to enhance its immunogenicity. After that, we checked the quality of this vaccine construct and found that it is nontoxic, nonallergic, and thermally stable. A 3D structure of the vaccine construct was also generated by homology modeling to evaluate its interaction with innate immune receptors (TLR). Molecular docking was performed, which confirmed its binding with a toll-like receptor-2 (TLR-2). The stability of vaccine-TLR-2 complex and underlying interactions were evaluated using molecular dynamic simulation. Lastly, we carried out in silico cloning to check the expression of the final designed vaccine. The designed vaccine construct needs further experimental and clinical investigations to develop it as a safe and effective vaccine against VL infection.</description><subject>epitopes</subject><subject>Epitopes, B-Lymphocyte - immunology</subject><subject>Epitopes, T-Lymphocyte - immunology</subject><subject>Hypothetical proteins</subject><subject>Leishmania</subject><subject>Leishmaniasis - prevention & control</subject><subject>MHC</subject><subject>Molecular Docking Simulation</subject><subject>molecular dynamics simulation, Immunoinformatics</subject><subject>peptide vaccine</subject><subject>Protozoan Vaccines - immunology</subject><subject>Vaccines, Subunit - immunology</subject><subject>visceral leishmaniasis</subject><issn>2047-7724</issn><issn>2047-7732</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kU1r3DAQhkVpaUKSn9CiYy9OrC9LvpSWpF-wkEtzykHMakcbFVtyJTkh_75edrO0l-oiMXrnfYd5CHnH2kvWmvaKt1JrzeUlb_lSMpL3untFTnf1RmvBXx_fXJ6Qi1J-tcvpFNOcvyUnQrCOGaNPyf0NlrCNNHkKdJyHGhqcQk0T0jKv5xgqfQTnQkTqU6ZhHOeIzZRTRVdDihS2EGKpdIWhPIwQA9AJMpRQ8Zy88TAUvDjcZ-Tu65ef19-b1e23H9efV42TnamNc1wZ063XgEKCk0Iy16PxhnMUzLe96zfS9dIY8JxxpTsnTeeMktIJIbw4Ix_3vtO8HnHjMNYMg51yGCE_2wTB_vsTw4Pdpkertep53y4GHw4GOf2esVQ7huJwGCBimovlUpleqc6IRar2UpdTKRn9MYa1dsfGvrCxOzb2wGbpe__3jMeuFxKL4NNeEOKy6BGeUh42tsLzkLLPEF0oVvw_4w_k1J-z</recordid><startdate>20201116</startdate><enddate>20201116</enddate><creator>Yadav, Sunita</creator><creator>Prakash, Jay</creator><creator>Shukla, Harish</creator><creator>Das, Kanhu Charan</creator><creator>Tripathi, Timir</creator><creator>Dubey, Vikash Kumar</creator><general>Taylor & Francis</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-5559-289X</orcidid></search><sort><creationdate>20201116</creationdate><title>Design of a multi-epitope subunit vaccine for immune-protection against Leishmania parasite</title><author>Yadav, Sunita ; Prakash, Jay ; Shukla, Harish ; Das, Kanhu Charan ; Tripathi, Timir ; Dubey, Vikash Kumar</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c468t-cc25886bbae34ac4341c9e8f822e31f09c9d4c9488af212576c486c8544c333f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>epitopes</topic><topic>Epitopes, B-Lymphocyte - immunology</topic><topic>Epitopes, T-Lymphocyte - immunology</topic><topic>Hypothetical proteins</topic><topic>Leishmania</topic><topic>Leishmaniasis - prevention & control</topic><topic>MHC</topic><topic>Molecular Docking Simulation</topic><topic>molecular dynamics simulation, Immunoinformatics</topic><topic>peptide vaccine</topic><topic>Protozoan Vaccines - immunology</topic><topic>Vaccines, Subunit - immunology</topic><topic>visceral leishmaniasis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yadav, Sunita</creatorcontrib><creatorcontrib>Prakash, Jay</creatorcontrib><creatorcontrib>Shukla, Harish</creatorcontrib><creatorcontrib>Das, Kanhu Charan</creatorcontrib><creatorcontrib>Tripathi, Timir</creatorcontrib><creatorcontrib>Dubey, Vikash Kumar</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Pathogens and global health</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yadav, Sunita</au><au>Prakash, Jay</au><au>Shukla, Harish</au><au>Das, Kanhu Charan</au><au>Tripathi, Timir</au><au>Dubey, Vikash Kumar</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Design of a multi-epitope subunit vaccine for immune-protection against Leishmania parasite</atitle><jtitle>Pathogens and global health</jtitle><addtitle>Pathog Glob Health</addtitle><date>2020-11-16</date><risdate>2020</risdate><volume>114</volume><issue>8</issue><spage>471</spage><epage>481</epage><pages>471-481</pages><issn>2047-7724</issn><eissn>2047-7732</eissn><abstract>Visceral Leishmaniasis (VL) is an insect-borne neglected disease caused by the protozoan parasite Leishmania donovani. In the absence of a commercial vaccine against VL, chemotherapy is currently the only option used for the treatment of VL. Vaccination has been considered as the most effective and powerful tool for complete eradication and control of infectious diseases. In this study, we aimed to design a peptide-based vaccine against L. donovani using immuno-bioinformatic tools. We identified 6 HTL, 18 CTL, and 25 B-cell epitopes from three hypothetical membrane proteins of L. donovani. All these epitopes were used to make a vaccine construct along with linkers. An adjuvant was also added at the N-terminal to enhance its immunogenicity. After that, we checked the quality of this vaccine construct and found that it is nontoxic, nonallergic, and thermally stable. A 3D structure of the vaccine construct was also generated by homology modeling to evaluate its interaction with innate immune receptors (TLR). Molecular docking was performed, which confirmed its binding with a toll-like receptor-2 (TLR-2). The stability of vaccine-TLR-2 complex and underlying interactions were evaluated using molecular dynamic simulation. Lastly, we carried out in silico cloning to check the expression of the final designed vaccine. The designed vaccine construct needs further experimental and clinical investigations to develop it as a safe and effective vaccine against VL infection.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>33161887</pmid><doi>10.1080/20477724.2020.1842976</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0001-5559-289X</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | epitopes Epitopes, B-Lymphocyte - immunology Epitopes, T-Lymphocyte - immunology Hypothetical proteins Leishmania Leishmaniasis - prevention & control MHC Molecular Docking Simulation molecular dynamics simulation, Immunoinformatics peptide vaccine Protozoan Vaccines - immunology Vaccines, Subunit - immunology visceral leishmaniasis |
title | Design of a multi-epitope subunit vaccine for immune-protection against Leishmania parasite |
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