Usefulness of matrix-assisted laser desorption ionization/time of flight mass spectrometry for the identification of Streptococcus mutans

This study evaluated the reliability of MALDI-TOF MS coupled with statistical tools for the identification of Streptococcus mutans in comparison with PCR-based techniques. Bacterial isolates were identified and serotyped by conventional PCR, using S. mutans species and serotype-specific primers. For...

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Veröffentlicht in:Applied microbiology and biotechnology 2020-12, Vol.104 (24), p.10601-10612
Hauptverfasser: Saltos Rosero, Nancy, Torres Corral, Yolanda, Fernández Álvarez, Clara, Aguilera Guirao, Antonio, Seoane Prado, Rafael, Santos, Ysabel
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container_end_page 10612
container_issue 24
container_start_page 10601
container_title Applied microbiology and biotechnology
container_volume 104
creator Saltos Rosero, Nancy
Torres Corral, Yolanda
Fernández Álvarez, Clara
Aguilera Guirao, Antonio
Seoane Prado, Rafael
Santos, Ysabel
description This study evaluated the reliability of MALDI-TOF MS coupled with statistical tools for the identification of Streptococcus mutans in comparison with PCR-based techniques. Bacterial isolates were identified and serotyped by conventional PCR, using S. mutans species and serotype-specific primers. For bacterial identification, mass spectra data from S. mutans and other streptococci were compared with Biotyper V 3.1 database and the mass peak lists were examined by cluster and principal component (PCA) analysis. Identification of potential biomarkers was performed using UniProtKB/Swiss-Prot and UniProtKB/TrEMBL databases and BLAST tool of the NCBI database. PCR identified 100% of the isolates as S. mutans . S. mutans strains were typed as serotypes c (85.6%), e (8.6%), k (4.8%), and f (0.9%). Although only the 70% of the strains tested were identified at species level by the Biotyper database, PCA and cluster analysis of mass peaks allowed the identification of 100% S. mutans isolates and its differentiation from the other oral and non-oral streptococci. One mass peak at m/z value of 9572.73 was identified as species-specific biomarker for S. mutans . No biomarkers were identified for S. mutans serotypes. Key points • MALDI-TOF MS coupled with statistical tools for the identification of S. mutans. • Detection of species identifying biomarkers by MALDI-TOF MS. • PCR identification and serotyping of S. mutans from saliva samples.
doi_str_mv 10.1007/s00253-020-10980-7
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Bacterial isolates were identified and serotyped by conventional PCR, using S. mutans species and serotype-specific primers. For bacterial identification, mass spectra data from S. mutans and other streptococci were compared with Biotyper V 3.1 database and the mass peak lists were examined by cluster and principal component (PCA) analysis. Identification of potential biomarkers was performed using UniProtKB/Swiss-Prot and UniProtKB/TrEMBL databases and BLAST tool of the NCBI database. PCR identified 100% of the isolates as S. mutans . S. mutans strains were typed as serotypes c (85.6%), e (8.6%), k (4.8%), and f (0.9%). Although only the 70% of the strains tested were identified at species level by the Biotyper database, PCA and cluster analysis of mass peaks allowed the identification of 100% S. mutans isolates and its differentiation from the other oral and non-oral streptococci. One mass peak at m/z value of 9572.73 was identified as species-specific biomarker for S. mutans . No biomarkers were identified for S. mutans serotypes. Key points • MALDI-TOF MS coupled with statistical tools for the identification of S. mutans. • Detection of species identifying biomarkers by MALDI-TOF MS. • PCR identification and serotyping of S. mutans from saliva samples.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>33141297</pmid><doi>10.1007/s00253-020-10980-7</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-9506-6496</orcidid><orcidid>https://orcid.org/0000-0003-4398-4102</orcidid></addata></record>
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subjects Biomarkers
Biomedical and Life Sciences
Biotechnology
Cluster analysis
Genomics
Identification
Identification and classification
Ionization
Ions
Lasers
Life Sciences
Mass spectra
Mass spectrometry
Mass spectroscopy
Microbial Genetics and Genomics
Microbiology
Plasma desorption mass spectrometry
Principal components analysis
Proteomics
Reliability analysis
Reproducibility of Results
Saliva
Serotypes
Serotyping
Species
Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
Statistical methods
Statistics
Strains (organisms)
Streptococcus
Streptococcus infections
Streptococcus mutans
Streptococcus mutans - genetics
Time-of-flight mass spectrometry
Transcriptomics
title Usefulness of matrix-assisted laser desorption ionization/time of flight mass spectrometry for the identification of Streptococcus mutans
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