Different loci control resistance to different isolates of the same race of Colletotrichum lindemuthianum in common bean

Key message Linkage and genome-wide association analyses using high-throughput SNP genotyping revealed different loci controlling resistance to different isolates of race 65 of Colletotrichum lindemuthianum in common bean. Development of varieties with durable resistance to anthracnose is a major ch...

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Veröffentlicht in:Theoretical and applied genetics 2021-02, Vol.134 (2), p.543-556
Hauptverfasser: Costa, Larissa Carvalho, Nalin, Rafael Storto, Dias, Mariana Andrade, Ferreira, Márcio Elias, Song, Qijian, Pastor-Corrales, Marcial A., Hurtado-Gonzales, Oscar P., de Souza, Elaine Aparecida
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container_end_page 556
container_issue 2
container_start_page 543
container_title Theoretical and applied genetics
container_volume 134
creator Costa, Larissa Carvalho
Nalin, Rafael Storto
Dias, Mariana Andrade
Ferreira, Márcio Elias
Song, Qijian
Pastor-Corrales, Marcial A.
Hurtado-Gonzales, Oscar P.
de Souza, Elaine Aparecida
description Key message Linkage and genome-wide association analyses using high-throughput SNP genotyping revealed different loci controlling resistance to different isolates of race 65 of Colletotrichum lindemuthianum in common bean. Development of varieties with durable resistance to anthracnose is a major challenge in common bean breeding programs because of the extensive virulence diversity of Colletotrichum lindemuthianum fungus. We used linkage and genome-wide association analyses to tap the genomic regions associated with resistance to different isolates of race 65. Linkage mapping was done using an F 2 population derived from the cross between the Mesoamerican common beans BRS Estilo x Ouro Vermelho, inoculated with two different isolates of race 65. Association genetics relied on a diversity common bean panel containing 189 common bean accessions inoculated with five different isolates of race 65 as an attempt to validate the linkage analysis findings and, eventually, identify other genomic regions associated with resistance to race 65. The F 2 population and diversity panel were genotyped with the BARCBean6K_3 Illumina BeadChip containing 5398 SNP markers. Both linkage and genome-wide association analyses identified different loci controlling resistance to different isolates of race 65 on linkage group Pv04. Genome-wide association analysis also detected loci on Pv05, Pv10 and Pv11 associated with resistance to race 65. These findings indicate that resistance to race 65 can be overcome by the virulence diversity among different isolates of the same race and could lead to the loss of resistance after cultivar release. We identified 25 resistant common bean cultivars to all five isolates of race 65 in the diversity panel. The accessions should be useful to develop cultivars combining different resistance genes that favor durable resistance to anthracnose in common bean.
doi_str_mv 10.1007/s00122-020-03713-x
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Nalin, Rafael Storto ; Dias, Mariana Andrade ; Ferreira, Márcio Elias ; Song, Qijian ; Pastor-Corrales, Marcial A. ; Hurtado-Gonzales, Oscar P. ; de Souza, Elaine Aparecida</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c476t-4338ec93ed39059b99872166999036605ec3df41a09c011faa736bd9ca724adf3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Agriculture</topic><topic>Anthracnose</topic><topic>Ascomycota</topic><topic>Association analysis</topic><topic>Beans</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Chromosome Mapping</topic><topic>Chromosomes, Plant - genetics</topic><topic>Colletotrichum - isolation &amp; purification</topic><topic>Colletotrichum - pathogenicity</topic><topic>Colletotrichum lindemuthianum</topic><topic>Control</topic><topic>Cultivars</topic><topic>Disease Resistance - genetics</topic><topic>Disease Resistance - immunology</topic><topic>Diseases and pests</topic><topic>Fungal diseases of plants</topic><topic>Fungi</topic><topic>Gene Expression Regulation, Plant</topic><topic>Gene mapping</topic><topic>Genetic aspects</topic><topic>Genetic diversity</topic><topic>Genetic research</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Genotyping</topic><topic>Life Sciences</topic><topic>Linkage analysis</topic><topic>Original Article</topic><topic>Phaseolus - genetics</topic><topic>Phaseolus - microbiology</topic><topic>Plant Biochemistry</topic><topic>Plant Breeding</topic><topic>Plant Breeding/Biotechnology</topic><topic>Plant Diseases - genetics</topic><topic>Plant Diseases - microbiology</topic><topic>Plant Genetics and Genomics</topic><topic>Plant immunology</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Quantitative Trait Loci</topic><topic>Single-nucleotide polymorphism</topic><topic>Virulence</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Costa, Larissa Carvalho</creatorcontrib><creatorcontrib>Nalin, Rafael Storto</creatorcontrib><creatorcontrib>Dias, Mariana Andrade</creatorcontrib><creatorcontrib>Ferreira, Márcio Elias</creatorcontrib><creatorcontrib>Song, Qijian</creatorcontrib><creatorcontrib>Pastor-Corrales, Marcial A.</creatorcontrib><creatorcontrib>Hurtado-Gonzales, Oscar P.</creatorcontrib><creatorcontrib>de Souza, Elaine Aparecida</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Health &amp; 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Development of varieties with durable resistance to anthracnose is a major challenge in common bean breeding programs because of the extensive virulence diversity of Colletotrichum lindemuthianum fungus. We used linkage and genome-wide association analyses to tap the genomic regions associated with resistance to different isolates of race 65. Linkage mapping was done using an F 2 population derived from the cross between the Mesoamerican common beans BRS Estilo x Ouro Vermelho, inoculated with two different isolates of race 65. Association genetics relied on a diversity common bean panel containing 189 common bean accessions inoculated with five different isolates of race 65 as an attempt to validate the linkage analysis findings and, eventually, identify other genomic regions associated with resistance to race 65. The F 2 population and diversity panel were genotyped with the BARCBean6K_3 Illumina BeadChip containing 5398 SNP markers. 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subjects Agriculture
Anthracnose
Ascomycota
Association analysis
Beans
Biochemistry
Biomedical and Life Sciences
Biotechnology
Chromosome Mapping
Chromosomes, Plant - genetics
Colletotrichum - isolation & purification
Colletotrichum - pathogenicity
Colletotrichum lindemuthianum
Control
Cultivars
Disease Resistance - genetics
Disease Resistance - immunology
Diseases and pests
Fungal diseases of plants
Fungi
Gene Expression Regulation, Plant
Gene mapping
Genetic aspects
Genetic diversity
Genetic research
Genomes
Genomics
Genotyping
Life Sciences
Linkage analysis
Original Article
Phaseolus - genetics
Phaseolus - microbiology
Plant Biochemistry
Plant Breeding
Plant Breeding/Biotechnology
Plant Diseases - genetics
Plant Diseases - microbiology
Plant Genetics and Genomics
Plant immunology
Plant Proteins - genetics
Plant Proteins - metabolism
Polymorphism, Single Nucleotide
Quantitative Trait Loci
Single-nucleotide polymorphism
Virulence
title Different loci control resistance to different isolates of the same race of Colletotrichum lindemuthianum in common bean
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