DFT Study of a Missing Piece in Brasilane-Type Structure Biosynthesis: An Unusual Skeletal Rearrangement
Brasilane-type sesquiterpenes have been known for a long time, but their biosynthetic pathways and mechanisms remain elusive. Recently, two groups independently characterized a Trichoderma terpene cyclase that produces trichobrasilenol, a brasilane-type sesquiterpene, and a plausible biosynthetic pa...
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Veröffentlicht in: | Journal of the American Chemical Society 2020-11, Vol.142 (47), p.19830-19834 |
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creator | Sato, Hajime Hashishin, Takahiro Kanazawa, Junichiro Miyamoto, Kazunori Uchiyama, Masanobu |
description | Brasilane-type sesquiterpenes have been known for a long time, but their biosynthetic pathways and mechanisms remain elusive. Recently, two groups independently characterized a Trichoderma terpene cyclase that produces trichobrasilenol, a brasilane-type sesquiterpene, and a plausible biosynthetic pathway was proposed based on isotopic labeling experiments. In the proposed mechanism, the characteristic brasilane-type 5/6 bicyclic skeleton is synthesized from a 5/7/3 tricyclic intermediate via a complicated concerted reaction, including six chemical events of C–C σ bond metathesis and rearrangements, ring-contraction, π bond formation, and regioselective hydroxylation. However, our density functional theory (DFT) calculations do not support this mechanism. On the basis of DFT calculations, we propose a new pathway for trichobrasilenol biosynthesis, involving a multistep carbocation cascade in which cyclopropylcarbinyl cations in equilibrium with homoallyl cations play a pivotal role. This pathway and mechanism is in good agreement with previous biosynthetic studies on brasilane-type compounds and related terpenoids, including isotope-labeling experiments and byproducts analysis. |
doi_str_mv | 10.1021/jacs.0c09616 |
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Recently, two groups independently characterized a Trichoderma terpene cyclase that produces trichobrasilenol, a brasilane-type sesquiterpene, and a plausible biosynthetic pathway was proposed based on isotopic labeling experiments. In the proposed mechanism, the characteristic brasilane-type 5/6 bicyclic skeleton is synthesized from a 5/7/3 tricyclic intermediate via a complicated concerted reaction, including six chemical events of C–C σ bond metathesis and rearrangements, ring-contraction, π bond formation, and regioselective hydroxylation. However, our density functional theory (DFT) calculations do not support this mechanism. On the basis of DFT calculations, we propose a new pathway for trichobrasilenol biosynthesis, involving a multistep carbocation cascade in which cyclopropylcarbinyl cations in equilibrium with homoallyl cations play a pivotal role. This pathway and mechanism is in good agreement with previous biosynthetic studies on brasilane-type compounds and related terpenoids, including isotope-labeling experiments and byproducts analysis.</description><identifier>ISSN: 0002-7863</identifier><identifier>EISSN: 1520-5126</identifier><identifier>DOI: 10.1021/jacs.0c09616</identifier><identifier>PMID: 33124823</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Alkyl and Aryl Transferases - metabolism ; Cyclization ; Density Functional Theory ; Sesquiterpenes - chemistry ; Sesquiterpenes - metabolism ; Stereoisomerism ; Thermodynamics ; Trichoderma - metabolism</subject><ispartof>Journal of the American Chemical Society, 2020-11, Vol.142 (47), p.19830-19834</ispartof><rights>2020 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a390t-28c56bb705c2612c19f09e08f416a4db3017961306aec383e8fe4965378765e43</citedby><cites>FETCH-LOGICAL-a390t-28c56bb705c2612c19f09e08f416a4db3017961306aec383e8fe4965378765e43</cites><orcidid>0000-0001-6227-0864 ; 0000-0003-1423-6287 ; 0000-0001-6385-5944 ; 0000-0001-5185-096X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/jacs.0c09616$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/jacs.0c09616$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,780,784,2765,27076,27924,27925,56738,56788</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33124823$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sato, Hajime</creatorcontrib><creatorcontrib>Hashishin, Takahiro</creatorcontrib><creatorcontrib>Kanazawa, Junichiro</creatorcontrib><creatorcontrib>Miyamoto, Kazunori</creatorcontrib><creatorcontrib>Uchiyama, Masanobu</creatorcontrib><title>DFT Study of a Missing Piece in Brasilane-Type Structure Biosynthesis: An Unusual Skeletal Rearrangement</title><title>Journal of the American Chemical Society</title><addtitle>J. Am. Chem. Soc</addtitle><description>Brasilane-type sesquiterpenes have been known for a long time, but their biosynthetic pathways and mechanisms remain elusive. Recently, two groups independently characterized a Trichoderma terpene cyclase that produces trichobrasilenol, a brasilane-type sesquiterpene, and a plausible biosynthetic pathway was proposed based on isotopic labeling experiments. In the proposed mechanism, the characteristic brasilane-type 5/6 bicyclic skeleton is synthesized from a 5/7/3 tricyclic intermediate via a complicated concerted reaction, including six chemical events of C–C σ bond metathesis and rearrangements, ring-contraction, π bond formation, and regioselective hydroxylation. However, our density functional theory (DFT) calculations do not support this mechanism. On the basis of DFT calculations, we propose a new pathway for trichobrasilenol biosynthesis, involving a multistep carbocation cascade in which cyclopropylcarbinyl cations in equilibrium with homoallyl cations play a pivotal role. This pathway and mechanism is in good agreement with previous biosynthetic studies on brasilane-type compounds and related terpenoids, including isotope-labeling experiments and byproducts analysis.</description><subject>Alkyl and Aryl Transferases - metabolism</subject><subject>Cyclization</subject><subject>Density Functional Theory</subject><subject>Sesquiterpenes - chemistry</subject><subject>Sesquiterpenes - metabolism</subject><subject>Stereoisomerism</subject><subject>Thermodynamics</subject><subject>Trichoderma - metabolism</subject><issn>0002-7863</issn><issn>1520-5126</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNptkM9PwjAYhhujEURvnk2PHhz2x9Z13gRFTTAagfNSyjcojg7b9bD_3hFQL576NXm-98v7IHRJSZ8SRm_XSvs-0SQTVByhLk0YiRLKxDHqEkJYlErBO-jM-3X7jZmkp6jDOWWxZLyLVg-jKZ7UYdHgqsAKvxrvjV3idwMasLF44JQ3pbIQTZsttKgLug4O8MBUvrH1Crzxd_je4pkNPqgSTz6hhLodPkA5p-wSNmDrc3RSqNLDxeHtodnocTp8jsZvTy_D-3GkeEbqiEmdiPk8JYlmgjJNs4JkQGQRU6HixZwTmrZNOREKNJccZAFxJhKeylQkEPMeut7nbl31FcDX-cZ4DeWuQhV8zuJExDQlTLbozR7VrvLeQZFvndko1-SU5Du3-c5tfnDb4leH5DDfwOIX_pH5d3q3ta6Cs23R_7O-AeZ3gQ4</recordid><startdate>20201125</startdate><enddate>20201125</enddate><creator>Sato, Hajime</creator><creator>Hashishin, Takahiro</creator><creator>Kanazawa, Junichiro</creator><creator>Miyamoto, Kazunori</creator><creator>Uchiyama, Masanobu</creator><general>American Chemical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-6227-0864</orcidid><orcidid>https://orcid.org/0000-0003-1423-6287</orcidid><orcidid>https://orcid.org/0000-0001-6385-5944</orcidid><orcidid>https://orcid.org/0000-0001-5185-096X</orcidid></search><sort><creationdate>20201125</creationdate><title>DFT Study of a Missing Piece in Brasilane-Type Structure Biosynthesis: An Unusual Skeletal Rearrangement</title><author>Sato, Hajime ; Hashishin, Takahiro ; Kanazawa, Junichiro ; Miyamoto, Kazunori ; Uchiyama, Masanobu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a390t-28c56bb705c2612c19f09e08f416a4db3017961306aec383e8fe4965378765e43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Alkyl and Aryl Transferases - metabolism</topic><topic>Cyclization</topic><topic>Density Functional Theory</topic><topic>Sesquiterpenes - chemistry</topic><topic>Sesquiterpenes - metabolism</topic><topic>Stereoisomerism</topic><topic>Thermodynamics</topic><topic>Trichoderma - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sato, Hajime</creatorcontrib><creatorcontrib>Hashishin, Takahiro</creatorcontrib><creatorcontrib>Kanazawa, Junichiro</creatorcontrib><creatorcontrib>Miyamoto, Kazunori</creatorcontrib><creatorcontrib>Uchiyama, Masanobu</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of the American Chemical Society</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sato, Hajime</au><au>Hashishin, Takahiro</au><au>Kanazawa, Junichiro</au><au>Miyamoto, Kazunori</au><au>Uchiyama, Masanobu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>DFT Study of a Missing Piece in Brasilane-Type Structure Biosynthesis: An Unusual Skeletal Rearrangement</atitle><jtitle>Journal of the American Chemical Society</jtitle><addtitle>J. Am. Chem. Soc</addtitle><date>2020-11-25</date><risdate>2020</risdate><volume>142</volume><issue>47</issue><spage>19830</spage><epage>19834</epage><pages>19830-19834</pages><issn>0002-7863</issn><eissn>1520-5126</eissn><abstract>Brasilane-type sesquiterpenes have been known for a long time, but their biosynthetic pathways and mechanisms remain elusive. Recently, two groups independently characterized a Trichoderma terpene cyclase that produces trichobrasilenol, a brasilane-type sesquiterpene, and a plausible biosynthetic pathway was proposed based on isotopic labeling experiments. In the proposed mechanism, the characteristic brasilane-type 5/6 bicyclic skeleton is synthesized from a 5/7/3 tricyclic intermediate via a complicated concerted reaction, including six chemical events of C–C σ bond metathesis and rearrangements, ring-contraction, π bond formation, and regioselective hydroxylation. However, our density functional theory (DFT) calculations do not support this mechanism. On the basis of DFT calculations, we propose a new pathway for trichobrasilenol biosynthesis, involving a multistep carbocation cascade in which cyclopropylcarbinyl cations in equilibrium with homoallyl cations play a pivotal role. This pathway and mechanism is in good agreement with previous biosynthetic studies on brasilane-type compounds and related terpenoids, including isotope-labeling experiments and byproducts analysis.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>33124823</pmid><doi>10.1021/jacs.0c09616</doi><tpages>5</tpages><orcidid>https://orcid.org/0000-0001-6227-0864</orcidid><orcidid>https://orcid.org/0000-0003-1423-6287</orcidid><orcidid>https://orcid.org/0000-0001-6385-5944</orcidid><orcidid>https://orcid.org/0000-0001-5185-096X</orcidid></addata></record> |
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subjects | Alkyl and Aryl Transferases - metabolism Cyclization Density Functional Theory Sesquiterpenes - chemistry Sesquiterpenes - metabolism Stereoisomerism Thermodynamics Trichoderma - metabolism |
title | DFT Study of a Missing Piece in Brasilane-Type Structure Biosynthesis: An Unusual Skeletal Rearrangement |
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