Genome-wide association mapping for protein, oil and water-soluble protein contents in soybean
As a globally important legume crop, soybean provides excellent sources of protein and oil for human and livestock nutrition. Improving seed protein and oil contents has always been an important objective in soybean breeding. Water-soluble protein plays a significant role in the processing and effic...
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| Veröffentlicht in: | Molecular genetics and genomics : MGG 2021, Vol.296 (1), p.91-102 |
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| container_title | Molecular genetics and genomics : MGG |
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| creator | Zhang, Shanshan Hao, Derong Zhang, Shuyu Zhang, Dan Wang, Hui Du, Haiping Kan, Guizhen Yu, Deyue |
| description | As a globally important legume crop, soybean provides excellent sources of protein and oil for human and livestock nutrition. Improving seed protein and oil contents has always been an important objective in soybean breeding. Water-soluble protein plays a significant role in the processing and efficacy of soybean protein. Here, a genome-wide association study (GWAS) of seed compositions (protein, oil, and water-soluble protein contents) was conducted using 211 diverse soybean accessions genotyped with a 355 K SoySNP array. Three, four, and five QTLs were identified related to the protein, oil, and water-soluble protein contents, respectively. Furthermore, five QTLs (
qPC-15-1
,
qOC-8-1
,
qOC-12-1
,
qOC-20-1
and
qWSPC-8-1
) were detected in multiple environments. Analysis of the favorable alleles for oil and water-soluble protein contents showed that
qOC-8-1
(
qWSPC-8-1
) exerted inverse effects on oil and water-soluble protein synthesis. Relative expression analysis suggested that
Glyma.15G049200
in
qPC-15-1
affects protein synthesis and
Glyma.08G107800
in
qOC-8-1
and
qWSPC-8-1
might be involved in oil and water-soluble protein synthesis, producing opposite effects. The candidate genes and significant SNPs detected in the present study will allow a deeper understanding of the genetic basis for the regulation of protein, oil and water-soluble protein contents and provide important information that could be utilized in marker-assisted selection for soybean quality improvement. |
| doi_str_mv | 10.1007/s00438-020-01704-7 |
| format | Article |
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qPC-15-1
,
qOC-8-1
,
qOC-12-1
,
qOC-20-1
and
qWSPC-8-1
) were detected in multiple environments. Analysis of the favorable alleles for oil and water-soluble protein contents showed that
qOC-8-1
(
qWSPC-8-1
) exerted inverse effects on oil and water-soluble protein synthesis. Relative expression analysis suggested that
Glyma.15G049200
in
qPC-15-1
affects protein synthesis and
Glyma.08G107800
in
qOC-8-1
and
qWSPC-8-1
might be involved in oil and water-soluble protein synthesis, producing opposite effects. The candidate genes and significant SNPs detected in the present study will allow a deeper understanding of the genetic basis for the regulation of protein, oil and water-soluble protein contents and provide important information that could be utilized in marker-assisted selection for soybean quality improvement.</description><identifier>ISSN: 1617-4615</identifier><identifier>EISSN: 1617-4623</identifier><identifier>DOI: 10.1007/s00438-020-01704-7</identifier><identifier>PMID: 33006666</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Alleles ; Animal Genetics and Genomics ; Biochemistry ; Biomedical and Life Sciences ; Chromosome Mapping - methods ; Gene mapping ; Genetic Linkage ; Genome, Plant ; Genome-wide association studies ; Genome-Wide Association Study ; Genomes ; Genotype ; Glycine max - genetics ; Glycine max - metabolism ; Human Genetics ; Information processing ; Legumes ; Life Sciences ; Livestock ; Marker-assisted selection ; Microbial Genetics and Genomics ; Nutrient content ; Oils & fats ; Original Article ; Peptide mapping ; Phenotype ; Plant Breeding ; Plant Genetics and Genomics ; Plant Oils - metabolism ; Plant Proteins - biosynthesis ; Plant Proteins - genetics ; Polymorphism, Single Nucleotide ; Protein biosynthesis ; Protein synthesis ; Proteins ; Quality control ; Quantitative Trait Loci ; Seeds - chemistry ; Seeds - genetics ; Single-nucleotide polymorphism ; Solubility ; Soybeans</subject><ispartof>Molecular genetics and genomics : MGG, 2021, Vol.296 (1), p.91-102</ispartof><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2020</rights><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-88c1af613a64c1b34721e62727ab129742c88db82423e022666c6bb69f819c4f3</citedby><cites>FETCH-LOGICAL-c375t-88c1af613a64c1b34721e62727ab129742c88db82423e022666c6bb69f819c4f3</cites><orcidid>0000-0001-7263-2750</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00438-020-01704-7$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00438-020-01704-7$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33006666$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Shanshan</creatorcontrib><creatorcontrib>Hao, Derong</creatorcontrib><creatorcontrib>Zhang, Shuyu</creatorcontrib><creatorcontrib>Zhang, Dan</creatorcontrib><creatorcontrib>Wang, Hui</creatorcontrib><creatorcontrib>Du, Haiping</creatorcontrib><creatorcontrib>Kan, Guizhen</creatorcontrib><creatorcontrib>Yu, Deyue</creatorcontrib><title>Genome-wide association mapping for protein, oil and water-soluble protein contents in soybean</title><title>Molecular genetics and genomics : MGG</title><addtitle>Mol Genet Genomics</addtitle><addtitle>Mol Genet Genomics</addtitle><description>As a globally important legume crop, soybean provides excellent sources of protein and oil for human and livestock nutrition. Improving seed protein and oil contents has always been an important objective in soybean breeding. Water-soluble protein plays a significant role in the processing and efficacy of soybean protein. Here, a genome-wide association study (GWAS) of seed compositions (protein, oil, and water-soluble protein contents) was conducted using 211 diverse soybean accessions genotyped with a 355 K SoySNP array. Three, four, and five QTLs were identified related to the protein, oil, and water-soluble protein contents, respectively. Furthermore, five QTLs (
qPC-15-1
,
qOC-8-1
,
qOC-12-1
,
qOC-20-1
and
qWSPC-8-1
) were detected in multiple environments. Analysis of the favorable alleles for oil and water-soluble protein contents showed that
qOC-8-1
(
qWSPC-8-1
) exerted inverse effects on oil and water-soluble protein synthesis. Relative expression analysis suggested that
Glyma.15G049200
in
qPC-15-1
affects protein synthesis and
Glyma.08G107800
in
qOC-8-1
and
qWSPC-8-1
might be involved in oil and water-soluble protein synthesis, producing opposite effects. The candidate genes and significant SNPs detected in the present study will allow a deeper understanding of the genetic basis for the regulation of protein, oil and water-soluble protein contents and provide important information that could be utilized in marker-assisted selection for soybean quality improvement.</description><subject>Alleles</subject><subject>Animal Genetics and Genomics</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Chromosome Mapping - methods</subject><subject>Gene mapping</subject><subject>Genetic Linkage</subject><subject>Genome, Plant</subject><subject>Genome-wide association studies</subject><subject>Genome-Wide Association Study</subject><subject>Genomes</subject><subject>Genotype</subject><subject>Glycine max - genetics</subject><subject>Glycine max - metabolism</subject><subject>Human Genetics</subject><subject>Information processing</subject><subject>Legumes</subject><subject>Life Sciences</subject><subject>Livestock</subject><subject>Marker-assisted selection</subject><subject>Microbial Genetics and Genomics</subject><subject>Nutrient content</subject><subject>Oils & fats</subject><subject>Original Article</subject><subject>Peptide mapping</subject><subject>Phenotype</subject><subject>Plant Breeding</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Oils - metabolism</subject><subject>Plant Proteins - biosynthesis</subject><subject>Plant Proteins - genetics</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Protein biosynthesis</subject><subject>Protein synthesis</subject><subject>Proteins</subject><subject>Quality control</subject><subject>Quantitative Trait Loci</subject><subject>Seeds - chemistry</subject><subject>Seeds - genetics</subject><subject>Single-nucleotide polymorphism</subject><subject>Solubility</subject><subject>Soybeans</subject><issn>1617-4615</issn><issn>1617-4623</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp9kE1LAzEQhoMoWj_-gAcJePFgNF8m6VGKVkHwoldDNp0tW3aTmuxS-u9NrR_gwbnMwDzzzsuL0CmjV4xSfZ0plcIQyimhTFNJ9A4aMcU0kYqL3Z-Z3Rygw5wXtFCK6310IASlqtQIvU0hxA7IqpkBdjlH37i-iQF3brlswhzXMeFlij004RLHpsUuzPDK9ZBIju1QtfC9xj6GHkKfcZlzXFfgwjHaq12b4eSrH6HX-7uXyQN5ep4-Tm6fiBf6pifGeOZqxYRT0rNKSM0ZFKtcu4rxsZbcGzOrDJdcAOW8WPeqqtS4NmzsZS2O0MVWt3h5HyD3tmuyh7Z1AeKQLZfSSCqVpgU9_4Mu4pBCcVcowyTjnG0ovqV8ijknqO0yNZ1La8uo3aRvt-nbkr79TN_qcnT2JT1UHcx-Tr7jLoDYArmswhzS7-9_ZD8AoHWOoA</recordid><startdate>2021</startdate><enddate>2021</enddate><creator>Zhang, Shanshan</creator><creator>Hao, Derong</creator><creator>Zhang, Shuyu</creator><creator>Zhang, Dan</creator><creator>Wang, Hui</creator><creator>Du, Haiping</creator><creator>Kan, Guizhen</creator><creator>Yu, Deyue</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-7263-2750</orcidid></search><sort><creationdate>2021</creationdate><title>Genome-wide association mapping for protein, oil and water-soluble protein contents in soybean</title><author>Zhang, Shanshan ; Hao, Derong ; Zhang, Shuyu ; Zhang, Dan ; Wang, Hui ; Du, Haiping ; Kan, Guizhen ; Yu, Deyue</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-88c1af613a64c1b34721e62727ab129742c88db82423e022666c6bb69f819c4f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Alleles</topic><topic>Animal Genetics and Genomics</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Chromosome Mapping - methods</topic><topic>Gene mapping</topic><topic>Genetic Linkage</topic><topic>Genome, Plant</topic><topic>Genome-wide association studies</topic><topic>Genome-Wide Association Study</topic><topic>Genomes</topic><topic>Genotype</topic><topic>Glycine max - genetics</topic><topic>Glycine max - metabolism</topic><topic>Human Genetics</topic><topic>Information processing</topic><topic>Legumes</topic><topic>Life Sciences</topic><topic>Livestock</topic><topic>Marker-assisted selection</topic><topic>Microbial Genetics and Genomics</topic><topic>Nutrient content</topic><topic>Oils & fats</topic><topic>Original Article</topic><topic>Peptide mapping</topic><topic>Phenotype</topic><topic>Plant Breeding</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Oils - metabolism</topic><topic>Plant Proteins - biosynthesis</topic><topic>Plant Proteins - genetics</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Protein biosynthesis</topic><topic>Protein synthesis</topic><topic>Proteins</topic><topic>Quality control</topic><topic>Quantitative Trait Loci</topic><topic>Seeds - chemistry</topic><topic>Seeds - genetics</topic><topic>Single-nucleotide polymorphism</topic><topic>Solubility</topic><topic>Soybeans</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Shanshan</creatorcontrib><creatorcontrib>Hao, Derong</creatorcontrib><creatorcontrib>Zhang, Shuyu</creatorcontrib><creatorcontrib>Zhang, Dan</creatorcontrib><creatorcontrib>Wang, Hui</creatorcontrib><creatorcontrib>Du, Haiping</creatorcontrib><creatorcontrib>Kan, Guizhen</creatorcontrib><creatorcontrib>Yu, Deyue</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular genetics and genomics : MGG</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Shanshan</au><au>Hao, Derong</au><au>Zhang, Shuyu</au><au>Zhang, Dan</au><au>Wang, Hui</au><au>Du, Haiping</au><au>Kan, Guizhen</au><au>Yu, Deyue</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-wide association mapping for protein, oil and water-soluble protein contents in soybean</atitle><jtitle>Molecular genetics and genomics : MGG</jtitle><stitle>Mol Genet Genomics</stitle><addtitle>Mol Genet Genomics</addtitle><date>2021</date><risdate>2021</risdate><volume>296</volume><issue>1</issue><spage>91</spage><epage>102</epage><pages>91-102</pages><issn>1617-4615</issn><eissn>1617-4623</eissn><abstract>As a globally important legume crop, soybean provides excellent sources of protein and oil for human and livestock nutrition. Improving seed protein and oil contents has always been an important objective in soybean breeding. Water-soluble protein plays a significant role in the processing and efficacy of soybean protein. Here, a genome-wide association study (GWAS) of seed compositions (protein, oil, and water-soluble protein contents) was conducted using 211 diverse soybean accessions genotyped with a 355 K SoySNP array. Three, four, and five QTLs were identified related to the protein, oil, and water-soluble protein contents, respectively. Furthermore, five QTLs (
qPC-15-1
,
qOC-8-1
,
qOC-12-1
,
qOC-20-1
and
qWSPC-8-1
) were detected in multiple environments. Analysis of the favorable alleles for oil and water-soluble protein contents showed that
qOC-8-1
(
qWSPC-8-1
) exerted inverse effects on oil and water-soluble protein synthesis. Relative expression analysis suggested that
Glyma.15G049200
in
qPC-15-1
affects protein synthesis and
Glyma.08G107800
in
qOC-8-1
and
qWSPC-8-1
might be involved in oil and water-soluble protein synthesis, producing opposite effects. The candidate genes and significant SNPs detected in the present study will allow a deeper understanding of the genetic basis for the regulation of protein, oil and water-soluble protein contents and provide important information that could be utilized in marker-assisted selection for soybean quality improvement.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>33006666</pmid><doi>10.1007/s00438-020-01704-7</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0001-7263-2750</orcidid></addata></record> |
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| subjects | Alleles Animal Genetics and Genomics Biochemistry Biomedical and Life Sciences Chromosome Mapping - methods Gene mapping Genetic Linkage Genome, Plant Genome-wide association studies Genome-Wide Association Study Genomes Genotype Glycine max - genetics Glycine max - metabolism Human Genetics Information processing Legumes Life Sciences Livestock Marker-assisted selection Microbial Genetics and Genomics Nutrient content Oils & fats Original Article Peptide mapping Phenotype Plant Breeding Plant Genetics and Genomics Plant Oils - metabolism Plant Proteins - biosynthesis Plant Proteins - genetics Polymorphism, Single Nucleotide Protein biosynthesis Protein synthesis Proteins Quality control Quantitative Trait Loci Seeds - chemistry Seeds - genetics Single-nucleotide polymorphism Solubility Soybeans |
| title | Genome-wide association mapping for protein, oil and water-soluble protein contents in soybean |
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