Temperature as an Extra Dimension in Multidimensional Protein NMR Spectroscopy

NMR spectroscopy is a particularly informative method for studying protein structures and dynamics in solution; however, it is also one of the most time‐consuming. Modern approaches to biomolecular NMR spectroscopy are based on lengthy multidimensional experiments, the duration of which grows expone...

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Veröffentlicht in:Chemistry : a European journal 2021-01, Vol.27 (5), p.1753-1767
Hauptverfasser: Shchukina, Alexandra, Małecki, Paweł, Mateos, Borja, Nowakowski, Michał, Urbańczyk, Mateusz, Kontaxis, Georg, Kasprzak, Paweł, Conrad‐Billroth, Clara, Konrat, Robert, Kazimierczuk, Krzysztof
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container_end_page 1767
container_issue 5
container_start_page 1753
container_title Chemistry : a European journal
container_volume 27
creator Shchukina, Alexandra
Małecki, Paweł
Mateos, Borja
Nowakowski, Michał
Urbańczyk, Mateusz
Kontaxis, Georg
Kasprzak, Paweł
Conrad‐Billroth, Clara
Konrat, Robert
Kazimierczuk, Krzysztof
description NMR spectroscopy is a particularly informative method for studying protein structures and dynamics in solution; however, it is also one of the most time‐consuming. Modern approaches to biomolecular NMR spectroscopy are based on lengthy multidimensional experiments, the duration of which grows exponentially with the number of dimensions. The experimental time may even be several days in the case of 3D and 4D spectra. Moreover, the experiment often has to be repeated under several different conditions, for example, to measure the temperature‐dependent effects in a spectrum (temperature coefficients (TCs)). Herein, a new approach that involves joint sampling of indirect evolution times and temperature is proposed. This allows TCs to be measured through 3D spectra in even less time than that needed to acquire a single spectrum by using the conventional approach. Two signal processing methods that are complementary, in terms of sensitivity and resolution, 1) dividing data into overlapping subsets followed by compressed sensing reconstruction, and 2) treating the complete data set with a variant of the Radon transform, are proposed. The temperature‐swept 3D HNCO spectra of two intrinsically disordered proteins, osteopontin and CD44 cytoplasmic tail, show that this new approach makes it possible to determine TCs and their non‐linearities effectively. Non‐linearities, which indicate the presence of a compact state, are particularly interesting. The complete package of data acquisition and processing software for this new approach are provided. Time‐saving processing: The rates of temperature‐dependent chemical shift changes help in protein structure analysis. Three‐dimensional experiments to reveal these changes are often lengthy to the extent of being barely feasible. Two specially tailored data processing techniques yield temperature coefficients and their non‐linearities to overcome this limitation.
doi_str_mv 10.1002/chem.202003678
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source MEDLINE; Access via Wiley Online Library
subjects Biomedical materials
CD44 antigen
Chemistry
Data acquisition
Data processing
Dynamic structural analysis
Information processing
Magnetic resonance spectroscopy
multidimensional spectroscopy
NMR
NMR spectroscopy
Nuclear magnetic resonance
Nuclear Magnetic Resonance, Biomolecular - methods
Osteopontin
protein dynamics
protein structures
Proteins
Proteins - chemistry
Radon
Radon transformation
Signal processing
Spectra
Spectroscopy
Spectrum analysis
structure elucidation
Temperature
Temperature dependence
title Temperature as an Extra Dimension in Multidimensional Protein NMR Spectroscopy
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