Nonlinear dipole inversion (NDI) enables robust quantitative susceptibility mapping (QSM)
High‐quality Quantitative Susceptibility Mapping (QSM) with Nonlinear Dipole Inversion (NDI) is developed with pre‐determined regularization while matching the image quality of state‐of‐the‐art reconstruction techniques and avoiding over‐smoothing that these techniques often suffer from. NDI is flex...
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Veröffentlicht in: | NMR in biomedicine 2020-12, Vol.33 (12), p.e4271-n/a |
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creator | Polak, Daniel Chatnuntawech, Itthi Yoon, Jaeyeon Iyer, Siddharth Srinivasan Milovic, Carlos Lee, Jongho Bachert, Peter Adalsteinsson, Elfar Setsompop, Kawin Bilgic, Berkin |
description | High‐quality Quantitative Susceptibility Mapping (QSM) with Nonlinear Dipole Inversion (NDI) is developed with pre‐determined regularization while matching the image quality of state‐of‐the‐art reconstruction techniques and avoiding over‐smoothing that these techniques often suffer from. NDI is flexible enough to allow for reconstruction from an arbitrary number of head orientations and outperforms COSMOS even when using as few as 1‐direction data. This is made possible by a nonlinear forward‐model that uses the magnitude as an effective prior, for which we derived a simple gradient descent update rule. We synergistically combine this physics‐model with a Variational Network (VN) to leverage the power of deep learning in the VaNDI algorithm. This technique adopts the simple gradient descent rule from NDI and learns the network parameters during training, hence requires no additional parameter tuning. Further, we evaluate NDI at 7 T using highly accelerated Wave‐CAIPI acquisitions at 0.5 mm isotropic resolution and demonstrate high‐quality QSM from as few as 2‐direction data.
NDI enables QSM with pre‐determined regularization while matching the quality of state‐of‐the‐art techniques. This is made possible by a nonlinear forward‐model that uses the magnitude as an effective prior, for which we derived a simple gradient descent update rule. Further improvement was achieved by combining this physics‐model with deep learning (VaNDI), where the NDI update rule was adopted and regularizers are learnt from training data. |
doi_str_mv | 10.1002/nbm.4271 |
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NDI enables QSM with pre‐determined regularization while matching the quality of state‐of‐the‐art techniques. This is made possible by a nonlinear forward‐model that uses the magnitude as an effective prior, for which we derived a simple gradient descent update rule. Further improvement was achieved by combining this physics‐model with deep learning (VaNDI), where the NDI update rule was adopted and regularizers are learnt from training data.</description><identifier>ISSN: 0952-3480</identifier><identifier>EISSN: 1099-1492</identifier><identifier>DOI: 10.1002/nbm.4271</identifier><identifier>PMID: 32078756</identifier><language>eng</language><publisher>England: Wiley Subscription Services, Inc</publisher><subject>Algorithms ; Biological products ; deep learning ; Dipoles ; Humans ; Image Processing, Computer-Assisted ; Image quality ; Inversion ; Machine learning ; Magnetic Resonance Imaging ; Mapping ; Mathematical models ; Nonlinear Dynamics ; nonlinear inversion ; Parameters ; quantitative susceptibility mapping ; Reconstruction ; Regularization</subject><ispartof>NMR in biomedicine, 2020-12, Vol.33 (12), p.e4271-n/a</ispartof><rights>2020 John Wiley & Sons, Ltd.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4881-d013b31f45b437946d058e3857bfd4ba63a97924751bbe31b1a7ec24454406d3</citedby><cites>FETCH-LOGICAL-c4881-d013b31f45b437946d058e3857bfd4ba63a97924751bbe31b1a7ec24454406d3</cites><orcidid>0000-0001-9781-1528 ; 0000-0002-9485-5434</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fnbm.4271$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fnbm.4271$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32078756$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Polak, Daniel</creatorcontrib><creatorcontrib>Chatnuntawech, Itthi</creatorcontrib><creatorcontrib>Yoon, Jaeyeon</creatorcontrib><creatorcontrib>Iyer, Siddharth Srinivasan</creatorcontrib><creatorcontrib>Milovic, Carlos</creatorcontrib><creatorcontrib>Lee, Jongho</creatorcontrib><creatorcontrib>Bachert, Peter</creatorcontrib><creatorcontrib>Adalsteinsson, Elfar</creatorcontrib><creatorcontrib>Setsompop, Kawin</creatorcontrib><creatorcontrib>Bilgic, Berkin</creatorcontrib><title>Nonlinear dipole inversion (NDI) enables robust quantitative susceptibility mapping (QSM)</title><title>NMR in biomedicine</title><addtitle>NMR Biomed</addtitle><description>High‐quality Quantitative Susceptibility Mapping (QSM) with Nonlinear Dipole Inversion (NDI) is developed with pre‐determined regularization while matching the image quality of state‐of‐the‐art reconstruction techniques and avoiding over‐smoothing that these techniques often suffer from. NDI is flexible enough to allow for reconstruction from an arbitrary number of head orientations and outperforms COSMOS even when using as few as 1‐direction data. This is made possible by a nonlinear forward‐model that uses the magnitude as an effective prior, for which we derived a simple gradient descent update rule. We synergistically combine this physics‐model with a Variational Network (VN) to leverage the power of deep learning in the VaNDI algorithm. This technique adopts the simple gradient descent rule from NDI and learns the network parameters during training, hence requires no additional parameter tuning. Further, we evaluate NDI at 7 T using highly accelerated Wave‐CAIPI acquisitions at 0.5 mm isotropic resolution and demonstrate high‐quality QSM from as few as 2‐direction data.
NDI enables QSM with pre‐determined regularization while matching the quality of state‐of‐the‐art techniques. This is made possible by a nonlinear forward‐model that uses the magnitude as an effective prior, for which we derived a simple gradient descent update rule. Further improvement was achieved by combining this physics‐model with deep learning (VaNDI), where the NDI update rule was adopted and regularizers are learnt from training data.</description><subject>Algorithms</subject><subject>Biological products</subject><subject>deep learning</subject><subject>Dipoles</subject><subject>Humans</subject><subject>Image Processing, Computer-Assisted</subject><subject>Image quality</subject><subject>Inversion</subject><subject>Machine learning</subject><subject>Magnetic Resonance Imaging</subject><subject>Mapping</subject><subject>Mathematical models</subject><subject>Nonlinear Dynamics</subject><subject>nonlinear inversion</subject><subject>Parameters</subject><subject>quantitative susceptibility mapping</subject><subject>Reconstruction</subject><subject>Regularization</subject><issn>0952-3480</issn><issn>1099-1492</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp10EtLAzEUhuEgiq0X8BdIwE1djOZy0iRLrbeCVkQ3roakk0pkJjMmM5X-e8c7CK7O5uHl8CG0R8kRJYQdB1sdAZN0DQ0p0TqjoNk6GhItWMZBkQHaSumZEKKAs0004IxIJcV4iB5ndSh9cCbiwjd16bAPSxeTrwMezc6mh9gFY0uXcKxtl1r80pnQ-ta0fulw6tLcNa23vvTtClemaXx4wqO7-5vDHbSxMGVyu193Gz1cnD9MrrLr28vp5OQ6m4NSNCsI5ZbTBQgLXGoYF0Qox5WQdlGANWNutNQMpKDWOk4tNdLNGYAAIOOCb6PRZ7aJ9UvnUptXvn-qLE1wdZfyXgJXwJju6cEf-lx3MfTP9UpIqgUQ9Rucxzql6BZ5E31l4iqnJH9fO-_Xzt_X7un-V7CzlSt-4Pe8Pcg-wasv3erfUD47vfkIvgG_hIbc</recordid><startdate>202012</startdate><enddate>202012</enddate><creator>Polak, Daniel</creator><creator>Chatnuntawech, Itthi</creator><creator>Yoon, Jaeyeon</creator><creator>Iyer, Siddharth Srinivasan</creator><creator>Milovic, Carlos</creator><creator>Lee, Jongho</creator><creator>Bachert, Peter</creator><creator>Adalsteinsson, Elfar</creator><creator>Setsompop, Kawin</creator><creator>Bilgic, Berkin</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-9781-1528</orcidid><orcidid>https://orcid.org/0000-0002-9485-5434</orcidid></search><sort><creationdate>202012</creationdate><title>Nonlinear dipole inversion (NDI) enables robust quantitative susceptibility mapping (QSM)</title><author>Polak, Daniel ; Chatnuntawech, Itthi ; Yoon, Jaeyeon ; Iyer, Siddharth Srinivasan ; Milovic, Carlos ; Lee, Jongho ; Bachert, Peter ; Adalsteinsson, Elfar ; Setsompop, Kawin ; Bilgic, Berkin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4881-d013b31f45b437946d058e3857bfd4ba63a97924751bbe31b1a7ec24454406d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Algorithms</topic><topic>Biological products</topic><topic>deep learning</topic><topic>Dipoles</topic><topic>Humans</topic><topic>Image Processing, Computer-Assisted</topic><topic>Image quality</topic><topic>Inversion</topic><topic>Machine learning</topic><topic>Magnetic Resonance Imaging</topic><topic>Mapping</topic><topic>Mathematical models</topic><topic>Nonlinear Dynamics</topic><topic>nonlinear inversion</topic><topic>Parameters</topic><topic>quantitative susceptibility mapping</topic><topic>Reconstruction</topic><topic>Regularization</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Polak, Daniel</creatorcontrib><creatorcontrib>Chatnuntawech, Itthi</creatorcontrib><creatorcontrib>Yoon, Jaeyeon</creatorcontrib><creatorcontrib>Iyer, Siddharth Srinivasan</creatorcontrib><creatorcontrib>Milovic, Carlos</creatorcontrib><creatorcontrib>Lee, Jongho</creatorcontrib><creatorcontrib>Bachert, Peter</creatorcontrib><creatorcontrib>Adalsteinsson, Elfar</creatorcontrib><creatorcontrib>Setsompop, Kawin</creatorcontrib><creatorcontrib>Bilgic, Berkin</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>NMR in biomedicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Polak, Daniel</au><au>Chatnuntawech, Itthi</au><au>Yoon, Jaeyeon</au><au>Iyer, Siddharth Srinivasan</au><au>Milovic, Carlos</au><au>Lee, Jongho</au><au>Bachert, Peter</au><au>Adalsteinsson, Elfar</au><au>Setsompop, Kawin</au><au>Bilgic, Berkin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Nonlinear dipole inversion (NDI) enables robust quantitative susceptibility mapping (QSM)</atitle><jtitle>NMR in biomedicine</jtitle><addtitle>NMR Biomed</addtitle><date>2020-12</date><risdate>2020</risdate><volume>33</volume><issue>12</issue><spage>e4271</spage><epage>n/a</epage><pages>e4271-n/a</pages><issn>0952-3480</issn><eissn>1099-1492</eissn><abstract>High‐quality Quantitative Susceptibility Mapping (QSM) with Nonlinear Dipole Inversion (NDI) is developed with pre‐determined regularization while matching the image quality of state‐of‐the‐art reconstruction techniques and avoiding over‐smoothing that these techniques often suffer from. NDI is flexible enough to allow for reconstruction from an arbitrary number of head orientations and outperforms COSMOS even when using as few as 1‐direction data. This is made possible by a nonlinear forward‐model that uses the magnitude as an effective prior, for which we derived a simple gradient descent update rule. We synergistically combine this physics‐model with a Variational Network (VN) to leverage the power of deep learning in the VaNDI algorithm. This technique adopts the simple gradient descent rule from NDI and learns the network parameters during training, hence requires no additional parameter tuning. Further, we evaluate NDI at 7 T using highly accelerated Wave‐CAIPI acquisitions at 0.5 mm isotropic resolution and demonstrate high‐quality QSM from as few as 2‐direction data.
NDI enables QSM with pre‐determined regularization while matching the quality of state‐of‐the‐art techniques. This is made possible by a nonlinear forward‐model that uses the magnitude as an effective prior, for which we derived a simple gradient descent update rule. Further improvement was achieved by combining this physics‐model with deep learning (VaNDI), where the NDI update rule was adopted and regularizers are learnt from training data.</abstract><cop>England</cop><pub>Wiley Subscription Services, Inc</pub><pmid>32078756</pmid><doi>10.1002/nbm.4271</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0001-9781-1528</orcidid><orcidid>https://orcid.org/0000-0002-9485-5434</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Algorithms Biological products deep learning Dipoles Humans Image Processing, Computer-Assisted Image quality Inversion Machine learning Magnetic Resonance Imaging Mapping Mathematical models Nonlinear Dynamics nonlinear inversion Parameters quantitative susceptibility mapping Reconstruction Regularization |
title | Nonlinear dipole inversion (NDI) enables robust quantitative susceptibility mapping (QSM) |
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