Sulfurimicrobium lacus gen. nov., sp. nov., a sulfur oxidizer isolated from lake water, and review of the family Sulfuricellaceae to show that it is not a later synonym of Gallionellaceae
A facultatively anaerobic sulfur-oxidizing bacterium, strain skT11 T , was isolated from anoxic lake water of a stratified freshwater lake. As electron donor for chemolithoautotrophic growth, strain skT11 T oxidized thiosulfate, tetrathionate, and elemental sulfur under nitrate-reducing conditions....
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| Veröffentlicht in: | Archives of microbiology 2021, Vol.203 (1), p.317-323 |
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| creator | Kojima, Hisaya Kanda, Mamoru Umezawa, Kazuhiro Fukui, Manabu |
| description | A facultatively anaerobic sulfur-oxidizing bacterium, strain skT11
T
, was isolated from anoxic lake water of a stratified freshwater lake. As electron donor for chemolithoautotrophic growth, strain skT11
T
oxidized thiosulfate, tetrathionate, and elemental sulfur under nitrate-reducing conditions. Oxygen-dependent growth was observed under microoxic conditions, but not under fully oxygenated conditions. Growth was observed at a temperature range of 5–37 °C, with optimum growth at 28 °C. Strain skT11
T
grew at a pH range of 5.1–7.5, with optimum growth at pH 6.5–6.9. Heterotrophic growth was not observed. Major components in the cellular fatty acid profile were C
16:1
and C
16:0
. The complete genome of strain skT11
T
consisted of a circular chromosome with a size of 3.8 Mbp and G + C content of 60.2 mol%. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that the strain skT11
T
is related to sulfur-oxidizing bacteria of the genera
Sulfuricella
,
Sulfurirhabdus,
and
Sulfuriferula
, with sequence identities of 95.4% or lower. The analysis also indicated that these three genera should be excluded from the family
Gallionellaceae
, as members of another family. On the basis of its genomic and phenotypic properties, strain skT11
T
(= DSM 110711
T
= NBRC 114323
T
) is proposed as the type strain of a new species in a new genus,
Sulfurimicrobium lacus
gen. nov., sp. nov. In addition, emended descriptions of the families
Gallionellaceae
and
Sulfuricellaceae
are proposed to declare that
Sulfuricellaceae
is not a later synonym of
Gallionellaceae
. |
| doi_str_mv | 10.1007/s00203-020-02029-0 |
| format | Article |
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T
, was isolated from anoxic lake water of a stratified freshwater lake. As electron donor for chemolithoautotrophic growth, strain skT11
T
oxidized thiosulfate, tetrathionate, and elemental sulfur under nitrate-reducing conditions. Oxygen-dependent growth was observed under microoxic conditions, but not under fully oxygenated conditions. Growth was observed at a temperature range of 5–37 °C, with optimum growth at 28 °C. Strain skT11
T
grew at a pH range of 5.1–7.5, with optimum growth at pH 6.5–6.9. Heterotrophic growth was not observed. Major components in the cellular fatty acid profile were C
16:1
and C
16:0
. The complete genome of strain skT11
T
consisted of a circular chromosome with a size of 3.8 Mbp and G + C content of 60.2 mol%. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that the strain skT11
T
is related to sulfur-oxidizing bacteria of the genera
Sulfuricella
,
Sulfurirhabdus,
and
Sulfuriferula
, with sequence identities of 95.4% or lower. The analysis also indicated that these three genera should be excluded from the family
Gallionellaceae
, as members of another family. On the basis of its genomic and phenotypic properties, strain skT11
T
(= DSM 110711
T
= NBRC 114323
T
) is proposed as the type strain of a new species in a new genus,
Sulfurimicrobium lacus
gen. nov., sp. nov. In addition, emended descriptions of the families
Gallionellaceae
and
Sulfuricellaceae
are proposed to declare that
Sulfuricellaceae
is not a later synonym of
Gallionellaceae
.</description><identifier>ISSN: 0302-8933</identifier><identifier>EISSN: 1432-072X</identifier><identifier>DOI: 10.1007/s00203-020-02029-0</identifier><identifier>PMID: 32926197</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Bacteria ; Betaproteobacteria - classification ; Betaproteobacteria - isolation & purification ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Cell Biology ; Chemoautotrophic Growth ; Chromosomes ; Ecology ; Fatty acids ; Fatty Acids - chemistry ; Freshwater lakes ; Gallionellaceae - classification ; Gallionellaceae - genetics ; Gene sequencing ; Genome, Bacterial - genetics ; Genomes ; Heterotrophic growth ; Lakes - microbiology ; Life Sciences ; Microbial Ecology ; Microbiology ; New genera ; New species ; Original Paper ; Oxidation ; Oxidation-Reduction ; Oxidizing agents ; pH effects ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Species Specificity ; Sulfur ; Sulfur - metabolism ; Tetrathionate ; Thiosulfate ; Thiosulfates</subject><ispartof>Archives of microbiology, 2021, Vol.203 (1), p.317-323</ispartof><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2020</rights><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2900-1ccd9941a2c562ddbd636a45a1f245d45c38971ade0ec5f26398ef18bf45bded3</citedby><cites>FETCH-LOGICAL-c2900-1ccd9941a2c562ddbd636a45a1f245d45c38971ade0ec5f26398ef18bf45bded3</cites><orcidid>0000-0003-3750-8353</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00203-020-02029-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00203-020-02029-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41467,42536,51298</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32926197$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kojima, Hisaya</creatorcontrib><creatorcontrib>Kanda, Mamoru</creatorcontrib><creatorcontrib>Umezawa, Kazuhiro</creatorcontrib><creatorcontrib>Fukui, Manabu</creatorcontrib><title>Sulfurimicrobium lacus gen. nov., sp. nov., a sulfur oxidizer isolated from lake water, and review of the family Sulfuricellaceae to show that it is not a later synonym of Gallionellaceae</title><title>Archives of microbiology</title><addtitle>Arch Microbiol</addtitle><addtitle>Arch Microbiol</addtitle><description>A facultatively anaerobic sulfur-oxidizing bacterium, strain skT11
T
, was isolated from anoxic lake water of a stratified freshwater lake. As electron donor for chemolithoautotrophic growth, strain skT11
T
oxidized thiosulfate, tetrathionate, and elemental sulfur under nitrate-reducing conditions. Oxygen-dependent growth was observed under microoxic conditions, but not under fully oxygenated conditions. Growth was observed at a temperature range of 5–37 °C, with optimum growth at 28 °C. Strain skT11
T
grew at a pH range of 5.1–7.5, with optimum growth at pH 6.5–6.9. Heterotrophic growth was not observed. Major components in the cellular fatty acid profile were C
16:1
and C
16:0
. The complete genome of strain skT11
T
consisted of a circular chromosome with a size of 3.8 Mbp and G + C content of 60.2 mol%. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that the strain skT11
T
is related to sulfur-oxidizing bacteria of the genera
Sulfuricella
,
Sulfurirhabdus,
and
Sulfuriferula
, with sequence identities of 95.4% or lower. The analysis also indicated that these three genera should be excluded from the family
Gallionellaceae
, as members of another family. On the basis of its genomic and phenotypic properties, strain skT11
T
(= DSM 110711
T
= NBRC 114323
T
) is proposed as the type strain of a new species in a new genus,
Sulfurimicrobium lacus
gen. nov., sp. nov. In addition, emended descriptions of the families
Gallionellaceae
and
Sulfuricellaceae
are proposed to declare that
Sulfuricellaceae
is not a later synonym of
Gallionellaceae
.</description><subject>Bacteria</subject><subject>Betaproteobacteria - classification</subject><subject>Betaproteobacteria - isolation & purification</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Cell Biology</subject><subject>Chemoautotrophic Growth</subject><subject>Chromosomes</subject><subject>Ecology</subject><subject>Fatty acids</subject><subject>Fatty Acids - chemistry</subject><subject>Freshwater lakes</subject><subject>Gallionellaceae - classification</subject><subject>Gallionellaceae - genetics</subject><subject>Gene sequencing</subject><subject>Genome, Bacterial - genetics</subject><subject>Genomes</subject><subject>Heterotrophic growth</subject><subject>Lakes - microbiology</subject><subject>Life Sciences</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>New genera</subject><subject>New species</subject><subject>Original Paper</subject><subject>Oxidation</subject><subject>Oxidation-Reduction</subject><subject>Oxidizing agents</subject><subject>pH effects</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Species Specificity</subject><subject>Sulfur</subject><subject>Sulfur - metabolism</subject><subject>Tetrathionate</subject><subject>Thiosulfate</subject><subject>Thiosulfates</subject><issn>0302-8933</issn><issn>1432-072X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kctu1DAUhi0EokPhBVggS2xYkMG3JPYSVaUgVWIBSOwsxz5uXZJ4sJMOw6vxcjhzAYkFkq_yd_7_yD9CzylZU0LaN5kQRnhVlmUyVZEHaEUFZxVp2deHaEU4YZVUnJ-hJznfEUKZlPIxOuNMsYaqdoV-fZp7P6cwBJtiF-YB98bOGd_AuMZjvF-_xnlzOhmc9zSOP4ILPyHhkGNvJnDYp7iUfgO8LfdU2NHhBPcBtjh6PN0C9mYI_Q4fDS30xQkM4CnifBu3hTETDmXkYjcVs0U54bwb47gbFpUr0_chjqfKp-iRN32GZ8f9HH15d_n54n11_fHqw8Xb68oyRUhFrXVKCWqYrRvmXOca3hhRG-qZqJ2oLZeqpcYBAVt71nAlwVPZeVF3Dhw_R68OupsUv8-QJz2EvO9_hDhnzYRgUhCpWEFf_oPexTmNpbtCtbJpBJWyUOxAlT_POYHXm5KASTtNiV6i1YdodVn0PlpNStGLo_TcDeD-lJyyLAA_ALk8jTeQ_nr_R_Y326SxNw</recordid><startdate>2021</startdate><enddate>2021</enddate><creator>Kojima, Hisaya</creator><creator>Kanda, Mamoru</creator><creator>Umezawa, Kazuhiro</creator><creator>Fukui, Manabu</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-3750-8353</orcidid></search><sort><creationdate>2021</creationdate><title>Sulfurimicrobium lacus gen. nov., sp. nov., a sulfur oxidizer isolated from lake water, and review of the family Sulfuricellaceae to show that it is not a later synonym of Gallionellaceae</title><author>Kojima, Hisaya ; Kanda, Mamoru ; Umezawa, Kazuhiro ; Fukui, Manabu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2900-1ccd9941a2c562ddbd636a45a1f245d45c38971ade0ec5f26398ef18bf45bded3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Bacteria</topic><topic>Betaproteobacteria - classification</topic><topic>Betaproteobacteria - isolation & purification</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Cell Biology</topic><topic>Chemoautotrophic Growth</topic><topic>Chromosomes</topic><topic>Ecology</topic><topic>Fatty acids</topic><topic>Fatty Acids - chemistry</topic><topic>Freshwater lakes</topic><topic>Gallionellaceae - classification</topic><topic>Gallionellaceae - genetics</topic><topic>Gene sequencing</topic><topic>Genome, Bacterial - genetics</topic><topic>Genomes</topic><topic>Heterotrophic growth</topic><topic>Lakes - microbiology</topic><topic>Life Sciences</topic><topic>Microbial Ecology</topic><topic>Microbiology</topic><topic>New genera</topic><topic>New species</topic><topic>Original Paper</topic><topic>Oxidation</topic><topic>Oxidation-Reduction</topic><topic>Oxidizing agents</topic><topic>pH effects</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA 16S</topic><topic>Species Specificity</topic><topic>Sulfur</topic><topic>Sulfur - metabolism</topic><topic>Tetrathionate</topic><topic>Thiosulfate</topic><topic>Thiosulfates</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kojima, Hisaya</creatorcontrib><creatorcontrib>Kanda, Mamoru</creatorcontrib><creatorcontrib>Umezawa, Kazuhiro</creatorcontrib><creatorcontrib>Fukui, Manabu</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kojima, Hisaya</au><au>Kanda, Mamoru</au><au>Umezawa, Kazuhiro</au><au>Fukui, Manabu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Sulfurimicrobium lacus gen. nov., sp. nov., a sulfur oxidizer isolated from lake water, and review of the family Sulfuricellaceae to show that it is not a later synonym of Gallionellaceae</atitle><jtitle>Archives of microbiology</jtitle><stitle>Arch Microbiol</stitle><addtitle>Arch Microbiol</addtitle><date>2021</date><risdate>2021</risdate><volume>203</volume><issue>1</issue><spage>317</spage><epage>323</epage><pages>317-323</pages><issn>0302-8933</issn><eissn>1432-072X</eissn><abstract>A facultatively anaerobic sulfur-oxidizing bacterium, strain skT11
T
, was isolated from anoxic lake water of a stratified freshwater lake. As electron donor for chemolithoautotrophic growth, strain skT11
T
oxidized thiosulfate, tetrathionate, and elemental sulfur under nitrate-reducing conditions. Oxygen-dependent growth was observed under microoxic conditions, but not under fully oxygenated conditions. Growth was observed at a temperature range of 5–37 °C, with optimum growth at 28 °C. Strain skT11
T
grew at a pH range of 5.1–7.5, with optimum growth at pH 6.5–6.9. Heterotrophic growth was not observed. Major components in the cellular fatty acid profile were C
16:1
and C
16:0
. The complete genome of strain skT11
T
consisted of a circular chromosome with a size of 3.8 Mbp and G + C content of 60.2 mol%. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that the strain skT11
T
is related to sulfur-oxidizing bacteria of the genera
Sulfuricella
,
Sulfurirhabdus,
and
Sulfuriferula
, with sequence identities of 95.4% or lower. The analysis also indicated that these three genera should be excluded from the family
Gallionellaceae
, as members of another family. On the basis of its genomic and phenotypic properties, strain skT11
T
(= DSM 110711
T
= NBRC 114323
T
) is proposed as the type strain of a new species in a new genus,
Sulfurimicrobium lacus
gen. nov., sp. nov. In addition, emended descriptions of the families
Gallionellaceae
and
Sulfuricellaceae
are proposed to declare that
Sulfuricellaceae
is not a later synonym of
Gallionellaceae
.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>32926197</pmid><doi>10.1007/s00203-020-02029-0</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0003-3750-8353</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0302-8933 |
| ispartof | Archives of microbiology, 2021, Vol.203 (1), p.317-323 |
| issn | 0302-8933 1432-072X |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2442840892 |
| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Bacteria Betaproteobacteria - classification Betaproteobacteria - isolation & purification Biochemistry Biomedical and Life Sciences Biotechnology Cell Biology Chemoautotrophic Growth Chromosomes Ecology Fatty acids Fatty Acids - chemistry Freshwater lakes Gallionellaceae - classification Gallionellaceae - genetics Gene sequencing Genome, Bacterial - genetics Genomes Heterotrophic growth Lakes - microbiology Life Sciences Microbial Ecology Microbiology New genera New species Original Paper Oxidation Oxidation-Reduction Oxidizing agents pH effects Phylogeny RNA, Ribosomal, 16S - genetics rRNA 16S Species Specificity Sulfur Sulfur - metabolism Tetrathionate Thiosulfate Thiosulfates |
| title | Sulfurimicrobium lacus gen. nov., sp. nov., a sulfur oxidizer isolated from lake water, and review of the family Sulfuricellaceae to show that it is not a later synonym of Gallionellaceae |
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