New artificial network model to estimate biological activity of peat humic acids
This article focuses on new method to estimate biological activity of peat humic acids (HAs) using artificial neural network (ANN) to process spectroscopic measurements in infrared and visible ranges. Conventional approaches generally rely on biological models and direct detection of chemical substa...
Gespeichert in:
Veröffentlicht in: | Environmental research 2020-12, Vol.191, p.109999-109999, Article 109999 |
---|---|
Hauptverfasser: | , , , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 109999 |
---|---|
container_issue | |
container_start_page | 109999 |
container_title | Environmental research |
container_volume | 191 |
creator | Zykova, Maria V. Brazovsky, Konstantin S. Veretennikova, Elena E. Danilets, Marina G. Logvinova, Lyudmila A. Romanenko, Sergey V. Trofimova, Evgenia S. Ligacheva, Anastasia A. Bratishko, Kristina A. Yusubov, Mekhman S. Lyapkov, Alexey A. Belousov, Michael V. |
description | This article focuses on new method to estimate biological activity of peat humic acids (HAs) using artificial neural network (ANN) to process spectroscopic measurements in infrared and visible ranges. Conventional approaches generally rely on biological models and direct detection of chemical substances related to bioactivity. These methods proved to be accurate and reliable, but at the expense of speed and simplicity.
Recently, a conception of quantitative structure-activity relationship (QSAR) has been introduced and successfully implemented to predict effects of HAs on toxicity of polycyclic aromatic hydrocarbons. Our research stems from this conception, but employs multilayer perceptron (MLP) model to improve overall performance. The developed MLP model allowed us to estimate biological activity of the complete vertical peat cores collected from oligotrophic peat bog, located in southern taiga zone of West Siberia (north-eastern spurs of the Great Vasyugan Mire, 56°58′ N 82о36’ E). In total, 42 samples taken from the cores were collected. The protocol included spectroscopy (in infrared and visible ranges) and biological model with peritoneal activated macrophages as a reference method to directly measure biological activity of HAs.
and discussion. Numerical experiments confirmed consistency of the measured and estimated bioactivity, coefficient of determination R2 = 0.97. These experiments also showed that the MLP model significantly outperforms conventional linear multiple regression models, mainly due to essential nonlinearity of structure-activity relationships.
Our research demonstrates that biological activity of HAs extracted from peat samples can be estimated using an artificial neural network model trained on infrared and visible spectra.
•Humic acids demonstrate highly variable bioactivity depending on chemical composition.•Biological activity of humic acids can be estimated using infrared spectrometry data.•The proposed screening method allows fast and inexpensive preselection of peat samples. |
doi_str_mv | 10.1016/j.envres.2020.109999 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2434060463</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0013935120308963</els_id><sourcerecordid>2434060463</sourcerecordid><originalsourceid>FETCH-LOGICAL-c362t-7034bb990ab0886a67d74e10279cef1bf1fe8d0751ef43ae6662e94ef308ff363</originalsourceid><addsrcrecordid>eNp9kEtPxCAQgInR6Pr4B8Zw9NJ1KCxtLybG-EqMetAzoXRQ1nZZgV3jv5dN1aNzYZh8wzAfIccMpgyYPJtPcbEOGKcllJtSk2OLTHIiC2hmfJtMABgvGj5je2Q_xnm-shmHXbLHy6oWwOoJeXrAT6pDctYZp3u6wPTpwzsdfIc9TZ5iTG7QCWnrfO9fncmQNsmtXfqi3tIl6kTfVoMzuey6eEh2rO4jHv2cB-Tl-ur58ra4f7y5u7y4LwyXZSoq4KJtmwZ0C3Uttay6SiCDsmoMWtZaZrHuoJoxtIJrlFKW2Ai0HGprueQH5HR8dxn8xyr_Ug0uGux7vUC_iqoUXIAEIXlGxYia4GMMaNUy5J3Cl2KgNi7VXI0u1calGl3mtpOfCat2wO6v6VdeBs5HAPOea4dBReNwYbBzAU1SnXf_T_gGksCHZA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2434060463</pqid></control><display><type>article</type><title>New artificial network model to estimate biological activity of peat humic acids</title><source>MEDLINE</source><source>ScienceDirect Journals (5 years ago - present)</source><creator>Zykova, Maria V. ; Brazovsky, Konstantin S. ; Veretennikova, Elena E. ; Danilets, Marina G. ; Logvinova, Lyudmila A. ; Romanenko, Sergey V. ; Trofimova, Evgenia S. ; Ligacheva, Anastasia A. ; Bratishko, Kristina A. ; Yusubov, Mekhman S. ; Lyapkov, Alexey A. ; Belousov, Michael V.</creator><creatorcontrib>Zykova, Maria V. ; Brazovsky, Konstantin S. ; Veretennikova, Elena E. ; Danilets, Marina G. ; Logvinova, Lyudmila A. ; Romanenko, Sergey V. ; Trofimova, Evgenia S. ; Ligacheva, Anastasia A. ; Bratishko, Kristina A. ; Yusubov, Mekhman S. ; Lyapkov, Alexey A. ; Belousov, Michael V.</creatorcontrib><description>This article focuses on new method to estimate biological activity of peat humic acids (HAs) using artificial neural network (ANN) to process spectroscopic measurements in infrared and visible ranges. Conventional approaches generally rely on biological models and direct detection of chemical substances related to bioactivity. These methods proved to be accurate and reliable, but at the expense of speed and simplicity.
Recently, a conception of quantitative structure-activity relationship (QSAR) has been introduced and successfully implemented to predict effects of HAs on toxicity of polycyclic aromatic hydrocarbons. Our research stems from this conception, but employs multilayer perceptron (MLP) model to improve overall performance. The developed MLP model allowed us to estimate biological activity of the complete vertical peat cores collected from oligotrophic peat bog, located in southern taiga zone of West Siberia (north-eastern spurs of the Great Vasyugan Mire, 56°58′ N 82о36’ E). In total, 42 samples taken from the cores were collected. The protocol included spectroscopy (in infrared and visible ranges) and biological model with peritoneal activated macrophages as a reference method to directly measure biological activity of HAs.
and discussion. Numerical experiments confirmed consistency of the measured and estimated bioactivity, coefficient of determination R2 = 0.97. These experiments also showed that the MLP model significantly outperforms conventional linear multiple regression models, mainly due to essential nonlinearity of structure-activity relationships.
Our research demonstrates that biological activity of HAs extracted from peat samples can be estimated using an artificial neural network model trained on infrared and visible spectra.
•Humic acids demonstrate highly variable bioactivity depending on chemical composition.•Biological activity of humic acids can be estimated using infrared spectrometry data.•The proposed screening method allows fast and inexpensive preselection of peat samples.</description><identifier>ISSN: 0013-9351</identifier><identifier>EISSN: 1096-0953</identifier><identifier>DOI: 10.1016/j.envres.2020.109999</identifier><identifier>PMID: 32784018</identifier><language>eng</language><publisher>Netherlands: Elsevier Inc</publisher><subject>Biological activity ; Humic acids ; Humic Substances - analysis ; Macrophages ; Network model ; Neural Networks, Computer ; Peat ; Polycyclic Aromatic Hydrocarbons ; Quantitative Structure-Activity Relationship ; Soil ; Visible and infrared spectroscopy</subject><ispartof>Environmental research, 2020-12, Vol.191, p.109999-109999, Article 109999</ispartof><rights>2020</rights><rights>Copyright © 2020. Published by Elsevier Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c362t-7034bb990ab0886a67d74e10279cef1bf1fe8d0751ef43ae6662e94ef308ff363</citedby><cites>FETCH-LOGICAL-c362t-7034bb990ab0886a67d74e10279cef1bf1fe8d0751ef43ae6662e94ef308ff363</cites><orcidid>0000-0002-4779-9820</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.envres.2020.109999$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3548,27923,27924,45994</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32784018$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zykova, Maria V.</creatorcontrib><creatorcontrib>Brazovsky, Konstantin S.</creatorcontrib><creatorcontrib>Veretennikova, Elena E.</creatorcontrib><creatorcontrib>Danilets, Marina G.</creatorcontrib><creatorcontrib>Logvinova, Lyudmila A.</creatorcontrib><creatorcontrib>Romanenko, Sergey V.</creatorcontrib><creatorcontrib>Trofimova, Evgenia S.</creatorcontrib><creatorcontrib>Ligacheva, Anastasia A.</creatorcontrib><creatorcontrib>Bratishko, Kristina A.</creatorcontrib><creatorcontrib>Yusubov, Mekhman S.</creatorcontrib><creatorcontrib>Lyapkov, Alexey A.</creatorcontrib><creatorcontrib>Belousov, Michael V.</creatorcontrib><title>New artificial network model to estimate biological activity of peat humic acids</title><title>Environmental research</title><addtitle>Environ Res</addtitle><description>This article focuses on new method to estimate biological activity of peat humic acids (HAs) using artificial neural network (ANN) to process spectroscopic measurements in infrared and visible ranges. Conventional approaches generally rely on biological models and direct detection of chemical substances related to bioactivity. These methods proved to be accurate and reliable, but at the expense of speed and simplicity.
Recently, a conception of quantitative structure-activity relationship (QSAR) has been introduced and successfully implemented to predict effects of HAs on toxicity of polycyclic aromatic hydrocarbons. Our research stems from this conception, but employs multilayer perceptron (MLP) model to improve overall performance. The developed MLP model allowed us to estimate biological activity of the complete vertical peat cores collected from oligotrophic peat bog, located in southern taiga zone of West Siberia (north-eastern spurs of the Great Vasyugan Mire, 56°58′ N 82о36’ E). In total, 42 samples taken from the cores were collected. The protocol included spectroscopy (in infrared and visible ranges) and biological model with peritoneal activated macrophages as a reference method to directly measure biological activity of HAs.
and discussion. Numerical experiments confirmed consistency of the measured and estimated bioactivity, coefficient of determination R2 = 0.97. These experiments also showed that the MLP model significantly outperforms conventional linear multiple regression models, mainly due to essential nonlinearity of structure-activity relationships.
Our research demonstrates that biological activity of HAs extracted from peat samples can be estimated using an artificial neural network model trained on infrared and visible spectra.
•Humic acids demonstrate highly variable bioactivity depending on chemical composition.•Biological activity of humic acids can be estimated using infrared spectrometry data.•The proposed screening method allows fast and inexpensive preselection of peat samples.</description><subject>Biological activity</subject><subject>Humic acids</subject><subject>Humic Substances - analysis</subject><subject>Macrophages</subject><subject>Network model</subject><subject>Neural Networks, Computer</subject><subject>Peat</subject><subject>Polycyclic Aromatic Hydrocarbons</subject><subject>Quantitative Structure-Activity Relationship</subject><subject>Soil</subject><subject>Visible and infrared spectroscopy</subject><issn>0013-9351</issn><issn>1096-0953</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kEtPxCAQgInR6Pr4B8Zw9NJ1KCxtLybG-EqMetAzoXRQ1nZZgV3jv5dN1aNzYZh8wzAfIccMpgyYPJtPcbEOGKcllJtSk2OLTHIiC2hmfJtMABgvGj5je2Q_xnm-shmHXbLHy6oWwOoJeXrAT6pDctYZp3u6wPTpwzsdfIc9TZ5iTG7QCWnrfO9fncmQNsmtXfqi3tIl6kTfVoMzuey6eEh2rO4jHv2cB-Tl-ur58ra4f7y5u7y4LwyXZSoq4KJtmwZ0C3Uttay6SiCDsmoMWtZaZrHuoJoxtIJrlFKW2Ai0HGprueQH5HR8dxn8xyr_Ug0uGux7vUC_iqoUXIAEIXlGxYia4GMMaNUy5J3Cl2KgNi7VXI0u1calGl3mtpOfCat2wO6v6VdeBs5HAPOea4dBReNwYbBzAU1SnXf_T_gGksCHZA</recordid><startdate>202012</startdate><enddate>202012</enddate><creator>Zykova, Maria V.</creator><creator>Brazovsky, Konstantin S.</creator><creator>Veretennikova, Elena E.</creator><creator>Danilets, Marina G.</creator><creator>Logvinova, Lyudmila A.</creator><creator>Romanenko, Sergey V.</creator><creator>Trofimova, Evgenia S.</creator><creator>Ligacheva, Anastasia A.</creator><creator>Bratishko, Kristina A.</creator><creator>Yusubov, Mekhman S.</creator><creator>Lyapkov, Alexey A.</creator><creator>Belousov, Michael V.</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-4779-9820</orcidid></search><sort><creationdate>202012</creationdate><title>New artificial network model to estimate biological activity of peat humic acids</title><author>Zykova, Maria V. ; Brazovsky, Konstantin S. ; Veretennikova, Elena E. ; Danilets, Marina G. ; Logvinova, Lyudmila A. ; Romanenko, Sergey V. ; Trofimova, Evgenia S. ; Ligacheva, Anastasia A. ; Bratishko, Kristina A. ; Yusubov, Mekhman S. ; Lyapkov, Alexey A. ; Belousov, Michael V.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c362t-7034bb990ab0886a67d74e10279cef1bf1fe8d0751ef43ae6662e94ef308ff363</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Biological activity</topic><topic>Humic acids</topic><topic>Humic Substances - analysis</topic><topic>Macrophages</topic><topic>Network model</topic><topic>Neural Networks, Computer</topic><topic>Peat</topic><topic>Polycyclic Aromatic Hydrocarbons</topic><topic>Quantitative Structure-Activity Relationship</topic><topic>Soil</topic><topic>Visible and infrared spectroscopy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zykova, Maria V.</creatorcontrib><creatorcontrib>Brazovsky, Konstantin S.</creatorcontrib><creatorcontrib>Veretennikova, Elena E.</creatorcontrib><creatorcontrib>Danilets, Marina G.</creatorcontrib><creatorcontrib>Logvinova, Lyudmila A.</creatorcontrib><creatorcontrib>Romanenko, Sergey V.</creatorcontrib><creatorcontrib>Trofimova, Evgenia S.</creatorcontrib><creatorcontrib>Ligacheva, Anastasia A.</creatorcontrib><creatorcontrib>Bratishko, Kristina A.</creatorcontrib><creatorcontrib>Yusubov, Mekhman S.</creatorcontrib><creatorcontrib>Lyapkov, Alexey A.</creatorcontrib><creatorcontrib>Belousov, Michael V.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Environmental research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zykova, Maria V.</au><au>Brazovsky, Konstantin S.</au><au>Veretennikova, Elena E.</au><au>Danilets, Marina G.</au><au>Logvinova, Lyudmila A.</au><au>Romanenko, Sergey V.</au><au>Trofimova, Evgenia S.</au><au>Ligacheva, Anastasia A.</au><au>Bratishko, Kristina A.</au><au>Yusubov, Mekhman S.</au><au>Lyapkov, Alexey A.</au><au>Belousov, Michael V.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>New artificial network model to estimate biological activity of peat humic acids</atitle><jtitle>Environmental research</jtitle><addtitle>Environ Res</addtitle><date>2020-12</date><risdate>2020</risdate><volume>191</volume><spage>109999</spage><epage>109999</epage><pages>109999-109999</pages><artnum>109999</artnum><issn>0013-9351</issn><eissn>1096-0953</eissn><abstract>This article focuses on new method to estimate biological activity of peat humic acids (HAs) using artificial neural network (ANN) to process spectroscopic measurements in infrared and visible ranges. Conventional approaches generally rely on biological models and direct detection of chemical substances related to bioactivity. These methods proved to be accurate and reliable, but at the expense of speed and simplicity.
Recently, a conception of quantitative structure-activity relationship (QSAR) has been introduced and successfully implemented to predict effects of HAs on toxicity of polycyclic aromatic hydrocarbons. Our research stems from this conception, but employs multilayer perceptron (MLP) model to improve overall performance. The developed MLP model allowed us to estimate biological activity of the complete vertical peat cores collected from oligotrophic peat bog, located in southern taiga zone of West Siberia (north-eastern spurs of the Great Vasyugan Mire, 56°58′ N 82о36’ E). In total, 42 samples taken from the cores were collected. The protocol included spectroscopy (in infrared and visible ranges) and biological model with peritoneal activated macrophages as a reference method to directly measure biological activity of HAs.
and discussion. Numerical experiments confirmed consistency of the measured and estimated bioactivity, coefficient of determination R2 = 0.97. These experiments also showed that the MLP model significantly outperforms conventional linear multiple regression models, mainly due to essential nonlinearity of structure-activity relationships.
Our research demonstrates that biological activity of HAs extracted from peat samples can be estimated using an artificial neural network model trained on infrared and visible spectra.
•Humic acids demonstrate highly variable bioactivity depending on chemical composition.•Biological activity of humic acids can be estimated using infrared spectrometry data.•The proposed screening method allows fast and inexpensive preselection of peat samples.</abstract><cop>Netherlands</cop><pub>Elsevier Inc</pub><pmid>32784018</pmid><doi>10.1016/j.envres.2020.109999</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-4779-9820</orcidid></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0013-9351 |
ispartof | Environmental research, 2020-12, Vol.191, p.109999-109999, Article 109999 |
issn | 0013-9351 1096-0953 |
language | eng |
recordid | cdi_proquest_miscellaneous_2434060463 |
source | MEDLINE; ScienceDirect Journals (5 years ago - present) |
subjects | Biological activity Humic acids Humic Substances - analysis Macrophages Network model Neural Networks, Computer Peat Polycyclic Aromatic Hydrocarbons Quantitative Structure-Activity Relationship Soil Visible and infrared spectroscopy |
title | New artificial network model to estimate biological activity of peat humic acids |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-11T13%3A33%3A18IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=New%20artificial%20network%20model%20to%20estimate%20biological%20activity%20of%20peat%20humic%20acids&rft.jtitle=Environmental%20research&rft.au=Zykova,%20Maria%20V.&rft.date=2020-12&rft.volume=191&rft.spage=109999&rft.epage=109999&rft.pages=109999-109999&rft.artnum=109999&rft.issn=0013-9351&rft.eissn=1096-0953&rft_id=info:doi/10.1016/j.envres.2020.109999&rft_dat=%3Cproquest_cross%3E2434060463%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2434060463&rft_id=info:pmid/32784018&rft_els_id=S0013935120308963&rfr_iscdi=true |