The role of vibronic modes in formation of red antenna states of cyanobacterial PSI
Cyanobacterial photosystem I (PSI) constitutes monomeric and trimeric pigment–protein complexes whose optical properties are marked by the presence of long-wavelength absorption bands. In spite of numerous experimental studies, the nature of these bands is still under debate and requires intensive t...
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description | Cyanobacterial photosystem I (PSI) constitutes monomeric and trimeric pigment–protein complexes whose optical properties are marked by the presence of long-wavelength absorption bands. In spite of numerous experimental studies, the nature of these bands is still under debate and requires intensive theoretical analysis. Collecting together the data of linear spectroscopy and single-molecule spectroscopy (SMS) of PSI from
Arthrospira platensis
, we performed quantum modeling of the optical response based on molecular exciton theory (ET) and the multimode Brownian oscillator model (MBOM). Applying MBOM, the spectra of the red antenna state were calculated considering a particular for each red state adjustment of the low-frequency vibronic modes. Within the framework of our PSI exciton model it was shown that the coupling energy between antenna chlorophylls cannot be a factor of the red states formation, thus the long-wavelength bands are calculated without attribution to so-called antenna red chlorophylls. By the fitting of Huang–Rhys factors and frequencies for the lowest vibronic modes, we were able to reproduce the effects of strong and weak electron–phonon coupling experimentally observed in SMS spectra of red antenna states. Based on our theoretical calculations and also analysis of existing crystal structures of cyanobacterial PSI, we assumed that long-wavelength Chls can be localized in the peripheral protein subunits containing one or two pigment molecules. |
doi_str_mv | 10.1007/s11120-020-00779-y |
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Arthrospira platensis
, we performed quantum modeling of the optical response based on molecular exciton theory (ET) and the multimode Brownian oscillator model (MBOM). Applying MBOM, the spectra of the red antenna state were calculated considering a particular for each red state adjustment of the low-frequency vibronic modes. Within the framework of our PSI exciton model it was shown that the coupling energy between antenna chlorophylls cannot be a factor of the red states formation, thus the long-wavelength bands are calculated without attribution to so-called antenna red chlorophylls. By the fitting of Huang–Rhys factors and frequencies for the lowest vibronic modes, we were able to reproduce the effects of strong and weak electron–phonon coupling experimentally observed in SMS spectra of red antenna states. Based on our theoretical calculations and also analysis of existing crystal structures of cyanobacterial PSI, we assumed that long-wavelength Chls can be localized in the peripheral protein subunits containing one or two pigment molecules.</description><identifier>ISSN: 0166-8595</identifier><identifier>EISSN: 1573-5079</identifier><identifier>DOI: 10.1007/s11120-020-00779-y</identifier><identifier>PMID: 32766996</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Analysis ; Antennas ; Antennas (Electronics) ; Biochemistry ; Biomedical and Life Sciences ; Crystals ; Life Sciences ; Optical properties ; Original Article ; Photosystem I ; Plant Genetics and Genomics ; Plant Physiology ; Plant Sciences ; Spectroscopy ; Spectrum analysis ; Structure ; Wavelength</subject><ispartof>Photosynthesis research, 2020-12, Vol.146 (1-3), p.75-86</ispartof><rights>Springer Nature B.V. 2020</rights><rights>COPYRIGHT 2020 Springer</rights><rights>Springer Nature B.V. 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c448t-bf1f43707431e613947a51d87ac91cf05b9927548fe33bde755d2b999444ac543</citedby><cites>FETCH-LOGICAL-c448t-bf1f43707431e613947a51d87ac91cf05b9927548fe33bde755d2b999444ac543</cites><orcidid>0000-0002-5955-6092</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11120-020-00779-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11120-020-00779-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,778,782,27907,27908,41471,42540,51302</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32766996$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Pishchalnikov, Roman Y.</creatorcontrib><creatorcontrib>Shubin, Vladimir. V.</creatorcontrib><creatorcontrib>Razjivin, Andrei. P.</creatorcontrib><title>The role of vibronic modes in formation of red antenna states of cyanobacterial PSI</title><title>Photosynthesis research</title><addtitle>Photosynth Res</addtitle><addtitle>Photosynth Res</addtitle><description>Cyanobacterial photosystem I (PSI) constitutes monomeric and trimeric pigment–protein complexes whose optical properties are marked by the presence of long-wavelength absorption bands. In spite of numerous experimental studies, the nature of these bands is still under debate and requires intensive theoretical analysis. Collecting together the data of linear spectroscopy and single-molecule spectroscopy (SMS) of PSI from
Arthrospira platensis
, we performed quantum modeling of the optical response based on molecular exciton theory (ET) and the multimode Brownian oscillator model (MBOM). Applying MBOM, the spectra of the red antenna state were calculated considering a particular for each red state adjustment of the low-frequency vibronic modes. Within the framework of our PSI exciton model it was shown that the coupling energy between antenna chlorophylls cannot be a factor of the red states formation, thus the long-wavelength bands are calculated without attribution to so-called antenna red chlorophylls. By the fitting of Huang–Rhys factors and frequencies for the lowest vibronic modes, we were able to reproduce the effects of strong and weak electron–phonon coupling experimentally observed in SMS spectra of red antenna states. Based on our theoretical calculations and also analysis of existing crystal structures of cyanobacterial PSI, we assumed that long-wavelength Chls can be localized in the peripheral protein subunits containing one or two pigment molecules.</description><subject>Analysis</subject><subject>Antennas</subject><subject>Antennas (Electronics)</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Crystals</subject><subject>Life Sciences</subject><subject>Optical properties</subject><subject>Original Article</subject><subject>Photosystem I</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Spectroscopy</subject><subject>Spectrum analysis</subject><subject>Structure</subject><subject>Wavelength</subject><issn>0166-8595</issn><issn>1573-5079</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU9r3DAQxUVpabbbfoEeiqGX9uBUsiTLOobQPwuBhmx6FrI82irYUirJofvtK-O0JTkEMQhmfu8x0kPoLcGnBGPxKRFCGlzjpbAQsj4-QxvCBa05FvI52mDStnXHJT9Br1K6wRh3LaEv0QltRNtK2W7Q_vonVDGMUAVb3bk-Bu9MNYUBUuV8ZUOcdHbBL-MIQ6V9Bu91lbLOBSldc9Q-9NpkiE6P1eV-9xq9sHpM8Ob-3qIfXz5fn3-rL75_3Z2fXdSGsS7XvSWWUYEFowTKXpIJzcnQCW0kMRbzXspGcNZZoLQfQHA-NKUnGWPacEa36MPqexvDrxlSVpNLBsZRewhzUk0x7hreFO8tev8IvQlz9GW7QgnCu_JhC3W6Ugc9gnLehhy1KWeAyZngwbrSP2upbLAgHS6Cjw8EhcnwOx_0nJLa7a8ess3KmhhSimDVbXSTjkdFsFryVGueCi-15KmORfTufu-5n2D4J_kbYAHoCqQy8geI_x_2hO0f7FaoTw</recordid><startdate>20201201</startdate><enddate>20201201</enddate><creator>Pishchalnikov, Roman Y.</creator><creator>Shubin, Vladimir. 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V. ; Razjivin, Andrei. P.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c448t-bf1f43707431e613947a51d87ac91cf05b9927548fe33bde755d2b999444ac543</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Analysis</topic><topic>Antennas</topic><topic>Antennas (Electronics)</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Crystals</topic><topic>Life Sciences</topic><topic>Optical properties</topic><topic>Original Article</topic><topic>Photosystem I</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Spectroscopy</topic><topic>Spectrum analysis</topic><topic>Structure</topic><topic>Wavelength</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Pishchalnikov, Roman Y.</creatorcontrib><creatorcontrib>Shubin, Vladimir. 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V.</au><au>Razjivin, Andrei. P.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The role of vibronic modes in formation of red antenna states of cyanobacterial PSI</atitle><jtitle>Photosynthesis research</jtitle><stitle>Photosynth Res</stitle><addtitle>Photosynth Res</addtitle><date>2020-12-01</date><risdate>2020</risdate><volume>146</volume><issue>1-3</issue><spage>75</spage><epage>86</epage><pages>75-86</pages><issn>0166-8595</issn><eissn>1573-5079</eissn><abstract>Cyanobacterial photosystem I (PSI) constitutes monomeric and trimeric pigment–protein complexes whose optical properties are marked by the presence of long-wavelength absorption bands. In spite of numerous experimental studies, the nature of these bands is still under debate and requires intensive theoretical analysis. Collecting together the data of linear spectroscopy and single-molecule spectroscopy (SMS) of PSI from
Arthrospira platensis
, we performed quantum modeling of the optical response based on molecular exciton theory (ET) and the multimode Brownian oscillator model (MBOM). Applying MBOM, the spectra of the red antenna state were calculated considering a particular for each red state adjustment of the low-frequency vibronic modes. Within the framework of our PSI exciton model it was shown that the coupling energy between antenna chlorophylls cannot be a factor of the red states formation, thus the long-wavelength bands are calculated without attribution to so-called antenna red chlorophylls. By the fitting of Huang–Rhys factors and frequencies for the lowest vibronic modes, we were able to reproduce the effects of strong and weak electron–phonon coupling experimentally observed in SMS spectra of red antenna states. Based on our theoretical calculations and also analysis of existing crystal structures of cyanobacterial PSI, we assumed that long-wavelength Chls can be localized in the peripheral protein subunits containing one or two pigment molecules.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>32766996</pmid><doi>10.1007/s11120-020-00779-y</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-5955-6092</orcidid></addata></record> |
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subjects | Analysis Antennas Antennas (Electronics) Biochemistry Biomedical and Life Sciences Crystals Life Sciences Optical properties Original Article Photosystem I Plant Genetics and Genomics Plant Physiology Plant Sciences Spectroscopy Spectrum analysis Structure Wavelength |
title | The role of vibronic modes in formation of red antenna states of cyanobacterial PSI |
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