Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea

A yellowish-brown-coloured bacterium, designated strain JGD-17 T , was isolated from a tidal flat of Janggu-do, Garorim bay, Taean-gun, Chungcheongbuk-do, Republic of Korea. Cells were Gram-stain-negative, aerobic, non-flagellated and long-rod-shaped. Growth was observed at 20–45 °C (optimum, 25–30 ...

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Veröffentlicht in:International journal of systematic and evolutionary microbiology 2020-08, Vol.70 (8), p.4555-4561
Hauptverfasser: Kim, Dongjun, Yoo, Yeonjae, Khim, Jong Seong, Yang, Dongmin, Pathiraja, Duleepa, Choi, In-Geol, Kim, Jae-Jin
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container_title International journal of systematic and evolutionary microbiology
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creator Kim, Dongjun
Yoo, Yeonjae
Khim, Jong Seong
Yang, Dongmin
Pathiraja, Duleepa
Choi, In-Geol
Kim, Jae-Jin
description A yellowish-brown-coloured bacterium, designated strain JGD-17 T , was isolated from a tidal flat of Janggu-do, Garorim bay, Taean-gun, Chungcheongbuk-do, Republic of Korea. Cells were Gram-stain-negative, aerobic, non-flagellated and long-rod-shaped. Growth was observed at 20–45 °C (optimum, 25–30 °C), at pH 6.0–10.0 (9.0) and with 1–5 % (w/v) NaCl (1–3 %). Results of 16S rRNA gene sequence analysis indicated that strain JGD-17 T was closely related to Muricauda nanhaiensis SM1704 T (96.1 %), Muricauda olearia CL-SS4 T (95.0 %), Muricauda beolgyonensis BB-My12 T (94.9 %), Muricauda marina H19-56 T (94.7 %) and Muricauda indica 3PC125-7 T (94.5 %). The ranges of values for the average nucleotide identity and digital DNA–DNA hybridization analyses with related strains were 71.3–74.1 % and 16.9–18.2 %. The genomic DNA G+C content was 41.1 mol%. Phylogenetic analysis using the neighbour-joining method showed that strain JGD-17 T formed a clade with Muricauda nanhaiensis SM1704 T , Muricauda lutaonensis CC-HSB-11 T , Muricauda lutea CSW06 T and Muricauda pacifica SM027 T . The major fatty acids were iso-C 15 : 0 (26.9 %), iso-C 15 : 1 G (19.5 %) and iso-C 17 : 0 3-OH (12.7 %). The predominant respiratory quinone was menaquinone-6. The polar lipids were phosphatidylethanolamine, an unidentified aminolipid, an unidentified phospholipid and two unidentified lipids. On the basis of phylogenetic, phenotypic and chemotaxonomic characteristics, strain JGD-17 T represents a novel species within the genus Muricauda , for which the name Muricauda ochracea sp. nov. is proposed. The type strain is JGD-17 T (=KCTC 72732 T =KACC 21486 T =JCM 33817 T ).
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Cells were Gram-stain-negative, aerobic, non-flagellated and long-rod-shaped. Growth was observed at 20–45 °C (optimum, 25–30 °C), at pH 6.0–10.0 (9.0) and with 1–5 % (w/v) NaCl (1–3 %). Results of 16S rRNA gene sequence analysis indicated that strain JGD-17 T was closely related to Muricauda nanhaiensis SM1704 T (96.1 %), Muricauda olearia CL-SS4 T (95.0 %), Muricauda beolgyonensis BB-My12 T (94.9 %), Muricauda marina H19-56 T (94.7 %) and Muricauda indica 3PC125-7 T (94.5 %). The ranges of values for the average nucleotide identity and digital DNA–DNA hybridization analyses with related strains were 71.3–74.1 % and 16.9–18.2 %. The genomic DNA G+C content was 41.1 mol%. Phylogenetic analysis using the neighbour-joining method showed that strain JGD-17 T formed a clade with Muricauda nanhaiensis SM1704 T , Muricauda lutaonensis CC-HSB-11 T , Muricauda lutea CSW06 T and Muricauda pacifica SM027 T . The major fatty acids were iso-C 15 : 0 (26.9 %), iso-C 15 : 1 G (19.5 %) and iso-C 17 : 0 3-OH (12.7 %). The predominant respiratory quinone was menaquinone-6. The polar lipids were phosphatidylethanolamine, an unidentified aminolipid, an unidentified phospholipid and two unidentified lipids. On the basis of phylogenetic, phenotypic and chemotaxonomic characteristics, strain JGD-17 T represents a novel species within the genus Muricauda , for which the name Muricauda ochracea sp. nov. is proposed. 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Cells were Gram-stain-negative, aerobic, non-flagellated and long-rod-shaped. Growth was observed at 20–45 °C (optimum, 25–30 °C), at pH 6.0–10.0 (9.0) and with 1–5 % (w/v) NaCl (1–3 %). Results of 16S rRNA gene sequence analysis indicated that strain JGD-17 T was closely related to Muricauda nanhaiensis SM1704 T (96.1 %), Muricauda olearia CL-SS4 T (95.0 %), Muricauda beolgyonensis BB-My12 T (94.9 %), Muricauda marina H19-56 T (94.7 %) and Muricauda indica 3PC125-7 T (94.5 %). The ranges of values for the average nucleotide identity and digital DNA–DNA hybridization analyses with related strains were 71.3–74.1 % and 16.9–18.2 %. The genomic DNA G+C content was 41.1 mol%. Phylogenetic analysis using the neighbour-joining method showed that strain JGD-17 T formed a clade with Muricauda nanhaiensis SM1704 T , Muricauda lutaonensis CC-HSB-11 T , Muricauda lutea CSW06 T and Muricauda pacifica SM027 T . The major fatty acids were iso-C 15 : 0 (26.9 %), iso-C 15 : 1 G (19.5 %) and iso-C 17 : 0 3-OH (12.7 %). The predominant respiratory quinone was menaquinone-6. The polar lipids were phosphatidylethanolamine, an unidentified aminolipid, an unidentified phospholipid and two unidentified lipids. On the basis of phylogenetic, phenotypic and chemotaxonomic characteristics, strain JGD-17 T represents a novel species within the genus Muricauda , for which the name Muricauda ochracea sp. nov. is proposed. 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Cells were Gram-stain-negative, aerobic, non-flagellated and long-rod-shaped. Growth was observed at 20–45 °C (optimum, 25–30 °C), at pH 6.0–10.0 (9.0) and with 1–5 % (w/v) NaCl (1–3 %). Results of 16S rRNA gene sequence analysis indicated that strain JGD-17 T was closely related to Muricauda nanhaiensis SM1704 T (96.1 %), Muricauda olearia CL-SS4 T (95.0 %), Muricauda beolgyonensis BB-My12 T (94.9 %), Muricauda marina H19-56 T (94.7 %) and Muricauda indica 3PC125-7 T (94.5 %). The ranges of values for the average nucleotide identity and digital DNA–DNA hybridization analyses with related strains were 71.3–74.1 % and 16.9–18.2 %. The genomic DNA G+C content was 41.1 mol%. Phylogenetic analysis using the neighbour-joining method showed that strain JGD-17 T formed a clade with Muricauda nanhaiensis SM1704 T , Muricauda lutaonensis CC-HSB-11 T , Muricauda lutea CSW06 T and Muricauda pacifica SM027 T . The major fatty acids were iso-C 15 : 0 (26.9 %), iso-C 15 : 1 G (19.5 %) and iso-C 17 : 0 3-OH (12.7 %). The predominant respiratory quinone was menaquinone-6. The polar lipids were phosphatidylethanolamine, an unidentified aminolipid, an unidentified phospholipid and two unidentified lipids. On the basis of phylogenetic, phenotypic and chemotaxonomic characteristics, strain JGD-17 T represents a novel species within the genus Muricauda , for which the name Muricauda ochracea sp. nov. is proposed. The type strain is JGD-17 T (=KCTC 72732 T =KACC 21486 T =JCM 33817 T ).</abstract><doi>10.1099/ijsem.0.004312</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0001-7403-6274</orcidid><orcidid>https://orcid.org/0000-0001-8990-2139</orcidid><oa>free_for_read</oa></addata></record>
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title Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea
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