Mucilaginibacter agri sp. nov. and Mucilaginibacter humi sp. nov., isolated from soil
Two Gram-stain-negative, facultative anaerobic and non-motile bacteria, strains R11 and S1162 , were isolated from soil in the Republic of Korea. Both strains were catalase- and oxidase-positive and contained menaquinone-7 as the major isoprenoid quinone. Strain R11 contained summed feature 3 (C ω7...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2020-08, Vol.70 (8), p.4616-4622 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Seo, Ye Lin Khan, Shehzad Abid Kim, Hyung Min Chun, Byung Hee Han, Dong Min Jeon, Che Ok |
| description | Two Gram-stain-negative, facultative anaerobic and non-motile bacteria, strains R11
and S1162
, were isolated from soil in the Republic of Korea. Both strains were catalase- and oxidase-positive and contained menaquinone-7 as the major isoprenoid quinone. Strain R11
contained summed feature 3 (C
ω7
and/or C
ω6
), iso-C
, C
and iso-C
3-OH as major fatty acids and phosphatidylethanolamine, an unidentified aminophospholipid and an unidentified aminolipid as major polar lipids; while strain S1162
contained summed feature 3 (C
ω7
and/or C
ω6
), iso-C
, iso-C
3-OH, C
and summed feature 9 (10-methyl C
and/or iso-C
ω9
) as major fatty acids and phosphatidylethanolamine and an unidentified aminophospholipid as major polar lipids. The DNA G+C contents of strains R11
and S1162
calculated from their whole genomes were 42.7 and 42.9 mol%, respectively. Results of phylogenetic analysis based on 16S rRNA gene sequences showed that strain R11
formed a phylogenetic lineage with
YC7004
and strain S1162
formed a distinct phyletic lineage from closely related type strains within the genus
. Strains R11
and S1162
were most closely related to
YC7004
and
BXN5-31
with 97.78 and 97.23% 16S rRNA gene sequence similarities, respectively. On the basis of phenotypic, chemotaxonomic and molecular analysis, strains R11
and S1162
represent two novel species of the genus
, for which the names
sp. nov. and
sp. nov. are proposed, respectively. The type strains of
and
are R11
(=KACC 21228
=JCM 33472
) and S1162
(=KACC 21669
=JCM 33916
), respectively. |
| doi_str_mv | 10.1099/ijsem.0.004321 |
| format | Article |
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and S1162
, were isolated from soil in the Republic of Korea. Both strains were catalase- and oxidase-positive and contained menaquinone-7 as the major isoprenoid quinone. Strain R11
contained summed feature 3 (C
ω7
and/or C
ω6
), iso-C
, C
and iso-C
3-OH as major fatty acids and phosphatidylethanolamine, an unidentified aminophospholipid and an unidentified aminolipid as major polar lipids; while strain S1162
contained summed feature 3 (C
ω7
and/or C
ω6
), iso-C
, iso-C
3-OH, C
and summed feature 9 (10-methyl C
and/or iso-C
ω9
) as major fatty acids and phosphatidylethanolamine and an unidentified aminophospholipid as major polar lipids. The DNA G+C contents of strains R11
and S1162
calculated from their whole genomes were 42.7 and 42.9 mol%, respectively. Results of phylogenetic analysis based on 16S rRNA gene sequences showed that strain R11
formed a phylogenetic lineage with
YC7004
and strain S1162
formed a distinct phyletic lineage from closely related type strains within the genus
. Strains R11
and S1162
were most closely related to
YC7004
and
BXN5-31
with 97.78 and 97.23% 16S rRNA gene sequence similarities, respectively. On the basis of phenotypic, chemotaxonomic and molecular analysis, strains R11
and S1162
represent two novel species of the genus
, for which the names
sp. nov. and
sp. nov. are proposed, respectively. The type strains of
and
are R11
(=KACC 21228
=JCM 33472
) and S1162
(=KACC 21669
=JCM 33916
), respectively.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.004321</identifier><identifier>PMID: 32667873</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Typing Techniques ; Bacteroidetes - classification ; Bacteroidetes - isolation & purification ; Base Composition ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Nucleic Acid Hybridization ; Phospholipids - chemistry ; Phylogeny ; Republic of Korea ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil Microbiology ; Vitamin K 2 - analogs & derivatives ; Vitamin K 2 - chemistry</subject><ispartof>International journal of systematic and evolutionary microbiology, 2020-08, Vol.70 (8), p.4616-4622</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c335t-94412f7e7d901f97bb5876fd13a12fcd9ea3a5b61928430032b2174e99035fc3</citedby><cites>FETCH-LOGICAL-c335t-94412f7e7d901f97bb5876fd13a12fcd9ea3a5b61928430032b2174e99035fc3</cites><orcidid>0000-0002-1075-010X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32667873$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Seo, Ye Lin</creatorcontrib><creatorcontrib>Khan, Shehzad Abid</creatorcontrib><creatorcontrib>Kim, Hyung Min</creatorcontrib><creatorcontrib>Chun, Byung Hee</creatorcontrib><creatorcontrib>Han, Dong Min</creatorcontrib><creatorcontrib>Jeon, Che Ok</creatorcontrib><title>Mucilaginibacter agri sp. nov. and Mucilaginibacter humi sp. nov., isolated from soil</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Two Gram-stain-negative, facultative anaerobic and non-motile bacteria, strains R11
and S1162
, were isolated from soil in the Republic of Korea. Both strains were catalase- and oxidase-positive and contained menaquinone-7 as the major isoprenoid quinone. Strain R11
contained summed feature 3 (C
ω7
and/or C
ω6
), iso-C
, C
and iso-C
3-OH as major fatty acids and phosphatidylethanolamine, an unidentified aminophospholipid and an unidentified aminolipid as major polar lipids; while strain S1162
contained summed feature 3 (C
ω7
and/or C
ω6
), iso-C
, iso-C
3-OH, C
and summed feature 9 (10-methyl C
and/or iso-C
ω9
) as major fatty acids and phosphatidylethanolamine and an unidentified aminophospholipid as major polar lipids. The DNA G+C contents of strains R11
and S1162
calculated from their whole genomes were 42.7 and 42.9 mol%, respectively. Results of phylogenetic analysis based on 16S rRNA gene sequences showed that strain R11
formed a phylogenetic lineage with
YC7004
and strain S1162
formed a distinct phyletic lineage from closely related type strains within the genus
. Strains R11
and S1162
were most closely related to
YC7004
and
BXN5-31
with 97.78 and 97.23% 16S rRNA gene sequence similarities, respectively. On the basis of phenotypic, chemotaxonomic and molecular analysis, strains R11
and S1162
represent two novel species of the genus
, for which the names
sp. nov. and
sp. nov. are proposed, respectively. The type strains of
and
are R11
(=KACC 21228
=JCM 33472
) and S1162
(=KACC 21669
=JCM 33916
), respectively.</description><subject>Bacterial Typing Techniques</subject><subject>Bacteroidetes - classification</subject><subject>Bacteroidetes - isolation & purification</subject><subject>Base Composition</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Nucleic Acid Hybridization</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>Republic of Korea</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><subject>Vitamin K 2 - analogs & derivatives</subject><subject>Vitamin K 2 - chemistry</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNplkD1PwzAQhi0EolBYGZFHBhLOH7HrEVV8SUUsZbacxC6ukrjYCRL_nkBLGZju9Oq596QHoQsCOQGlbvw62TaHHIAzSg7QCeFCZAUwfrjfqZig05TWAGMAcIwmjAohZ5KdoNfnofKNWfnOl6bqbcRmFT1Omxx34SPHpqvxP-RtaP-Qa-xTaExva-xiaHEKvjlDR840yZ7v5hQt7--W88ds8fLwNL9dZBVjRZ8pzgl10spaAXFKlmUxk8LVhJkxr2plDTNFKYiiM84AGC0pkdwqBaxwFZuiq23tJob3waZetz5VtmlMZ8OQNOWUjy8KRkY036JVDClF6_Qm-tbET01Af5vUPyY16K3J8eBy1z2Ura33-K869gUjiW5v</recordid><startdate>202008</startdate><enddate>202008</enddate><creator>Seo, Ye Lin</creator><creator>Khan, Shehzad Abid</creator><creator>Kim, Hyung Min</creator><creator>Chun, Byung Hee</creator><creator>Han, Dong Min</creator><creator>Jeon, Che Ok</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-1075-010X</orcidid></search><sort><creationdate>202008</creationdate><title>Mucilaginibacter agri sp. nov. and Mucilaginibacter humi sp. nov., isolated from soil</title><author>Seo, Ye Lin ; Khan, Shehzad Abid ; Kim, Hyung Min ; Chun, Byung Hee ; Han, Dong Min ; Jeon, Che Ok</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c335t-94412f7e7d901f97bb5876fd13a12fcd9ea3a5b61928430032b2174e99035fc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Bacterial Typing Techniques</topic><topic>Bacteroidetes - classification</topic><topic>Bacteroidetes - isolation & purification</topic><topic>Base Composition</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Nucleic Acid Hybridization</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>Republic of Korea</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><topic>Vitamin K 2 - analogs & derivatives</topic><topic>Vitamin K 2 - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Seo, Ye Lin</creatorcontrib><creatorcontrib>Khan, Shehzad Abid</creatorcontrib><creatorcontrib>Kim, Hyung Min</creatorcontrib><creatorcontrib>Chun, Byung Hee</creatorcontrib><creatorcontrib>Han, Dong Min</creatorcontrib><creatorcontrib>Jeon, Che Ok</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Seo, Ye Lin</au><au>Khan, Shehzad Abid</au><au>Kim, Hyung Min</au><au>Chun, Byung Hee</au><au>Han, Dong Min</au><au>Jeon, Che Ok</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mucilaginibacter agri sp. nov. and Mucilaginibacter humi sp. nov., isolated from soil</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2020-08</date><risdate>2020</risdate><volume>70</volume><issue>8</issue><spage>4616</spage><epage>4622</epage><pages>4616-4622</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Two Gram-stain-negative, facultative anaerobic and non-motile bacteria, strains R11
and S1162
, were isolated from soil in the Republic of Korea. Both strains were catalase- and oxidase-positive and contained menaquinone-7 as the major isoprenoid quinone. Strain R11
contained summed feature 3 (C
ω7
and/or C
ω6
), iso-C
, C
and iso-C
3-OH as major fatty acids and phosphatidylethanolamine, an unidentified aminophospholipid and an unidentified aminolipid as major polar lipids; while strain S1162
contained summed feature 3 (C
ω7
and/or C
ω6
), iso-C
, iso-C
3-OH, C
and summed feature 9 (10-methyl C
and/or iso-C
ω9
) as major fatty acids and phosphatidylethanolamine and an unidentified aminophospholipid as major polar lipids. The DNA G+C contents of strains R11
and S1162
calculated from their whole genomes were 42.7 and 42.9 mol%, respectively. Results of phylogenetic analysis based on 16S rRNA gene sequences showed that strain R11
formed a phylogenetic lineage with
YC7004
and strain S1162
formed a distinct phyletic lineage from closely related type strains within the genus
. Strains R11
and S1162
were most closely related to
YC7004
and
BXN5-31
with 97.78 and 97.23% 16S rRNA gene sequence similarities, respectively. On the basis of phenotypic, chemotaxonomic and molecular analysis, strains R11
and S1162
represent two novel species of the genus
, for which the names
sp. nov. and
sp. nov. are proposed, respectively. The type strains of
and
are R11
(=KACC 21228
=JCM 33472
) and S1162
(=KACC 21669
=JCM 33916
), respectively.</abstract><cop>England</cop><pmid>32667873</pmid><doi>10.1099/ijsem.0.004321</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0002-1075-010X</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1466-5026 |
| ispartof | International journal of systematic and evolutionary microbiology, 2020-08, Vol.70 (8), p.4616-4622 |
| issn | 1466-5026 1466-5034 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2424441531 |
| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Bacteroidetes - classification Bacteroidetes - isolation & purification Base Composition DNA, Bacterial - genetics Fatty Acids - chemistry Nucleic Acid Hybridization Phospholipids - chemistry Phylogeny Republic of Korea RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil Microbiology Vitamin K 2 - analogs & derivatives Vitamin K 2 - chemistry |
| title | Mucilaginibacter agri sp. nov. and Mucilaginibacter humi sp. nov., isolated from soil |
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