Revealing the Impact of the Environment on Cistanche salsa: From Global Ecological Regionalization to Soil Microbial Community Characteristics
To understand the regulatory relationship between the environment and Cistanche salsa, here we integrated the macro- and microdimension methods. From a macroperspective, the MaxEnt model indicated that countries along the Belt and Road Initiative, such as China, Egypt, and Libya, were particularly s...
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Veröffentlicht in: | Journal of agricultural and food chemistry 2020-08, Vol.68 (32), p.8720-8731 |
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creator | Sun, Xiao Pei, Jin Lin, Yu-lin Li, Bao-li Zhang, Li Ahmad, Bashir Huang, Lin-Fang |
description | To understand the regulatory relationship between the environment and Cistanche salsa, here we integrated the macro- and microdimension methods. From a macroperspective, the MaxEnt model indicated that countries along the Belt and Road Initiative, such as China, Egypt, and Libya, were particularly suitable for growth of C. salsa from ancient times (Last Glacial Maximum and mid-Holocene) to the future (2050 and 2070). The Jackknife test revealed that precipitation is an important ecological factor that affects C. salsa’s distribution. From a microperspective, 16S rRNA amplicon sequencing data showed that the soil microbial communities of three ecotypes (desert–steppe, grassland, and gravel–desert) were significantly different (p < 0.001). Core microbiome analysis demonstrated that the bacterial genera Arthrobacter, Sphingomonas, and Bacillus were enriched core taxa of C. salsa. LEfSe and random forest were used to excavate the Gillisia (desert–steppe), Flavisolibacter (grassland), and Variibacter (gravel–desert) as biomarkers that can distinguish among microbial communities from the three ecotypes. The prediction profile showed that the metabolic function of the microbial community was enriched in metabolic pathways and environmental information processing. Correlation analyses revealed that the altitude, precipitation of the warmest quarter (bio18), mean diurnal range (bio2), and mean temperature of the warmest quarter (bio10) were important ecological factors that affect the composition of soil microbial communities. This work provided new insights into the regulatory relationship among the suitable distribution of C. salsa, soil microbial communities, and ecological drivers. Moreover, it deepened the understanding of the interaction between desert plants and ecological factors in arid environments. |
doi_str_mv | 10.1021/acs.jafc.0c01568 |
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From a macroperspective, the MaxEnt model indicated that countries along the Belt and Road Initiative, such as China, Egypt, and Libya, were particularly suitable for growth of C. salsa from ancient times (Last Glacial Maximum and mid-Holocene) to the future (2050 and 2070). The Jackknife test revealed that precipitation is an important ecological factor that affects C. salsa’s distribution. From a microperspective, 16S rRNA amplicon sequencing data showed that the soil microbial communities of three ecotypes (desert–steppe, grassland, and gravel–desert) were significantly different (p < 0.001). Core microbiome analysis demonstrated that the bacterial genera Arthrobacter, Sphingomonas, and Bacillus were enriched core taxa of C. salsa. LEfSe and random forest were used to excavate the Gillisia (desert–steppe), Flavisolibacter (grassland), and Variibacter (gravel–desert) as biomarkers that can distinguish among microbial communities from the three ecotypes. The prediction profile showed that the metabolic function of the microbial community was enriched in metabolic pathways and environmental information processing. Correlation analyses revealed that the altitude, precipitation of the warmest quarter (bio18), mean diurnal range (bio2), and mean temperature of the warmest quarter (bio10) were important ecological factors that affect the composition of soil microbial communities. This work provided new insights into the regulatory relationship among the suitable distribution of C. salsa, soil microbial communities, and ecological drivers. Moreover, it deepened the understanding of the interaction between desert plants and ecological factors in arid environments.</description><identifier>ISSN: 0021-8561</identifier><identifier>EISSN: 1520-5118</identifier><identifier>DOI: 10.1021/acs.jafc.0c01568</identifier><identifier>PMID: 32658471</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Bacteria - classification ; Bacteria - genetics ; Bacteria - isolation & purification ; Bacteria - metabolism ; Cistanche - growth & development ; Cistanche - microbiology ; Ecosystem ; Microbiota ; Omics Technologies Applied to Agriculture and Food ; Soil Microbiology ; Temperature</subject><ispartof>Journal of agricultural and food chemistry, 2020-08, Vol.68 (32), p.8720-8731</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a336t-33746b1f5fce0322f1e94687ac3dbf2bba893c73c8591e54f1356f7139454a833</citedby><cites>FETCH-LOGICAL-a336t-33746b1f5fce0322f1e94687ac3dbf2bba893c73c8591e54f1356f7139454a833</cites><orcidid>0000-0001-9169-3356 ; 0000-0002-6822-0603</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/acs.jafc.0c01568$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/acs.jafc.0c01568$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,776,780,2752,27053,27901,27902,56713,56763</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32658471$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sun, Xiao</creatorcontrib><creatorcontrib>Pei, Jin</creatorcontrib><creatorcontrib>Lin, Yu-lin</creatorcontrib><creatorcontrib>Li, Bao-li</creatorcontrib><creatorcontrib>Zhang, Li</creatorcontrib><creatorcontrib>Ahmad, Bashir</creatorcontrib><creatorcontrib>Huang, Lin-Fang</creatorcontrib><title>Revealing the Impact of the Environment on Cistanche salsa: From Global Ecological Regionalization to Soil Microbial Community Characteristics</title><title>Journal of agricultural and food chemistry</title><addtitle>J. Agric. Food Chem</addtitle><description>To understand the regulatory relationship between the environment and Cistanche salsa, here we integrated the macro- and microdimension methods. From a macroperspective, the MaxEnt model indicated that countries along the Belt and Road Initiative, such as China, Egypt, and Libya, were particularly suitable for growth of C. salsa from ancient times (Last Glacial Maximum and mid-Holocene) to the future (2050 and 2070). The Jackknife test revealed that precipitation is an important ecological factor that affects C. salsa’s distribution. From a microperspective, 16S rRNA amplicon sequencing data showed that the soil microbial communities of three ecotypes (desert–steppe, grassland, and gravel–desert) were significantly different (p < 0.001). Core microbiome analysis demonstrated that the bacterial genera Arthrobacter, Sphingomonas, and Bacillus were enriched core taxa of C. salsa. LEfSe and random forest were used to excavate the Gillisia (desert–steppe), Flavisolibacter (grassland), and Variibacter (gravel–desert) as biomarkers that can distinguish among microbial communities from the three ecotypes. The prediction profile showed that the metabolic function of the microbial community was enriched in metabolic pathways and environmental information processing. Correlation analyses revealed that the altitude, precipitation of the warmest quarter (bio18), mean diurnal range (bio2), and mean temperature of the warmest quarter (bio10) were important ecological factors that affect the composition of soil microbial communities. This work provided new insights into the regulatory relationship among the suitable distribution of C. salsa, soil microbial communities, and ecological drivers. Moreover, it deepened the understanding of the interaction between desert plants and ecological factors in arid environments.</description><subject>Bacteria - classification</subject><subject>Bacteria - genetics</subject><subject>Bacteria - isolation & purification</subject><subject>Bacteria - metabolism</subject><subject>Cistanche - growth & development</subject><subject>Cistanche - microbiology</subject><subject>Ecosystem</subject><subject>Microbiota</subject><subject>Omics Technologies Applied to Agriculture and Food</subject><subject>Soil Microbiology</subject><subject>Temperature</subject><issn>0021-8561</issn><issn>1520-5118</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kU1PwyAYx4nR6Hy5ezIcPdjJS6HUm2k2NdGYTD03FGFjaWFCu0Q_hJ9ZdNObJx7g9_wgzx-AU4zGGBF8KVUcL6VRY6QQZlzsgBFmBGUMY7ELRigxmWAcH4DDGJcIIcEKtA8OKOFM5AUegc-ZXmvZWjeH_ULDu24lVQ-9-dlN3NoG7zrt0pGDlY29dCpdRNlGeQWnwXfwpvWNbOFE-dbPrUrlTM-td0n6IftUwN7DJ29b-GBV8I1NROW7bnC2f4fVQob0og7JbVU8BnsmufXJdj0CL9PJc3Wb3T_e3FXX95mklPcZpUXOG2yYURpRQgzWZc5FIRV9bQxpGilKqgqqBCuxZrnBlHFTYFrmLJeC0iNwvvGugn8bdOzrzkal21Y67YdYk5zQohSM8ISiDZo-H2PQpl4F28nwXmNUf6dQpxTq7xTqbQqp5WxrH5pOv_41_I49ARcb4KfVDyFNK_7v-wKYcJUc</recordid><startdate>20200812</startdate><enddate>20200812</enddate><creator>Sun, Xiao</creator><creator>Pei, Jin</creator><creator>Lin, Yu-lin</creator><creator>Li, Bao-li</creator><creator>Zhang, Li</creator><creator>Ahmad, Bashir</creator><creator>Huang, Lin-Fang</creator><general>American Chemical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-9169-3356</orcidid><orcidid>https://orcid.org/0000-0002-6822-0603</orcidid></search><sort><creationdate>20200812</creationdate><title>Revealing the Impact of the Environment on Cistanche salsa: From Global Ecological Regionalization to Soil Microbial Community Characteristics</title><author>Sun, Xiao ; Pei, Jin ; Lin, Yu-lin ; Li, Bao-li ; Zhang, Li ; Ahmad, Bashir ; Huang, Lin-Fang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a336t-33746b1f5fce0322f1e94687ac3dbf2bba893c73c8591e54f1356f7139454a833</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Bacteria - classification</topic><topic>Bacteria - genetics</topic><topic>Bacteria - isolation & purification</topic><topic>Bacteria - metabolism</topic><topic>Cistanche - growth & development</topic><topic>Cistanche - microbiology</topic><topic>Ecosystem</topic><topic>Microbiota</topic><topic>Omics Technologies Applied to Agriculture and Food</topic><topic>Soil Microbiology</topic><topic>Temperature</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sun, Xiao</creatorcontrib><creatorcontrib>Pei, Jin</creatorcontrib><creatorcontrib>Lin, Yu-lin</creatorcontrib><creatorcontrib>Li, Bao-li</creatorcontrib><creatorcontrib>Zhang, Li</creatorcontrib><creatorcontrib>Ahmad, Bashir</creatorcontrib><creatorcontrib>Huang, Lin-Fang</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of agricultural and food chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sun, Xiao</au><au>Pei, Jin</au><au>Lin, Yu-lin</au><au>Li, Bao-li</au><au>Zhang, Li</au><au>Ahmad, Bashir</au><au>Huang, Lin-Fang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Revealing the Impact of the Environment on Cistanche salsa: From Global Ecological Regionalization to Soil Microbial Community Characteristics</atitle><jtitle>Journal of agricultural and food chemistry</jtitle><addtitle>J. Agric. Food Chem</addtitle><date>2020-08-12</date><risdate>2020</risdate><volume>68</volume><issue>32</issue><spage>8720</spage><epage>8731</epage><pages>8720-8731</pages><issn>0021-8561</issn><eissn>1520-5118</eissn><abstract>To understand the regulatory relationship between the environment and Cistanche salsa, here we integrated the macro- and microdimension methods. From a macroperspective, the MaxEnt model indicated that countries along the Belt and Road Initiative, such as China, Egypt, and Libya, were particularly suitable for growth of C. salsa from ancient times (Last Glacial Maximum and mid-Holocene) to the future (2050 and 2070). The Jackknife test revealed that precipitation is an important ecological factor that affects C. salsa’s distribution. From a microperspective, 16S rRNA amplicon sequencing data showed that the soil microbial communities of three ecotypes (desert–steppe, grassland, and gravel–desert) were significantly different (p < 0.001). Core microbiome analysis demonstrated that the bacterial genera Arthrobacter, Sphingomonas, and Bacillus were enriched core taxa of C. salsa. LEfSe and random forest were used to excavate the Gillisia (desert–steppe), Flavisolibacter (grassland), and Variibacter (gravel–desert) as biomarkers that can distinguish among microbial communities from the three ecotypes. The prediction profile showed that the metabolic function of the microbial community was enriched in metabolic pathways and environmental information processing. Correlation analyses revealed that the altitude, precipitation of the warmest quarter (bio18), mean diurnal range (bio2), and mean temperature of the warmest quarter (bio10) were important ecological factors that affect the composition of soil microbial communities. This work provided new insights into the regulatory relationship among the suitable distribution of C. salsa, soil microbial communities, and ecological drivers. 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subjects | Bacteria - classification Bacteria - genetics Bacteria - isolation & purification Bacteria - metabolism Cistanche - growth & development Cistanche - microbiology Ecosystem Microbiota Omics Technologies Applied to Agriculture and Food Soil Microbiology Temperature |
title | Revealing the Impact of the Environment on Cistanche salsa: From Global Ecological Regionalization to Soil Microbial Community Characteristics |
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