Automated labeling of the airway tree in terms of lobes based on deep learning of bifurcation point detection

This paper presents an automatic lobe-based labeling of airway tree method, which can detect the bifurcation points for reconstructing and labeling the airway tree from a computed tomography image. A deep learning-based network structure is designed to identify the four key bifurcation points. Then,...

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Veröffentlicht in:Medical & biological engineering & computing 2020-09, Vol.58 (9), p.2009-2024
Hauptverfasser: Wang, Manyang, Jin, Renchao, Jiang, Nanchuan, Liu, Hong, Jiang, Shan, Li, Kang, Zhou, XueXin
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container_end_page 2024
container_issue 9
container_start_page 2009
container_title Medical & biological engineering & computing
container_volume 58
creator Wang, Manyang
Jin, Renchao
Jiang, Nanchuan
Liu, Hong
Jiang, Shan
Li, Kang
Zhou, XueXin
description This paper presents an automatic lobe-based labeling of airway tree method, which can detect the bifurcation points for reconstructing and labeling the airway tree from a computed tomography image. A deep learning-based network structure is designed to identify the four key bifurcation points. Then, based on the detected bifurcation points, the entire airway tree is reconstructed by a new region-growing method. Finally, with the basic airway tree anatomy and topology knowledge, individual branches of the airway tree are classified into different categories in terms of pulmonary lobes. There are several advantages in our method such as the detection of the bifurcation points does not depend on the segmentation of airway tree and only four bifurcation points need to be manually labeled for each sample to prepare the training dataset. The segmentation of airway tree is guided by the detected points, which overcomes the difficulty of manual seed selection of conventional region-growing algorithm. In addition, the bifurcation points can help analyze the tree structure, which provides a basis for effective airway tree labeling. Experimental results show that our method is fast, stable, and the accuracy of our method is 97.85%, which is higher than that of the traditional skeleton-based method. Graphical Abstract The pipeline of our proposed lobe-based airway tree labeling method. Given a raw CT volume, a neural network structure is designed to predict major bifurcation points of airway tree. Based on the detected points, airway tree is reconstructed and labeled in terms of lobes
doi_str_mv 10.1007/s11517-020-02184-y
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A deep learning-based network structure is designed to identify the four key bifurcation points. Then, based on the detected bifurcation points, the entire airway tree is reconstructed by a new region-growing method. Finally, with the basic airway tree anatomy and topology knowledge, individual branches of the airway tree are classified into different categories in terms of pulmonary lobes. There are several advantages in our method such as the detection of the bifurcation points does not depend on the segmentation of airway tree and only four bifurcation points need to be manually labeled for each sample to prepare the training dataset. The segmentation of airway tree is guided by the detected points, which overcomes the difficulty of manual seed selection of conventional region-growing algorithm. In addition, the bifurcation points can help analyze the tree structure, which provides a basis for effective airway tree labeling. Experimental results show that our method is fast, stable, and the accuracy of our method is 97.85%, which is higher than that of the traditional skeleton-based method. Graphical Abstract The pipeline of our proposed lobe-based airway tree labeling method. Given a raw CT volume, a neural network structure is designed to predict major bifurcation points of airway tree. 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biological engineering &amp; computing</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Manyang</au><au>Jin, Renchao</au><au>Jiang, Nanchuan</au><au>Liu, Hong</au><au>Jiang, Shan</au><au>Li, Kang</au><au>Zhou, XueXin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Automated labeling of the airway tree in terms of lobes based on deep learning of bifurcation point detection</atitle><jtitle>Medical &amp; biological engineering &amp; computing</jtitle><stitle>Med Biol Eng Comput</stitle><date>2020-09-01</date><risdate>2020</risdate><volume>58</volume><issue>9</issue><spage>2009</spage><epage>2024</epage><pages>2009-2024</pages><issn>0140-0118</issn><eissn>1741-0444</eissn><abstract>This paper presents an automatic lobe-based labeling of airway tree method, which can detect the bifurcation points for reconstructing and labeling the airway tree from a computed tomography image. 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Experimental results show that our method is fast, stable, and the accuracy of our method is 97.85%, which is higher than that of the traditional skeleton-based method. Graphical Abstract The pipeline of our proposed lobe-based airway tree labeling method. Given a raw CT volume, a neural network structure is designed to predict major bifurcation points of airway tree. Based on the detected points, airway tree is reconstructed and labeled in terms of lobes</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><doi>10.1007/s11517-020-02184-y</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0002-1591-3510</orcidid></addata></record>
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source Business Source Complete; Springer Nature - Complete Springer Journals
subjects Algorithms
Bifurcations
Biomedical and Life Sciences
Biomedical Engineering and Bioengineering
Biomedicine
Branches
Computed tomography
Computer Applications
Deep learning
Human Physiology
Image reconstruction
Image segmentation
Imaging
Labeling
Lobes
Machine learning
Original Article
Radiology
Respiratory tract
Topology
title Automated labeling of the airway tree in terms of lobes based on deep learning of bifurcation point detection
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