Development and characterization of 14 microsatellites for the eastern chipmunk, Tamias striatus
The number of microsatellite markers currently available for the eastern chipmunk Tamias striatus provides limited capacity to achieve sufficient pedigree building for the study of their genetic structure and relatedness patterns. We developed microsatellite loci for the eastern chipmunk, a small ro...
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| Veröffentlicht in: | Molecular biology reports 2020-08, Vol.47 (8), p.6393-6397 |
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| creator | Vandal, Katherine Houle, Carolyne Archambault, Annie Réale, Denis Garant, Dany |
| description | The number of microsatellite markers currently available for the eastern chipmunk
Tamias striatus
provides limited capacity to achieve sufficient pedigree building for the study of their genetic structure and relatedness patterns. We developed microsatellite loci for the eastern chipmunk, a small rodent commonly found in eastern North America. More specifically, we report data for 14 loci and 50 individuals genotyped from a population in southern Québec, Canada. We found a number of alleles ranging from 5 to 21 and there was no linkage disequilibrium among locus. One locus deviated from Hardy–Weinberg equilibrium and had a high proportion of null alleles. Those loci will be used in addition to previously developed loci to improve the precision of parentage assignment and population genetics studies on this species. |
| doi_str_mv | 10.1007/s11033-020-05586-1 |
| format | Article |
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Tamias striatus
provides limited capacity to achieve sufficient pedigree building for the study of their genetic structure and relatedness patterns. We developed microsatellite loci for the eastern chipmunk, a small rodent commonly found in eastern North America. More specifically, we report data for 14 loci and 50 individuals genotyped from a population in southern Québec, Canada. We found a number of alleles ranging from 5 to 21 and there was no linkage disequilibrium among locus. One locus deviated from Hardy–Weinberg equilibrium and had a high proportion of null alleles. Those loci will be used in addition to previously developed loci to improve the precision of parentage assignment and population genetics studies on this species.</description><identifier>ISSN: 0301-4851</identifier><identifier>EISSN: 1573-4978</identifier><identifier>DOI: 10.1007/s11033-020-05586-1</identifier><identifier>PMID: 32588189</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Alleles ; Animal Anatomy ; Animal Biochemistry ; Animal reproduction ; Animals ; Annealing ; Biomedical and Life Sciences ; Design ; Genetic Loci ; Genetic markers ; Genetic structure ; Genetic testing ; Genetics, Population ; Genomes ; Histology ; Life Sciences ; Linkage Disequilibrium ; Microsatellite Repeats ; Microsatellites ; Molecular biology ; Morphology ; Polymorphism, Genetic ; Population genetics ; Population studies ; Quantitative genetics ; Sciuridae - genetics ; Short Communication ; Tamias striatus</subject><ispartof>Molecular biology reports, 2020-08, Vol.47 (8), p.6393-6397</ispartof><rights>Springer Nature B.V. 2020</rights><rights>Springer Nature B.V. 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-4f054353202bcdc1c2f1812ebfec978190742dcdb64d88ac8d9f05d97085eb1a3</citedby><cites>FETCH-LOGICAL-c375t-4f054353202bcdc1c2f1812ebfec978190742dcdb64d88ac8d9f05d97085eb1a3</cites><orcidid>0000-0002-8091-1044 ; 0000-0001-7002-7573 ; 0000-0002-0419-7125 ; 0000-0001-5983-9773 ; 0000-0002-3393-864X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11033-020-05586-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11033-020-05586-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,781,785,27926,27927,41490,42559,51321</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32588189$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Vandal, Katherine</creatorcontrib><creatorcontrib>Houle, Carolyne</creatorcontrib><creatorcontrib>Archambault, Annie</creatorcontrib><creatorcontrib>Réale, Denis</creatorcontrib><creatorcontrib>Garant, Dany</creatorcontrib><title>Development and characterization of 14 microsatellites for the eastern chipmunk, Tamias striatus</title><title>Molecular biology reports</title><addtitle>Mol Biol Rep</addtitle><addtitle>Mol Biol Rep</addtitle><description>The number of microsatellite markers currently available for the eastern chipmunk
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provides limited capacity to achieve sufficient pedigree building for the study of their genetic structure and relatedness patterns. We developed microsatellite loci for the eastern chipmunk, a small rodent commonly found in eastern North America. More specifically, we report data for 14 loci and 50 individuals genotyped from a population in southern Québec, Canada. We found a number of alleles ranging from 5 to 21 and there was no linkage disequilibrium among locus. One locus deviated from Hardy–Weinberg equilibrium and had a high proportion of null alleles. 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Tamias striatus
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| ispartof | Molecular biology reports, 2020-08, Vol.47 (8), p.6393-6397 |
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| subjects | Alleles Animal Anatomy Animal Biochemistry Animal reproduction Animals Annealing Biomedical and Life Sciences Design Genetic Loci Genetic markers Genetic structure Genetic testing Genetics, Population Genomes Histology Life Sciences Linkage Disequilibrium Microsatellite Repeats Microsatellites Molecular biology Morphology Polymorphism, Genetic Population genetics Population studies Quantitative genetics Sciuridae - genetics Short Communication Tamias striatus |
| title | Development and characterization of 14 microsatellites for the eastern chipmunk, Tamias striatus |
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