Investigation of promoter methylation of MCPH1 gene in circulating cell-free DNA of brain tumor patients

Introduction Despite advanced diagnostic and therapeutic techniques, many brain tumors are still diagnosed at high grades and, therefore finding novel molecular markers may assist in early detection and reducing brain tumors-related mortality rate. Owing to the previous reports on the importance of...

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Veröffentlicht in:Experimental brain research 2020-09, Vol.238 (9), p.1903-1909
Hauptverfasser: Ghodsi, Marjan, Shahmohammadi, Mohammadreza, Modarressi, Mohammad Hossein, Karami, Fatemeh
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container_issue 9
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container_title Experimental brain research
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creator Ghodsi, Marjan
Shahmohammadi, Mohammadreza
Modarressi, Mohammad Hossein
Karami, Fatemeh
description Introduction Despite advanced diagnostic and therapeutic techniques, many brain tumors are still diagnosed at high grades and, therefore finding novel molecular markers may assist in early detection and reducing brain tumors-related mortality rate. Owing to the previous reports on the importance of MCPH1 gene in tumorigenesis, the present study was aimed to study the promoter methylation of MCPH1 gene in paired circulating cell-free DNA (cfDNA) and tumor tissues of brain tumor patients. Materials and methods Fourteen fresh paired serum and tumor tissue samples in addition to 18 isolated serum samples were collected from patients affected by different grades of brain tumor. Genomic DNA and cfDNA was isolated from tissue and serum samples using QIAamp DNA Mini Kit Norgen Bioteck Kit, respectively. Methylation DNA immunoprecipitation Real-time polymerization chain reaction (MeDIP-Real-time PCR) was performed on isolated DNA samples using EpiQuik MeDIP Ultra Kit and specific primer pairs. cfDNA quantity was determined through Real-time PCR analysis using specific primer pairs designed for GAPDH gene. Results MCPH1 was methylated in 54% of cfDNA samples which was significantly associated with tumor grade, as well ( P -value = 0.02). The methylation rate of MCPH1 was found as 78% in the tissue samples which was meaningfully associated with tumor grade ( P -value = 0.03). Moreover, methylation of the MCPH1 gene was consistent in 57% of the same cfDNA and tissue samples. Methylation of MCPH1 gene in neither tumor tissues nor cfDNA was not correlated with age and sex of the patients. Discussion and conclusion Due to the conformity of methylation of MCPH1 gene in cfDNA and tissue samples in more than half of the enrolled patients, especially in higher grades of tumors, it seems that MCPH1 promoter methylation could be a potential epimarker in not only detection of brain tumors but also in response to chemo- and radiotherapy which warranted further assessment.
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Owing to the previous reports on the importance of MCPH1 gene in tumorigenesis, the present study was aimed to study the promoter methylation of MCPH1 gene in paired circulating cell-free DNA (cfDNA) and tumor tissues of brain tumor patients. Materials and methods Fourteen fresh paired serum and tumor tissue samples in addition to 18 isolated serum samples were collected from patients affected by different grades of brain tumor. Genomic DNA and cfDNA was isolated from tissue and serum samples using QIAamp DNA Mini Kit Norgen Bioteck Kit, respectively. Methylation DNA immunoprecipitation Real-time polymerization chain reaction (MeDIP-Real-time PCR) was performed on isolated DNA samples using EpiQuik MeDIP Ultra Kit and specific primer pairs. cfDNA quantity was determined through Real-time PCR analysis using specific primer pairs designed for GAPDH gene. Results MCPH1 was methylated in 54% of cfDNA samples which was significantly associated with tumor grade, as well ( P -value = 0.02). The methylation rate of MCPH1 was found as 78% in the tissue samples which was meaningfully associated with tumor grade ( P -value = 0.03). Moreover, methylation of the MCPH1 gene was consistent in 57% of the same cfDNA and tissue samples. Methylation of MCPH1 gene in neither tumor tissues nor cfDNA was not correlated with age and sex of the patients. Discussion and conclusion Due to the conformity of methylation of MCPH1 gene in cfDNA and tissue samples in more than half of the enrolled patients, especially in higher grades of tumors, it seems that MCPH1 promoter methylation could be a potential epimarker in not only detection of brain tumors but also in response to chemo- and radiotherapy which warranted further assessment.</description><identifier>ISSN: 0014-4819</identifier><identifier>EISSN: 1432-1106</identifier><identifier>DOI: 10.1007/s00221-020-05848-1</identifier><identifier>PMID: 32556427</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Analysis ; Biomarkers, Tumor ; Biomedical and Life Sciences ; Biomedicine ; Brain cancer ; Brain Neoplasms - genetics ; Brain tumors ; Cell Cycle Proteins ; Cell-Free Nucleic Acids - genetics ; Cytoskeletal Proteins - genetics ; Deoxyribonucleic acid ; DNA ; DNA Methylation ; DNA, Neoplasm ; Ethylenediaminetetraacetic acid ; Genes ; Genetic research ; Genomics ; Glyceraldehyde-3-phosphate dehydrogenase ; Health aspects ; Humans ; Immunoprecipitation ; Iran ; Methylation ; Mortality ; Neurology ; Neurosciences ; Polymerase chain reaction ; Polymerization ; Promoter Regions, Genetic ; Radiation therapy ; Research Article ; Tumorigenesis ; Tumors</subject><ispartof>Experimental brain research, 2020-09, Vol.238 (9), p.1903-1909</ispartof><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2020</rights><rights>COPYRIGHT 2020 Springer</rights><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c507t-bc7933dd2c1b723c28cdbfb8012ad71317130ab1ef8cc79a03b5f01ae473db2b3</citedby><cites>FETCH-LOGICAL-c507t-bc7933dd2c1b723c28cdbfb8012ad71317130ab1ef8cc79a03b5f01ae473db2b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00221-020-05848-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00221-020-05848-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32556427$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ghodsi, Marjan</creatorcontrib><creatorcontrib>Shahmohammadi, Mohammadreza</creatorcontrib><creatorcontrib>Modarressi, Mohammad Hossein</creatorcontrib><creatorcontrib>Karami, Fatemeh</creatorcontrib><title>Investigation of promoter methylation of MCPH1 gene in circulating cell-free DNA of brain tumor patients</title><title>Experimental brain research</title><addtitle>Exp Brain Res</addtitle><addtitle>Exp Brain Res</addtitle><description>Introduction Despite advanced diagnostic and therapeutic techniques, many brain tumors are still diagnosed at high grades and, therefore finding novel molecular markers may assist in early detection and reducing brain tumors-related mortality rate. Owing to the previous reports on the importance of MCPH1 gene in tumorigenesis, the present study was aimed to study the promoter methylation of MCPH1 gene in paired circulating cell-free DNA (cfDNA) and tumor tissues of brain tumor patients. Materials and methods Fourteen fresh paired serum and tumor tissue samples in addition to 18 isolated serum samples were collected from patients affected by different grades of brain tumor. Genomic DNA and cfDNA was isolated from tissue and serum samples using QIAamp DNA Mini Kit Norgen Bioteck Kit, respectively. Methylation DNA immunoprecipitation Real-time polymerization chain reaction (MeDIP-Real-time PCR) was performed on isolated DNA samples using EpiQuik MeDIP Ultra Kit and specific primer pairs. cfDNA quantity was determined through Real-time PCR analysis using specific primer pairs designed for GAPDH gene. Results MCPH1 was methylated in 54% of cfDNA samples which was significantly associated with tumor grade, as well ( P -value = 0.02). The methylation rate of MCPH1 was found as 78% in the tissue samples which was meaningfully associated with tumor grade ( P -value = 0.03). Moreover, methylation of the MCPH1 gene was consistent in 57% of the same cfDNA and tissue samples. Methylation of MCPH1 gene in neither tumor tissues nor cfDNA was not correlated with age and sex of the patients. Discussion and conclusion Due to the conformity of methylation of MCPH1 gene in cfDNA and tissue samples in more than half of the enrolled patients, especially in higher grades of tumors, it seems that MCPH1 promoter methylation could be a potential epimarker in not only detection of brain tumors but also in response to chemo- and radiotherapy which warranted further assessment.</description><subject>Analysis</subject><subject>Biomarkers, Tumor</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Brain cancer</subject><subject>Brain Neoplasms - genetics</subject><subject>Brain tumors</subject><subject>Cell Cycle Proteins</subject><subject>Cell-Free Nucleic Acids - genetics</subject><subject>Cytoskeletal Proteins - genetics</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA Methylation</subject><subject>DNA, Neoplasm</subject><subject>Ethylenediaminetetraacetic acid</subject><subject>Genes</subject><subject>Genetic research</subject><subject>Genomics</subject><subject>Glyceraldehyde-3-phosphate dehydrogenase</subject><subject>Health aspects</subject><subject>Humans</subject><subject>Immunoprecipitation</subject><subject>Iran</subject><subject>Methylation</subject><subject>Mortality</subject><subject>Neurology</subject><subject>Neurosciences</subject><subject>Polymerase chain reaction</subject><subject>Polymerization</subject><subject>Promoter Regions, Genetic</subject><subject>Radiation therapy</subject><subject>Research Article</subject><subject>Tumorigenesis</subject><subject>Tumors</subject><issn>0014-4819</issn><issn>1432-1106</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kttu1DAQhi0EoqXwAlygSEgILlJm7GSTvVwth65UDuJwbdnOJJsqsbe2g-jb43RLyyKELMvy-PtHM-OfsacIpwhQvQ4AnGMOHHIo66LO8R47xkLwHBEW99kxABZ5UePyiD0K4WK-igoesiPBy3JR8OqYbTf2B4XYdyr2zmauzXbejS6Sz0aK26vhNv5h_fkMs44sZb3NTO_NND_aLjM0DHnribI3H1czqr1KSJxG57NdYsjG8Jg9aNUQ6MnNecK-v3v7bX2Wn396v1mvznNTQhVzbaqlEE3DDeqKC8Nr0-hW14BcNRUKTBuURmprk1AFQpctoKKiEo3mWpywl_u8qY_LKbUmxz7MFSpLbgqSF1jyJRYLSOjzv9ALN3mbqkuUKIUQRV3dUZ0aSPa2ddErMyeVq4UQaabLa-r0H1RaDY29cZbaPsUPBK8OBImJ9DN2agpBbr5-OWRf_MFuSQ1xG9wwzV8TDkG-B413IXhq5c73o_JXEkHOnpF7z8jkGXntGYlJ9OxmDJMeqbmV_DZJAsQeCOnJduTv5vSftL8Aw_rIfg</recordid><startdate>20200901</startdate><enddate>20200901</enddate><creator>Ghodsi, Marjan</creator><creator>Shahmohammadi, Mohammadreza</creator><creator>Modarressi, Mohammad Hossein</creator><creator>Karami, Fatemeh</creator><general>Springer Berlin Heidelberg</general><general>Springer</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>0-V</scope><scope>3V.</scope><scope>7QP</scope><scope>7QR</scope><scope>7RV</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>88G</scope><scope>88J</scope><scope>8AO</scope><scope>8FD</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ALSLI</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>K9.</scope><scope>KB0</scope><scope>M0S</scope><scope>M1P</scope><scope>M2M</scope><scope>M2R</scope><scope>NAPCQ</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PSYQQ</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20200901</creationdate><title>Investigation of promoter methylation of MCPH1 gene in circulating cell-free DNA of brain tumor patients</title><author>Ghodsi, Marjan ; 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Owing to the previous reports on the importance of MCPH1 gene in tumorigenesis, the present study was aimed to study the promoter methylation of MCPH1 gene in paired circulating cell-free DNA (cfDNA) and tumor tissues of brain tumor patients. Materials and methods Fourteen fresh paired serum and tumor tissue samples in addition to 18 isolated serum samples were collected from patients affected by different grades of brain tumor. Genomic DNA and cfDNA was isolated from tissue and serum samples using QIAamp DNA Mini Kit Norgen Bioteck Kit, respectively. Methylation DNA immunoprecipitation Real-time polymerization chain reaction (MeDIP-Real-time PCR) was performed on isolated DNA samples using EpiQuik MeDIP Ultra Kit and specific primer pairs. cfDNA quantity was determined through Real-time PCR analysis using specific primer pairs designed for GAPDH gene. Results MCPH1 was methylated in 54% of cfDNA samples which was significantly associated with tumor grade, as well ( P -value = 0.02). The methylation rate of MCPH1 was found as 78% in the tissue samples which was meaningfully associated with tumor grade ( P -value = 0.03). Moreover, methylation of the MCPH1 gene was consistent in 57% of the same cfDNA and tissue samples. Methylation of MCPH1 gene in neither tumor tissues nor cfDNA was not correlated with age and sex of the patients. Discussion and conclusion Due to the conformity of methylation of MCPH1 gene in cfDNA and tissue samples in more than half of the enrolled patients, especially in higher grades of tumors, it seems that MCPH1 promoter methylation could be a potential epimarker in not only detection of brain tumors but also in response to chemo- and radiotherapy which warranted further assessment.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>32556427</pmid><doi>10.1007/s00221-020-05848-1</doi><tpages>7</tpages></addata></record>
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subjects Analysis
Biomarkers, Tumor
Biomedical and Life Sciences
Biomedicine
Brain cancer
Brain Neoplasms - genetics
Brain tumors
Cell Cycle Proteins
Cell-Free Nucleic Acids - genetics
Cytoskeletal Proteins - genetics
Deoxyribonucleic acid
DNA
DNA Methylation
DNA, Neoplasm
Ethylenediaminetetraacetic acid
Genes
Genetic research
Genomics
Glyceraldehyde-3-phosphate dehydrogenase
Health aspects
Humans
Immunoprecipitation
Iran
Methylation
Mortality
Neurology
Neurosciences
Polymerase chain reaction
Polymerization
Promoter Regions, Genetic
Radiation therapy
Research Article
Tumorigenesis
Tumors
title Investigation of promoter methylation of MCPH1 gene in circulating cell-free DNA of brain tumor patients
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