Empirical orthogonal function regression: Linking population biology to spatial varying environmental conditions using climate projections
Ecologists and oceanographers inform population and ecosystem management by identifying the physical drivers of ecological dynamics. However, different research communities use different analytical tools where, for example, physical oceanographers often apply rank‐reduction techniques (a.k.a. empiri...
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description | Ecologists and oceanographers inform population and ecosystem management by identifying the physical drivers of ecological dynamics. However, different research communities use different analytical tools where, for example, physical oceanographers often apply rank‐reduction techniques (a.k.a. empirical orthogonal functions [EOF]) to identify indicators that represent dominant modes of physical variability, whereas population ecologists use dynamical models that incorporate physical indicators as covariates. Simultaneously modeling physical and biological processes would have several benefits, including improved communication across sub‐fields; more efficient use of limited data; and the ability to compare importance of physical and biological drivers for population dynamics. Here, we develop a new statistical technique, EOF regression, which jointly models population‐scale dynamics and spatially distributed physical dynamics. EOF regression is fitted using maximum‐likelihood techniques and applies a generalized EOF analysis to environmental measurements, estimates one or more time series representing modes of environmental variability, and simultaneously estimates the association of this time series with biological measurements. By doing so, it identifies a spatial map of environmental conditions that are best correlated with annual variability in the biological process. We demonstrate this method using a linear (Ricker) model for early‐life survival (“recruitment”) of three groundfish species in the eastern Bering Sea from 1982 to 2016, combined with measurements and end‐of‐century projections for bottom and sea surface temperature. Results suggest that (a) we can forecast biological dynamics while applying delta‐correction and statistical downscaling to calibrate measurements and projected physical variables, (b) physical drivers are statistically significant for Pacific cod and walleye pollock recruitment, (c) separately analyzing physical and biological variables fails to identify the significant association for walleye pollock, and (d) cod and pollock will likely have reduced recruitment given forecasted temperatures over future decades.
We develop a new statistical technique that simultaneously fits to observed and projected environmental conditions as well as vital rates for fish and wildlife populations. The method identifies typical patterns of environmental variability, as well as environmental conditions that are associated with higher‐than‐aver |
doi_str_mv | 10.1111/gcb.15149 |
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We develop a new statistical technique that simultaneously fits to observed and projected environmental conditions as well as vital rates for fish and wildlife populations. The method identifies typical patterns of environmental variability, as well as environmental conditions that are associated with higher‐than‐average vital rates. We then demonstrate the method using projected climate change in the northern Pacific Ocean. This shows a significant association between climate and juvenile survival for two commercially important fishes, as well as declining survival given projected climate conditions by 2090.</description><identifier>ISSN: 1354-1013</identifier><identifier>EISSN: 1365-2486</identifier><identifier>DOI: 10.1111/gcb.15149</identifier><identifier>PMID: 32463171</identifier><language>eng</language><publisher>England: Blackwell Publishing Ltd</publisher><subject>Annual variations ; Biological activity ; Biology ; Communication ; delta‐correction method ; Dynamic models ; Dynamics ; Ecologists ; Ecosystem management ; Empirical analysis ; empirical orthogonal function (EOF) ; end‐of‐century projection ; Environmental conditions ; Freshwater fishes ; Gadus chalcogrammus ; Gadus macrocephalus ; Indicators ; Marine ecosystems ; Marine fishes ; Oceanographers ; Orthogonal functions ; Physical oceanography ; Pollack ; Population ; Population (statistical) ; Population biology ; Population dynamics ; Recruitment ; Recruitment (fisheries) ; Regional Ocean Modeling System (ROMS) ; Regression analysis ; Ricker model ; Sea surface ; Sea surface temperature ; Statistical analysis ; stock–recruit analysis ; Surface temperature ; Survival ; Time series ; Weather forecasting</subject><ispartof>Global change biology, 2020-08, Vol.26 (8), p.4638-4649</ispartof><rights>2020 John Wiley & Sons Ltd</rights><rights>2020 John Wiley & Sons Ltd.</rights><rights>Copyright © 2020 John Wiley & Sons Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3539-b7cce630984b7e05de58baeb64775e77ad04b77d6b8a74b2875061de4977a11f3</citedby><cites>FETCH-LOGICAL-c3539-b7cce630984b7e05de58baeb64775e77ad04b77d6b8a74b2875061de4977a11f3</cites><orcidid>0000-0002-5892-2177 ; 0000-0002-3240-6705 ; 0000-0002-7170-8677 ; 0000-0002-1737-9294 ; 0000-0001-7415-1010 ; 0000-0002-0253-7464 ; 0000-0003-1611-4881</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fgcb.15149$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fgcb.15149$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32463171$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Thorson, James T.</creatorcontrib><creatorcontrib>Cheng, Wei</creatorcontrib><creatorcontrib>Hermann, Albert J.</creatorcontrib><creatorcontrib>Ianelli, James N.</creatorcontrib><creatorcontrib>Litzow, Michael A.</creatorcontrib><creatorcontrib>O'Leary, Cecilia A.</creatorcontrib><creatorcontrib>Thompson, Grant G.</creatorcontrib><title>Empirical orthogonal function regression: Linking population biology to spatial varying environmental conditions using climate projections</title><title>Global change biology</title><addtitle>Glob Chang Biol</addtitle><description>Ecologists and oceanographers inform population and ecosystem management by identifying the physical drivers of ecological dynamics. However, different research communities use different analytical tools where, for example, physical oceanographers often apply rank‐reduction techniques (a.k.a. empirical orthogonal functions [EOF]) to identify indicators that represent dominant modes of physical variability, whereas population ecologists use dynamical models that incorporate physical indicators as covariates. Simultaneously modeling physical and biological processes would have several benefits, including improved communication across sub‐fields; more efficient use of limited data; and the ability to compare importance of physical and biological drivers for population dynamics. Here, we develop a new statistical technique, EOF regression, which jointly models population‐scale dynamics and spatially distributed physical dynamics. EOF regression is fitted using maximum‐likelihood techniques and applies a generalized EOF analysis to environmental measurements, estimates one or more time series representing modes of environmental variability, and simultaneously estimates the association of this time series with biological measurements. By doing so, it identifies a spatial map of environmental conditions that are best correlated with annual variability in the biological process. We demonstrate this method using a linear (Ricker) model for early‐life survival (“recruitment”) of three groundfish species in the eastern Bering Sea from 1982 to 2016, combined with measurements and end‐of‐century projections for bottom and sea surface temperature. Results suggest that (a) we can forecast biological dynamics while applying delta‐correction and statistical downscaling to calibrate measurements and projected physical variables, (b) physical drivers are statistically significant for Pacific cod and walleye pollock recruitment, (c) separately analyzing physical and biological variables fails to identify the significant association for walleye pollock, and (d) cod and pollock will likely have reduced recruitment given forecasted temperatures over future decades.
We develop a new statistical technique that simultaneously fits to observed and projected environmental conditions as well as vital rates for fish and wildlife populations. The method identifies typical patterns of environmental variability, as well as environmental conditions that are associated with higher‐than‐average vital rates. We then demonstrate the method using projected climate change in the northern Pacific Ocean. This shows a significant association between climate and juvenile survival for two commercially important fishes, as well as declining survival given projected climate conditions by 2090.</description><subject>Annual variations</subject><subject>Biological activity</subject><subject>Biology</subject><subject>Communication</subject><subject>delta‐correction method</subject><subject>Dynamic models</subject><subject>Dynamics</subject><subject>Ecologists</subject><subject>Ecosystem management</subject><subject>Empirical analysis</subject><subject>empirical orthogonal function (EOF)</subject><subject>end‐of‐century projection</subject><subject>Environmental conditions</subject><subject>Freshwater fishes</subject><subject>Gadus chalcogrammus</subject><subject>Gadus macrocephalus</subject><subject>Indicators</subject><subject>Marine ecosystems</subject><subject>Marine fishes</subject><subject>Oceanographers</subject><subject>Orthogonal functions</subject><subject>Physical oceanography</subject><subject>Pollack</subject><subject>Population</subject><subject>Population (statistical)</subject><subject>Population biology</subject><subject>Population dynamics</subject><subject>Recruitment</subject><subject>Recruitment (fisheries)</subject><subject>Regional Ocean Modeling System (ROMS)</subject><subject>Regression analysis</subject><subject>Ricker model</subject><subject>Sea surface</subject><subject>Sea surface temperature</subject><subject>Statistical analysis</subject><subject>stock–recruit analysis</subject><subject>Surface temperature</subject><subject>Survival</subject><subject>Time series</subject><subject>Weather forecasting</subject><issn>1354-1013</issn><issn>1365-2486</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp1kbFu2zAQhomiQe06GfoCgYAu6SCbFElRzpYYrlPAQJZ2FkjqrNKRSIWUEvgV8tSl7CRDgHK5w_0f_wP5I_SN4DmJZ1FrNSecsOUnNCU052nGivzz2HOWEkzoBH0NYY8xphnOv6AJzVhOiSBT9LJuO-ONlk3ifP_X1c7GdjdY3RtnEw-1hxBie51sjX0wtk461w2NPMrKuMbVh6R3SejiKF59kv4wUmCfjHe2BdvHqXa2MuOVkAxhlHVjWtlD0nm3h-OucI7OdrIJcPFaZ-jPz_Xv1V26vd_8Wt1sU005XaZKaA05xcuCKQGYV8ALJUHlTAgOQsgKR0FUuSqkYCorBMc5qYAto0bIjs7Q1ck37n4cIPRla4KGppEW3BDKjGHBC0IEjej3D-jeDT7-0EhlFFM2lhn6caK0dyF42JWdj6_zh5LgcgyojAGVx4Aie_nqOKgWqnfyLZEILE7As2ng8H-ncrO6PVn-A0ALnS4</recordid><startdate>202008</startdate><enddate>202008</enddate><creator>Thorson, James T.</creator><creator>Cheng, Wei</creator><creator>Hermann, Albert J.</creator><creator>Ianelli, James N.</creator><creator>Litzow, Michael A.</creator><creator>O'Leary, Cecilia A.</creator><creator>Thompson, Grant G.</creator><general>Blackwell Publishing Ltd</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7UA</scope><scope>C1K</scope><scope>F1W</scope><scope>H97</scope><scope>L.G</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-5892-2177</orcidid><orcidid>https://orcid.org/0000-0002-3240-6705</orcidid><orcidid>https://orcid.org/0000-0002-7170-8677</orcidid><orcidid>https://orcid.org/0000-0002-1737-9294</orcidid><orcidid>https://orcid.org/0000-0001-7415-1010</orcidid><orcidid>https://orcid.org/0000-0002-0253-7464</orcidid><orcidid>https://orcid.org/0000-0003-1611-4881</orcidid></search><sort><creationdate>202008</creationdate><title>Empirical orthogonal function regression: Linking population biology to spatial varying environmental conditions using climate projections</title><author>Thorson, James T. ; Cheng, Wei ; Hermann, Albert J. ; Ianelli, James N. ; Litzow, Michael A. ; O'Leary, Cecilia A. ; Thompson, Grant G.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3539-b7cce630984b7e05de58baeb64775e77ad04b77d6b8a74b2875061de4977a11f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Annual variations</topic><topic>Biological activity</topic><topic>Biology</topic><topic>Communication</topic><topic>delta‐correction method</topic><topic>Dynamic models</topic><topic>Dynamics</topic><topic>Ecologists</topic><topic>Ecosystem management</topic><topic>Empirical analysis</topic><topic>empirical orthogonal function (EOF)</topic><topic>end‐of‐century projection</topic><topic>Environmental conditions</topic><topic>Freshwater fishes</topic><topic>Gadus chalcogrammus</topic><topic>Gadus macrocephalus</topic><topic>Indicators</topic><topic>Marine ecosystems</topic><topic>Marine fishes</topic><topic>Oceanographers</topic><topic>Orthogonal functions</topic><topic>Physical oceanography</topic><topic>Pollack</topic><topic>Population</topic><topic>Population (statistical)</topic><topic>Population biology</topic><topic>Population dynamics</topic><topic>Recruitment</topic><topic>Recruitment (fisheries)</topic><topic>Regional Ocean Modeling System (ROMS)</topic><topic>Regression analysis</topic><topic>Ricker model</topic><topic>Sea surface</topic><topic>Sea surface temperature</topic><topic>Statistical analysis</topic><topic>stock–recruit analysis</topic><topic>Surface temperature</topic><topic>Survival</topic><topic>Time series</topic><topic>Weather forecasting</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Thorson, James T.</creatorcontrib><creatorcontrib>Cheng, Wei</creatorcontrib><creatorcontrib>Hermann, Albert J.</creatorcontrib><creatorcontrib>Ianelli, James N.</creatorcontrib><creatorcontrib>Litzow, Michael A.</creatorcontrib><creatorcontrib>O'Leary, Cecilia A.</creatorcontrib><creatorcontrib>Thompson, Grant G.</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Water Resources Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>MEDLINE - Academic</collection><jtitle>Global change biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Thorson, James T.</au><au>Cheng, Wei</au><au>Hermann, Albert J.</au><au>Ianelli, James N.</au><au>Litzow, Michael A.</au><au>O'Leary, Cecilia A.</au><au>Thompson, Grant G.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Empirical orthogonal function regression: Linking population biology to spatial varying environmental conditions using climate projections</atitle><jtitle>Global change biology</jtitle><addtitle>Glob Chang Biol</addtitle><date>2020-08</date><risdate>2020</risdate><volume>26</volume><issue>8</issue><spage>4638</spage><epage>4649</epage><pages>4638-4649</pages><issn>1354-1013</issn><eissn>1365-2486</eissn><abstract>Ecologists and oceanographers inform population and ecosystem management by identifying the physical drivers of ecological dynamics. However, different research communities use different analytical tools where, for example, physical oceanographers often apply rank‐reduction techniques (a.k.a. empirical orthogonal functions [EOF]) to identify indicators that represent dominant modes of physical variability, whereas population ecologists use dynamical models that incorporate physical indicators as covariates. Simultaneously modeling physical and biological processes would have several benefits, including improved communication across sub‐fields; more efficient use of limited data; and the ability to compare importance of physical and biological drivers for population dynamics. Here, we develop a new statistical technique, EOF regression, which jointly models population‐scale dynamics and spatially distributed physical dynamics. EOF regression is fitted using maximum‐likelihood techniques and applies a generalized EOF analysis to environmental measurements, estimates one or more time series representing modes of environmental variability, and simultaneously estimates the association of this time series with biological measurements. By doing so, it identifies a spatial map of environmental conditions that are best correlated with annual variability in the biological process. We demonstrate this method using a linear (Ricker) model for early‐life survival (“recruitment”) of three groundfish species in the eastern Bering Sea from 1982 to 2016, combined with measurements and end‐of‐century projections for bottom and sea surface temperature. Results suggest that (a) we can forecast biological dynamics while applying delta‐correction and statistical downscaling to calibrate measurements and projected physical variables, (b) physical drivers are statistically significant for Pacific cod and walleye pollock recruitment, (c) separately analyzing physical and biological variables fails to identify the significant association for walleye pollock, and (d) cod and pollock will likely have reduced recruitment given forecasted temperatures over future decades.
We develop a new statistical technique that simultaneously fits to observed and projected environmental conditions as well as vital rates for fish and wildlife populations. The method identifies typical patterns of environmental variability, as well as environmental conditions that are associated with higher‐than‐average vital rates. We then demonstrate the method using projected climate change in the northern Pacific Ocean. This shows a significant association between climate and juvenile survival for two commercially important fishes, as well as declining survival given projected climate conditions by 2090.</abstract><cop>England</cop><pub>Blackwell Publishing Ltd</pub><pmid>32463171</pmid><doi>10.1111/gcb.15149</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-5892-2177</orcidid><orcidid>https://orcid.org/0000-0002-3240-6705</orcidid><orcidid>https://orcid.org/0000-0002-7170-8677</orcidid><orcidid>https://orcid.org/0000-0002-1737-9294</orcidid><orcidid>https://orcid.org/0000-0001-7415-1010</orcidid><orcidid>https://orcid.org/0000-0002-0253-7464</orcidid><orcidid>https://orcid.org/0000-0003-1611-4881</orcidid></addata></record> |
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subjects | Annual variations Biological activity Biology Communication delta‐correction method Dynamic models Dynamics Ecologists Ecosystem management Empirical analysis empirical orthogonal function (EOF) end‐of‐century projection Environmental conditions Freshwater fishes Gadus chalcogrammus Gadus macrocephalus Indicators Marine ecosystems Marine fishes Oceanographers Orthogonal functions Physical oceanography Pollack Population Population (statistical) Population biology Population dynamics Recruitment Recruitment (fisheries) Regional Ocean Modeling System (ROMS) Regression analysis Ricker model Sea surface Sea surface temperature Statistical analysis stock–recruit analysis Surface temperature Survival Time series Weather forecasting |
title | Empirical orthogonal function regression: Linking population biology to spatial varying environmental conditions using climate projections |
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