Identifying Invaders: The Case of Ceratium furcoides (Gonyaulacales, Dinophyceae) in South America
Ceratium furcoides is an invasive freshwater dinoflagellate that in the last three decades has expanded its geographic distribution in South America, being recently found in Paraná River floodplain (Argentina). Despite growing concern about the presence and impacts of this invader, information regar...
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| Veröffentlicht in: | Journal of phycology 2020-10, Vol.56 (5), p.1362-1366 |
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| creator | Accattatis, Victoria Piccini, Claudia Huber, Paula Metz, Sebastian Rueda, Eva Devercelli, Melina Lin, S. |
| description | Ceratium furcoides is an invasive freshwater dinoflagellate that in the last three decades has expanded its geographic distribution in South America, being recently found in Paraná River floodplain (Argentina). Despite growing concern about the presence and impacts of this invader, information regarding genetic diversity in the Southern Hemisphere is missing. This work constitutes the first phylogenetic characterization of Ceratium populations of South America, particularly, from the Paraná system. After taxonomic identification as C. furcoides based on morphological traits, two sequencing‐based approaches were applied using the ribosomal 18S gene: Sanger sequencing to isolated individuals and high‐throughput amplicon sequencing (HTS) to environmental DNA. The sequence of C. furcoides obtained shared 100% identity to Asian sequences, and formed a highly supported clade in the constructed reference phylogenetic tree. HTS helped to recover low‐frequency genetic variants suggesting the presence of different population of C. furcoides, and to alert potential invasion in its early stages. |
| doi_str_mv | 10.1111/jpy.13015 |
| format | Article |
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Despite growing concern about the presence and impacts of this invader, information regarding genetic diversity in the Southern Hemisphere is missing. This work constitutes the first phylogenetic characterization of Ceratium populations of South America, particularly, from the Paraná system. After taxonomic identification as C. furcoides based on morphological traits, two sequencing‐based approaches were applied using the ribosomal 18S gene: Sanger sequencing to isolated individuals and high‐throughput amplicon sequencing (HTS) to environmental DNA. The sequence of C. furcoides obtained shared 100% identity to Asian sequences, and formed a highly supported clade in the constructed reference phylogenetic tree. HTS helped to recover low‐frequency genetic variants suggesting the presence of different population of C. furcoides, and to alert potential invasion in its early stages.</description><identifier>ISSN: 0022-3646</identifier><identifier>EISSN: 1529-8817</identifier><identifier>DOI: 10.1111/jpy.13015</identifier><identifier>PMID: 32399960</identifier><language>eng</language><publisher>United States: Wiley Subscription Services, Inc</publisher><subject>18S rRNA gene ; Argentina ; biological invasion ; Ceratium furcoides ; Deoxyribonucleic acid ; dinoflagellate ; Dinoflagellates ; Dinoflagellida - genetics ; DNA ; DNA sequencing ; Environmental DNA ; Floodplains ; Fresh Water ; Freshwater ; Genetic diversity ; Genetic variance ; Genetic variation ; Geographical distribution ; Inland water environment ; Introduced species ; Nucleotide sequence ; Phylogenetics ; Phylogeny ; Sequence Analysis, DNA ; Sequencing ; South America ; Southern Hemisphere</subject><ispartof>Journal of phycology, 2020-10, Vol.56 (5), p.1362-1366</ispartof><rights>2020 Phycological Society of America</rights><rights>2020 Phycological Society of America.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3035-de9ae07920f38484f67deabc4204ee77dea76e1219f10034cb91e164de629e103</citedby><cites>FETCH-LOGICAL-c3035-de9ae07920f38484f67deabc4204ee77dea76e1219f10034cb91e164de629e103</cites><orcidid>0000-0002-6342-2038</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fjpy.13015$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fjpy.13015$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27903,27904,45553,45554</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32399960$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Lin, S.</contributor><creatorcontrib>Accattatis, Victoria</creatorcontrib><creatorcontrib>Piccini, Claudia</creatorcontrib><creatorcontrib>Huber, Paula</creatorcontrib><creatorcontrib>Metz, Sebastian</creatorcontrib><creatorcontrib>Rueda, Eva</creatorcontrib><creatorcontrib>Devercelli, Melina</creatorcontrib><creatorcontrib>Lin, S.</creatorcontrib><title>Identifying Invaders: The Case of Ceratium furcoides (Gonyaulacales, Dinophyceae) in South America</title><title>Journal of phycology</title><addtitle>J Phycol</addtitle><description>Ceratium furcoides is an invasive freshwater dinoflagellate that in the last three decades has expanded its geographic distribution in South America, being recently found in Paraná River floodplain (Argentina). Despite growing concern about the presence and impacts of this invader, information regarding genetic diversity in the Southern Hemisphere is missing. This work constitutes the first phylogenetic characterization of Ceratium populations of South America, particularly, from the Paraná system. After taxonomic identification as C. furcoides based on morphological traits, two sequencing‐based approaches were applied using the ribosomal 18S gene: Sanger sequencing to isolated individuals and high‐throughput amplicon sequencing (HTS) to environmental DNA. The sequence of C. furcoides obtained shared 100% identity to Asian sequences, and formed a highly supported clade in the constructed reference phylogenetic tree. HTS helped to recover low‐frequency genetic variants suggesting the presence of different population of C. furcoides, and to alert potential invasion in its early stages.</description><subject>18S rRNA gene</subject><subject>Argentina</subject><subject>biological invasion</subject><subject>Ceratium furcoides</subject><subject>Deoxyribonucleic acid</subject><subject>dinoflagellate</subject><subject>Dinoflagellates</subject><subject>Dinoflagellida - genetics</subject><subject>DNA</subject><subject>DNA sequencing</subject><subject>Environmental DNA</subject><subject>Floodplains</subject><subject>Fresh Water</subject><subject>Freshwater</subject><subject>Genetic diversity</subject><subject>Genetic variance</subject><subject>Genetic variation</subject><subject>Geographical distribution</subject><subject>Inland water environment</subject><subject>Introduced species</subject><subject>Nucleotide sequence</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Sequence Analysis, DNA</subject><subject>Sequencing</subject><subject>South America</subject><subject>Southern Hemisphere</subject><issn>0022-3646</issn><issn>1529-8817</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp10E1r20AQBuClJMRumkP_QFjIJYHKmdldSd7egpsPh0AKdQ89ifVqFK-RtO6u1aJ_H6V2eghkLsPAw8vwMvYZYYLDXK43_QQlYPqBjTEVOplOMT9gYwAhEpmpbMQ-xrgGgDxL8YiNpJBa6wzGbDkvqd26qnftE5-3f0xJIX7lixXxmYnEfcVnFMzWdQ2vumC9Kyny81vf9qarjTU1xS_8m2v9ZtVbMnTBXct_-G674lcNBWfNJ3ZYmTrSyX4fs58314vZXfLweDufXT0kVoJMk5K0Ici1gEpO1VRVWV6SWVolQBHlL0eeEQrUFQJIZZcaCTNVUiY0Ichjdr7L3QT_u6O4LRoXLdW1acl3sRAKhBJSChzo2Ru69l1oh-8GlQoUCrUY1MVO2eBjDFQVm-AaE_oCoXgpvhiKL_4VP9jTfWK3bKj8L1-bHsDlDvx1NfXvJxX333_tIp8BiSqLSg</recordid><startdate>202010</startdate><enddate>202010</enddate><creator>Accattatis, Victoria</creator><creator>Piccini, Claudia</creator><creator>Huber, Paula</creator><creator>Metz, Sebastian</creator><creator>Rueda, Eva</creator><creator>Devercelli, Melina</creator><creator>Lin, S.</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TN</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-6342-2038</orcidid></search><sort><creationdate>202010</creationdate><title>Identifying Invaders: The Case of Ceratium furcoides (Gonyaulacales, Dinophyceae) in South America</title><author>Accattatis, Victoria ; Piccini, Claudia ; Huber, Paula ; Metz, Sebastian ; Rueda, Eva ; Devercelli, Melina ; Lin, S.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3035-de9ae07920f38484f67deabc4204ee77dea76e1219f10034cb91e164de629e103</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>18S rRNA gene</topic><topic>Argentina</topic><topic>biological invasion</topic><topic>Ceratium furcoides</topic><topic>Deoxyribonucleic acid</topic><topic>dinoflagellate</topic><topic>Dinoflagellates</topic><topic>Dinoflagellida - genetics</topic><topic>DNA</topic><topic>DNA sequencing</topic><topic>Environmental DNA</topic><topic>Floodplains</topic><topic>Fresh Water</topic><topic>Freshwater</topic><topic>Genetic diversity</topic><topic>Genetic variance</topic><topic>Genetic variation</topic><topic>Geographical distribution</topic><topic>Inland water environment</topic><topic>Introduced species</topic><topic>Nucleotide sequence</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Sequence Analysis, DNA</topic><topic>Sequencing</topic><topic>South America</topic><topic>Southern Hemisphere</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Accattatis, Victoria</creatorcontrib><creatorcontrib>Piccini, Claudia</creatorcontrib><creatorcontrib>Huber, Paula</creatorcontrib><creatorcontrib>Metz, Sebastian</creatorcontrib><creatorcontrib>Rueda, Eva</creatorcontrib><creatorcontrib>Devercelli, Melina</creatorcontrib><creatorcontrib>Lin, S.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Oceanic Abstracts</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of phycology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Accattatis, Victoria</au><au>Piccini, Claudia</au><au>Huber, Paula</au><au>Metz, Sebastian</au><au>Rueda, Eva</au><au>Devercelli, Melina</au><au>Lin, S.</au><au>Lin, S.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Identifying Invaders: The Case of Ceratium furcoides (Gonyaulacales, Dinophyceae) in South America</atitle><jtitle>Journal of phycology</jtitle><addtitle>J Phycol</addtitle><date>2020-10</date><risdate>2020</risdate><volume>56</volume><issue>5</issue><spage>1362</spage><epage>1366</epage><pages>1362-1366</pages><issn>0022-3646</issn><eissn>1529-8817</eissn><abstract>Ceratium furcoides is an invasive freshwater dinoflagellate that in the last three decades has expanded its geographic distribution in South America, being recently found in Paraná River floodplain (Argentina). Despite growing concern about the presence and impacts of this invader, information regarding genetic diversity in the Southern Hemisphere is missing. This work constitutes the first phylogenetic characterization of Ceratium populations of South America, particularly, from the Paraná system. After taxonomic identification as C. furcoides based on morphological traits, two sequencing‐based approaches were applied using the ribosomal 18S gene: Sanger sequencing to isolated individuals and high‐throughput amplicon sequencing (HTS) to environmental DNA. The sequence of C. furcoides obtained shared 100% identity to Asian sequences, and formed a highly supported clade in the constructed reference phylogenetic tree. 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| subjects | 18S rRNA gene Argentina biological invasion Ceratium furcoides Deoxyribonucleic acid dinoflagellate Dinoflagellates Dinoflagellida - genetics DNA DNA sequencing Environmental DNA Floodplains Fresh Water Freshwater Genetic diversity Genetic variance Genetic variation Geographical distribution Inland water environment Introduced species Nucleotide sequence Phylogenetics Phylogeny Sequence Analysis, DNA Sequencing South America Southern Hemisphere |
| title | Identifying Invaders: The Case of Ceratium furcoides (Gonyaulacales, Dinophyceae) in South America |
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