Introduction of human gammaherpesvirus 8 genotypes A, B, and C into Brazil from multiple geographic regions
•HHV-8 genotypes A, B and C were present in isolates from Brazilian HIV/KS patients.•Genotype C was predominant (45.8 %), followed by genotypes A (29.2 %) and B (25 %).•HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group.•HHV-8/B isolates appear to be from Congo and Democ...
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creator | de Oliveira Lopes, Amanda Spitz, Natália Martinelli, Katrini Guidolini de Paula, Anderson Vicente de Castro Conde Toscano, Ana Luiza Braz-Silva, Paulo Henrique dos Santos Barbosa Netto, Juliana Tozetto-Mendoza, Tania Regina de Paula, Vanessa Salete |
description | •HHV-8 genotypes A, B and C were present in isolates from Brazilian HIV/KS patients.•Genotype C was predominant (45.8 %), followed by genotypes A (29.2 %) and B (25 %).•HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group.•HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo.•HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana.
Variations in the open reading frame (ORF) K1 gene sequence of human gammaherpesvirus 8 (HHV-8) has led to the identification of 6 major genotypic clades (A, B, C, D, E, and F) in specimens isolated from around the world. These clades exhibit clear clustering among individuals in different ethnic groups and from different geographic regions. The human population of Brazil varies greatly in ethnicity because of multiple immigration events from Africa, Europe, Asia, and indigenous communities. However, there is scant information about the HHV-8 genotypes currently circulating in Brazil. Here, we describe HHV-8 genotypic diversity in isolates from Brazilian HIV-infected patients living with Kaposi’s sarcoma (KS) by analysis of the complete ORF-K1 region. We also identified the most likely geographic origins of these different Brazilian genotypes. We extracted HHV-8 DNA (24 positive samples) from individuals with HIV/KS from the states of São Paulo and Rio de Janeiro, amplified the ORF-K1 gene using nested PCR (about 870 base pairs), performed sequencing and phylogenetic analysis, and then calculated the mean genetic distances of Brazilian sequences from sequences in other regions of the world (523 sequences analyzed). Phylogenetic analysis showed that genotypes C, A, and B were present in 45.8 %, 29.2 % and 25 % of the isolates from Brazil, respectively. These isolates grouped into separate clades, rather than a single monophyletic cluster. Mean genetic distance analyses suggested that these genotypes were introduced into the Brazil multiple times from different geographical regions. HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group; HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo; and HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana. These results contribute to a better understanding of the genetic diversity and origins of HHV-8 strains circulating in Brazil, and will provide a foundation for further epidemiological and evolutionary studies of HHV-8. |
doi_str_mv | 10.1016/j.virusres.2019.197828 |
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Variations in the open reading frame (ORF) K1 gene sequence of human gammaherpesvirus 8 (HHV-8) has led to the identification of 6 major genotypic clades (A, B, C, D, E, and F) in specimens isolated from around the world. These clades exhibit clear clustering among individuals in different ethnic groups and from different geographic regions. The human population of Brazil varies greatly in ethnicity because of multiple immigration events from Africa, Europe, Asia, and indigenous communities. However, there is scant information about the HHV-8 genotypes currently circulating in Brazil. Here, we describe HHV-8 genotypic diversity in isolates from Brazilian HIV-infected patients living with Kaposi’s sarcoma (KS) by analysis of the complete ORF-K1 region. We also identified the most likely geographic origins of these different Brazilian genotypes. We extracted HHV-8 DNA (24 positive samples) from individuals with HIV/KS from the states of São Paulo and Rio de Janeiro, amplified the ORF-K1 gene using nested PCR (about 870 base pairs), performed sequencing and phylogenetic analysis, and then calculated the mean genetic distances of Brazilian sequences from sequences in other regions of the world (523 sequences analyzed). Phylogenetic analysis showed that genotypes C, A, and B were present in 45.8 %, 29.2 % and 25 % of the isolates from Brazil, respectively. These isolates grouped into separate clades, rather than a single monophyletic cluster. Mean genetic distance analyses suggested that these genotypes were introduced into the Brazil multiple times from different geographical regions. HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group; HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo; and HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana. These results contribute to a better understanding of the genetic diversity and origins of HHV-8 strains circulating in Brazil, and will provide a foundation for further epidemiological and evolutionary studies of HHV-8.</description><identifier>ISSN: 0168-1702</identifier><identifier>EISSN: 1872-7492</identifier><identifier>DOI: 10.1016/j.virusres.2019.197828</identifier><identifier>PMID: 31794796</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Adult ; Algeria ; Australia ; Brazil ; Brazil - epidemiology ; Communicable Diseases, Imported - epidemiology ; Communicable Diseases, Imported - virology ; Democratic Republic of the Congo ; DNA ; England ; Female ; French Guiana ; genes ; Genetic distance ; Genetic Variation ; Genotype ; Genotypic diversity ; Genotyping ; Geography ; Herpesviridae Infections - epidemiology ; Herpesvirus 8, Human - classification ; Herpesvirus 8, Human - genetics ; HIV infections ; HIV Infections - virology ; Human gammaherpesvirus 8 ; Human immunodeficiency virus ; human population ; Humans ; immigration ; Male ; Middle Aged ; Molecular Epidemiology ; monophyly ; nationalities and ethnic groups ; open reading frames ; patients ; Phylogeny ; polymerase chain reaction ; provenance ; Republic of the Congo ; Retrospective Studies ; Russia ; Saliva - virology ; sarcoma ; Sarcoma, Kaposi - virology ; Sequence Analysis, DNA ; Ukraine ; Young Adult</subject><ispartof>Virus research, 2020-01, Vol.276, p.197828-197828, Article 197828</ispartof><rights>2019 Elsevier B.V.</rights><rights>Copyright © 2019 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c449t-fa3f4f1e68e59774fab80ca53cc8a751f6ae280d3f87b2d8b7e0b21f1d2eca413</citedby><cites>FETCH-LOGICAL-c449t-fa3f4f1e68e59774fab80ca53cc8a751f6ae280d3f87b2d8b7e0b21f1d2eca413</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0168170219306471$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31794796$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>de Oliveira Lopes, Amanda</creatorcontrib><creatorcontrib>Spitz, Natália</creatorcontrib><creatorcontrib>Martinelli, Katrini Guidolini</creatorcontrib><creatorcontrib>de Paula, Anderson Vicente</creatorcontrib><creatorcontrib>de Castro Conde Toscano, Ana Luiza</creatorcontrib><creatorcontrib>Braz-Silva, Paulo Henrique</creatorcontrib><creatorcontrib>dos Santos Barbosa Netto, Juliana</creatorcontrib><creatorcontrib>Tozetto-Mendoza, Tania Regina</creatorcontrib><creatorcontrib>de Paula, Vanessa Salete</creatorcontrib><title>Introduction of human gammaherpesvirus 8 genotypes A, B, and C into Brazil from multiple geographic regions</title><title>Virus research</title><addtitle>Virus Res</addtitle><description>•HHV-8 genotypes A, B and C were present in isolates from Brazilian HIV/KS patients.•Genotype C was predominant (45.8 %), followed by genotypes A (29.2 %) and B (25 %).•HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group.•HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo.•HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana.
Variations in the open reading frame (ORF) K1 gene sequence of human gammaherpesvirus 8 (HHV-8) has led to the identification of 6 major genotypic clades (A, B, C, D, E, and F) in specimens isolated from around the world. These clades exhibit clear clustering among individuals in different ethnic groups and from different geographic regions. The human population of Brazil varies greatly in ethnicity because of multiple immigration events from Africa, Europe, Asia, and indigenous communities. However, there is scant information about the HHV-8 genotypes currently circulating in Brazil. Here, we describe HHV-8 genotypic diversity in isolates from Brazilian HIV-infected patients living with Kaposi’s sarcoma (KS) by analysis of the complete ORF-K1 region. We also identified the most likely geographic origins of these different Brazilian genotypes. We extracted HHV-8 DNA (24 positive samples) from individuals with HIV/KS from the states of São Paulo and Rio de Janeiro, amplified the ORF-K1 gene using nested PCR (about 870 base pairs), performed sequencing and phylogenetic analysis, and then calculated the mean genetic distances of Brazilian sequences from sequences in other regions of the world (523 sequences analyzed). Phylogenetic analysis showed that genotypes C, A, and B were present in 45.8 %, 29.2 % and 25 % of the isolates from Brazil, respectively. These isolates grouped into separate clades, rather than a single monophyletic cluster. Mean genetic distance analyses suggested that these genotypes were introduced into the Brazil multiple times from different geographical regions. HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group; HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo; and HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana. These results contribute to a better understanding of the genetic diversity and origins of HHV-8 strains circulating in Brazil, and will provide a foundation for further epidemiological and evolutionary studies of HHV-8.</description><subject>Adult</subject><subject>Algeria</subject><subject>Australia</subject><subject>Brazil</subject><subject>Brazil - epidemiology</subject><subject>Communicable Diseases, Imported - epidemiology</subject><subject>Communicable Diseases, Imported - virology</subject><subject>Democratic Republic of the Congo</subject><subject>DNA</subject><subject>England</subject><subject>Female</subject><subject>French Guiana</subject><subject>genes</subject><subject>Genetic distance</subject><subject>Genetic Variation</subject><subject>Genotype</subject><subject>Genotypic diversity</subject><subject>Genotyping</subject><subject>Geography</subject><subject>Herpesviridae Infections - epidemiology</subject><subject>Herpesvirus 8, Human - classification</subject><subject>Herpesvirus 8, Human - genetics</subject><subject>HIV infections</subject><subject>HIV Infections - virology</subject><subject>Human gammaherpesvirus 8</subject><subject>Human immunodeficiency virus</subject><subject>human population</subject><subject>Humans</subject><subject>immigration</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Molecular Epidemiology</subject><subject>monophyly</subject><subject>nationalities and ethnic groups</subject><subject>open reading frames</subject><subject>patients</subject><subject>Phylogeny</subject><subject>polymerase chain reaction</subject><subject>provenance</subject><subject>Republic of the Congo</subject><subject>Retrospective Studies</subject><subject>Russia</subject><subject>Saliva - virology</subject><subject>sarcoma</subject><subject>Sarcoma, Kaposi - virology</subject><subject>Sequence Analysis, DNA</subject><subject>Ukraine</subject><subject>Young Adult</subject><issn>0168-1702</issn><issn>1872-7492</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkctu2zAQRYkiQeM6_YWAyywil6RokdzVNvoIYKCbZE1Q1NCmK4kqKRlwvr50nXSb1QCDc-cCcxC6o2RBCa2-HBZHH6cUIS0YoWpBlZBMfkAzKgUrBFfsCs0yKAsqCLtBn1I6EEKqUlQf0U1JheJCVTP0-7EfY2gmO_rQ4-DwfupMj3em68we4gDpXw-WeAd9GE95gVcPeP2ATd_gDfb9GPA6mhffYhdDh7upHf3QQubDLpph7y2OsMvX0y26dqZN8Pl1ztHz929Pm5_F9tePx81qW1jO1Vg4UzruKFQSlkoI7kwtiTXL0lppxJK6ygCTpCmdFDVrZC2A1Iw62jCwhtNyju4vd4cY_kyQRt35ZKFtTQ9hSppxQrhShJH30ZLRStAlZxmtLqiNIeXHOz1E35l40pTosxN90G9O9NmJvjjJwbvXjqnuoPkfe5OQga8XAPJTjh6iTtZDb6HxEeyom-Df6_gLORKiWg</recordid><startdate>20200115</startdate><enddate>20200115</enddate><creator>de Oliveira Lopes, Amanda</creator><creator>Spitz, Natália</creator><creator>Martinelli, Katrini Guidolini</creator><creator>de Paula, Anderson Vicente</creator><creator>de Castro Conde Toscano, Ana Luiza</creator><creator>Braz-Silva, Paulo Henrique</creator><creator>dos Santos Barbosa Netto, Juliana</creator><creator>Tozetto-Mendoza, Tania Regina</creator><creator>de Paula, Vanessa Salete</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>20200115</creationdate><title>Introduction of human gammaherpesvirus 8 genotypes A, B, and C into Brazil from multiple geographic regions</title><author>de Oliveira Lopes, Amanda ; Spitz, Natália ; Martinelli, Katrini Guidolini ; de Paula, Anderson Vicente ; de Castro Conde Toscano, Ana Luiza ; Braz-Silva, Paulo Henrique ; dos Santos Barbosa Netto, Juliana ; Tozetto-Mendoza, Tania Regina ; de Paula, Vanessa Salete</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c449t-fa3f4f1e68e59774fab80ca53cc8a751f6ae280d3f87b2d8b7e0b21f1d2eca413</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Adult</topic><topic>Algeria</topic><topic>Australia</topic><topic>Brazil</topic><topic>Brazil - epidemiology</topic><topic>Communicable Diseases, Imported - epidemiology</topic><topic>Communicable Diseases, Imported - virology</topic><topic>Democratic Republic of the Congo</topic><topic>DNA</topic><topic>England</topic><topic>Female</topic><topic>French Guiana</topic><topic>genes</topic><topic>Genetic distance</topic><topic>Genetic Variation</topic><topic>Genotype</topic><topic>Genotypic diversity</topic><topic>Genotyping</topic><topic>Geography</topic><topic>Herpesviridae Infections - epidemiology</topic><topic>Herpesvirus 8, Human - classification</topic><topic>Herpesvirus 8, Human - genetics</topic><topic>HIV infections</topic><topic>HIV Infections - virology</topic><topic>Human gammaherpesvirus 8</topic><topic>Human immunodeficiency virus</topic><topic>human population</topic><topic>Humans</topic><topic>immigration</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Molecular Epidemiology</topic><topic>monophyly</topic><topic>nationalities and ethnic groups</topic><topic>open reading frames</topic><topic>patients</topic><topic>Phylogeny</topic><topic>polymerase chain reaction</topic><topic>provenance</topic><topic>Republic of the Congo</topic><topic>Retrospective Studies</topic><topic>Russia</topic><topic>Saliva - virology</topic><topic>sarcoma</topic><topic>Sarcoma, Kaposi - virology</topic><topic>Sequence Analysis, DNA</topic><topic>Ukraine</topic><topic>Young Adult</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>de Oliveira Lopes, Amanda</creatorcontrib><creatorcontrib>Spitz, Natália</creatorcontrib><creatorcontrib>Martinelli, Katrini Guidolini</creatorcontrib><creatorcontrib>de Paula, Anderson Vicente</creatorcontrib><creatorcontrib>de Castro Conde Toscano, Ana Luiza</creatorcontrib><creatorcontrib>Braz-Silva, Paulo Henrique</creatorcontrib><creatorcontrib>dos Santos Barbosa Netto, Juliana</creatorcontrib><creatorcontrib>Tozetto-Mendoza, Tania Regina</creatorcontrib><creatorcontrib>de Paula, Vanessa Salete</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Virus research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>de Oliveira Lopes, Amanda</au><au>Spitz, Natália</au><au>Martinelli, Katrini Guidolini</au><au>de Paula, Anderson Vicente</au><au>de Castro Conde Toscano, Ana Luiza</au><au>Braz-Silva, Paulo Henrique</au><au>dos Santos Barbosa Netto, Juliana</au><au>Tozetto-Mendoza, Tania Regina</au><au>de Paula, Vanessa Salete</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Introduction of human gammaherpesvirus 8 genotypes A, B, and C into Brazil from multiple geographic regions</atitle><jtitle>Virus research</jtitle><addtitle>Virus Res</addtitle><date>2020-01-15</date><risdate>2020</risdate><volume>276</volume><spage>197828</spage><epage>197828</epage><pages>197828-197828</pages><artnum>197828</artnum><issn>0168-1702</issn><eissn>1872-7492</eissn><abstract>•HHV-8 genotypes A, B and C were present in isolates from Brazilian HIV/KS patients.•Genotype C was predominant (45.8 %), followed by genotypes A (29.2 %) and B (25 %).•HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group.•HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo.•HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana.
Variations in the open reading frame (ORF) K1 gene sequence of human gammaherpesvirus 8 (HHV-8) has led to the identification of 6 major genotypic clades (A, B, C, D, E, and F) in specimens isolated from around the world. These clades exhibit clear clustering among individuals in different ethnic groups and from different geographic regions. The human population of Brazil varies greatly in ethnicity because of multiple immigration events from Africa, Europe, Asia, and indigenous communities. However, there is scant information about the HHV-8 genotypes currently circulating in Brazil. Here, we describe HHV-8 genotypic diversity in isolates from Brazilian HIV-infected patients living with Kaposi’s sarcoma (KS) by analysis of the complete ORF-K1 region. We also identified the most likely geographic origins of these different Brazilian genotypes. We extracted HHV-8 DNA (24 positive samples) from individuals with HIV/KS from the states of São Paulo and Rio de Janeiro, amplified the ORF-K1 gene using nested PCR (about 870 base pairs), performed sequencing and phylogenetic analysis, and then calculated the mean genetic distances of Brazilian sequences from sequences in other regions of the world (523 sequences analyzed). Phylogenetic analysis showed that genotypes C, A, and B were present in 45.8 %, 29.2 % and 25 % of the isolates from Brazil, respectively. These isolates grouped into separate clades, rather than a single monophyletic cluster. Mean genetic distance analyses suggested that these genotypes were introduced into the Brazil multiple times from different geographical regions. HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group; HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo; and HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana. These results contribute to a better understanding of the genetic diversity and origins of HHV-8 strains circulating in Brazil, and will provide a foundation for further epidemiological and evolutionary studies of HHV-8.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>31794796</pmid><doi>10.1016/j.virusres.2019.197828</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Adult Algeria Australia Brazil Brazil - epidemiology Communicable Diseases, Imported - epidemiology Communicable Diseases, Imported - virology Democratic Republic of the Congo DNA England Female French Guiana genes Genetic distance Genetic Variation Genotype Genotypic diversity Genotyping Geography Herpesviridae Infections - epidemiology Herpesvirus 8, Human - classification Herpesvirus 8, Human - genetics HIV infections HIV Infections - virology Human gammaherpesvirus 8 Human immunodeficiency virus human population Humans immigration Male Middle Aged Molecular Epidemiology monophyly nationalities and ethnic groups open reading frames patients Phylogeny polymerase chain reaction provenance Republic of the Congo Retrospective Studies Russia Saliva - virology sarcoma Sarcoma, Kaposi - virology Sequence Analysis, DNA Ukraine Young Adult |
title | Introduction of human gammaherpesvirus 8 genotypes A, B, and C into Brazil from multiple geographic regions |
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