Introduction of human gammaherpesvirus 8 genotypes A, B, and C into Brazil from multiple geographic regions

•HHV-8 genotypes A, B and C were present in isolates from Brazilian HIV/KS patients.•Genotype C was predominant (45.8 %), followed by genotypes A (29.2 %) and B (25 %).•HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group.•HHV-8/B isolates appear to be from Congo and Democ...

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Veröffentlicht in:Virus research 2020-01, Vol.276, p.197828-197828, Article 197828
Hauptverfasser: de Oliveira Lopes, Amanda, Spitz, Natália, Martinelli, Katrini Guidolini, de Paula, Anderson Vicente, de Castro Conde Toscano, Ana Luiza, Braz-Silva, Paulo Henrique, dos Santos Barbosa Netto, Juliana, Tozetto-Mendoza, Tania Regina, de Paula, Vanessa Salete
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container_title Virus research
container_volume 276
creator de Oliveira Lopes, Amanda
Spitz, Natália
Martinelli, Katrini Guidolini
de Paula, Anderson Vicente
de Castro Conde Toscano, Ana Luiza
Braz-Silva, Paulo Henrique
dos Santos Barbosa Netto, Juliana
Tozetto-Mendoza, Tania Regina
de Paula, Vanessa Salete
description •HHV-8 genotypes A, B and C were present in isolates from Brazilian HIV/KS patients.•Genotype C was predominant (45.8 %), followed by genotypes A (29.2 %) and B (25 %).•HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group.•HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo.•HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana. Variations in the open reading frame (ORF) K1 gene sequence of human gammaherpesvirus 8 (HHV-8) has led to the identification of 6 major genotypic clades (A, B, C, D, E, and F) in specimens isolated from around the world. These clades exhibit clear clustering among individuals in different ethnic groups and from different geographic regions. The human population of Brazil varies greatly in ethnicity because of multiple immigration events from Africa, Europe, Asia, and indigenous communities. However, there is scant information about the HHV-8 genotypes currently circulating in Brazil. Here, we describe HHV-8 genotypic diversity in isolates from Brazilian HIV-infected patients living with Kaposi’s sarcoma (KS) by analysis of the complete ORF-K1 region. We also identified the most likely geographic origins of these different Brazilian genotypes. We extracted HHV-8 DNA (24 positive samples) from individuals with HIV/KS from the states of São Paulo and Rio de Janeiro, amplified the ORF-K1 gene using nested PCR (about 870 base pairs), performed sequencing and phylogenetic analysis, and then calculated the mean genetic distances of Brazilian sequences from sequences in other regions of the world (523 sequences analyzed). Phylogenetic analysis showed that genotypes C, A, and B were present in 45.8 %, 29.2 % and 25 % of the isolates from Brazil, respectively. These isolates grouped into separate clades, rather than a single monophyletic cluster. Mean genetic distance analyses suggested that these genotypes were introduced into the Brazil multiple times from different geographical regions. HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group; HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo; and HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana. These results contribute to a better understanding of the genetic diversity and origins of HHV-8 strains circulating in Brazil, and will provide a foundation for further epidemiological and evolutionary studies of HHV-8.
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Variations in the open reading frame (ORF) K1 gene sequence of human gammaherpesvirus 8 (HHV-8) has led to the identification of 6 major genotypic clades (A, B, C, D, E, and F) in specimens isolated from around the world. These clades exhibit clear clustering among individuals in different ethnic groups and from different geographic regions. The human population of Brazil varies greatly in ethnicity because of multiple immigration events from Africa, Europe, Asia, and indigenous communities. However, there is scant information about the HHV-8 genotypes currently circulating in Brazil. Here, we describe HHV-8 genotypic diversity in isolates from Brazilian HIV-infected patients living with Kaposi’s sarcoma (KS) by analysis of the complete ORF-K1 region. We also identified the most likely geographic origins of these different Brazilian genotypes. We extracted HHV-8 DNA (24 positive samples) from individuals with HIV/KS from the states of São Paulo and Rio de Janeiro, amplified the ORF-K1 gene using nested PCR (about 870 base pairs), performed sequencing and phylogenetic analysis, and then calculated the mean genetic distances of Brazilian sequences from sequences in other regions of the world (523 sequences analyzed). Phylogenetic analysis showed that genotypes C, A, and B were present in 45.8 %, 29.2 % and 25 % of the isolates from Brazil, respectively. These isolates grouped into separate clades, rather than a single monophyletic cluster. Mean genetic distance analyses suggested that these genotypes were introduced into the Brazil multiple times from different geographical regions. HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group; HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo; and HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana. 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All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c449t-fa3f4f1e68e59774fab80ca53cc8a751f6ae280d3f87b2d8b7e0b21f1d2eca413</citedby><cites>FETCH-LOGICAL-c449t-fa3f4f1e68e59774fab80ca53cc8a751f6ae280d3f87b2d8b7e0b21f1d2eca413</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0168170219306471$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31794796$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>de Oliveira Lopes, Amanda</creatorcontrib><creatorcontrib>Spitz, Natália</creatorcontrib><creatorcontrib>Martinelli, Katrini Guidolini</creatorcontrib><creatorcontrib>de Paula, Anderson Vicente</creatorcontrib><creatorcontrib>de Castro Conde Toscano, Ana Luiza</creatorcontrib><creatorcontrib>Braz-Silva, Paulo Henrique</creatorcontrib><creatorcontrib>dos Santos Barbosa Netto, Juliana</creatorcontrib><creatorcontrib>Tozetto-Mendoza, Tania Regina</creatorcontrib><creatorcontrib>de Paula, Vanessa Salete</creatorcontrib><title>Introduction of human gammaherpesvirus 8 genotypes A, B, and C into Brazil from multiple geographic regions</title><title>Virus research</title><addtitle>Virus Res</addtitle><description>•HHV-8 genotypes A, B and C were present in isolates from Brazilian HIV/KS patients.•Genotype C was predominant (45.8 %), followed by genotypes A (29.2 %) and B (25 %).•HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group.•HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo.•HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana. Variations in the open reading frame (ORF) K1 gene sequence of human gammaherpesvirus 8 (HHV-8) has led to the identification of 6 major genotypic clades (A, B, C, D, E, and F) in specimens isolated from around the world. These clades exhibit clear clustering among individuals in different ethnic groups and from different geographic regions. The human population of Brazil varies greatly in ethnicity because of multiple immigration events from Africa, Europe, Asia, and indigenous communities. However, there is scant information about the HHV-8 genotypes currently circulating in Brazil. Here, we describe HHV-8 genotypic diversity in isolates from Brazilian HIV-infected patients living with Kaposi’s sarcoma (KS) by analysis of the complete ORF-K1 region. We also identified the most likely geographic origins of these different Brazilian genotypes. We extracted HHV-8 DNA (24 positive samples) from individuals with HIV/KS from the states of São Paulo and Rio de Janeiro, amplified the ORF-K1 gene using nested PCR (about 870 base pairs), performed sequencing and phylogenetic analysis, and then calculated the mean genetic distances of Brazilian sequences from sequences in other regions of the world (523 sequences analyzed). Phylogenetic analysis showed that genotypes C, A, and B were present in 45.8 %, 29.2 % and 25 % of the isolates from Brazil, respectively. These isolates grouped into separate clades, rather than a single monophyletic cluster. Mean genetic distance analyses suggested that these genotypes were introduced into the Brazil multiple times from different geographical regions. HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group; HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo; and HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana. 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Spitz, Natália ; Martinelli, Katrini Guidolini ; de Paula, Anderson Vicente ; de Castro Conde Toscano, Ana Luiza ; Braz-Silva, Paulo Henrique ; dos Santos Barbosa Netto, Juliana ; Tozetto-Mendoza, Tania Regina ; de Paula, Vanessa Salete</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c449t-fa3f4f1e68e59774fab80ca53cc8a751f6ae280d3f87b2d8b7e0b21f1d2eca413</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Adult</topic><topic>Algeria</topic><topic>Australia</topic><topic>Brazil</topic><topic>Brazil - epidemiology</topic><topic>Communicable Diseases, Imported - epidemiology</topic><topic>Communicable Diseases, Imported - virology</topic><topic>Democratic Republic of the Congo</topic><topic>DNA</topic><topic>England</topic><topic>Female</topic><topic>French Guiana</topic><topic>genes</topic><topic>Genetic distance</topic><topic>Genetic Variation</topic><topic>Genotype</topic><topic>Genotypic diversity</topic><topic>Genotyping</topic><topic>Geography</topic><topic>Herpesviridae Infections - epidemiology</topic><topic>Herpesvirus 8, Human - classification</topic><topic>Herpesvirus 8, Human - genetics</topic><topic>HIV infections</topic><topic>HIV Infections - virology</topic><topic>Human gammaherpesvirus 8</topic><topic>Human immunodeficiency virus</topic><topic>human population</topic><topic>Humans</topic><topic>immigration</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Molecular Epidemiology</topic><topic>monophyly</topic><topic>nationalities and ethnic groups</topic><topic>open reading frames</topic><topic>patients</topic><topic>Phylogeny</topic><topic>polymerase chain reaction</topic><topic>provenance</topic><topic>Republic of the Congo</topic><topic>Retrospective Studies</topic><topic>Russia</topic><topic>Saliva - virology</topic><topic>sarcoma</topic><topic>Sarcoma, Kaposi - virology</topic><topic>Sequence Analysis, DNA</topic><topic>Ukraine</topic><topic>Young Adult</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>de Oliveira Lopes, Amanda</creatorcontrib><creatorcontrib>Spitz, Natália</creatorcontrib><creatorcontrib>Martinelli, Katrini Guidolini</creatorcontrib><creatorcontrib>de Paula, Anderson Vicente</creatorcontrib><creatorcontrib>de Castro Conde Toscano, Ana Luiza</creatorcontrib><creatorcontrib>Braz-Silva, Paulo Henrique</creatorcontrib><creatorcontrib>dos Santos Barbosa Netto, Juliana</creatorcontrib><creatorcontrib>Tozetto-Mendoza, Tania Regina</creatorcontrib><creatorcontrib>de Paula, Vanessa Salete</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Virus research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>de Oliveira Lopes, Amanda</au><au>Spitz, Natália</au><au>Martinelli, Katrini Guidolini</au><au>de Paula, Anderson Vicente</au><au>de Castro Conde Toscano, Ana Luiza</au><au>Braz-Silva, Paulo Henrique</au><au>dos Santos Barbosa Netto, Juliana</au><au>Tozetto-Mendoza, Tania Regina</au><au>de Paula, Vanessa Salete</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Introduction of human gammaherpesvirus 8 genotypes A, B, and C into Brazil from multiple geographic regions</atitle><jtitle>Virus research</jtitle><addtitle>Virus Res</addtitle><date>2020-01-15</date><risdate>2020</risdate><volume>276</volume><spage>197828</spage><epage>197828</epage><pages>197828-197828</pages><artnum>197828</artnum><issn>0168-1702</issn><eissn>1872-7492</eissn><abstract>•HHV-8 genotypes A, B and C were present in isolates from Brazilian HIV/KS patients.•Genotype C was predominant (45.8 %), followed by genotypes A (29.2 %) and B (25 %).•HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group.•HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo.•HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana. 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We extracted HHV-8 DNA (24 positive samples) from individuals with HIV/KS from the states of São Paulo and Rio de Janeiro, amplified the ORF-K1 gene using nested PCR (about 870 base pairs), performed sequencing and phylogenetic analysis, and then calculated the mean genetic distances of Brazilian sequences from sequences in other regions of the world (523 sequences analyzed). Phylogenetic analysis showed that genotypes C, A, and B were present in 45.8 %, 29.2 % and 25 % of the isolates from Brazil, respectively. These isolates grouped into separate clades, rather than a single monophyletic cluster. Mean genetic distance analyses suggested that these genotypes were introduced into the Brazil multiple times from different geographical regions. HHV-8/A isolates appear to be from Ukraine, Russia, and the Tartar ethnic group; HHV-8/B isolates appear to be from Congo and Democratic Republic of the Congo; and HHV-8/C isolates appear to be from Australia, Algeria, England, and French Guiana. 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source MEDLINE; Elsevier ScienceDirect Journals
subjects Adult
Algeria
Australia
Brazil
Brazil - epidemiology
Communicable Diseases, Imported - epidemiology
Communicable Diseases, Imported - virology
Democratic Republic of the Congo
DNA
England
Female
French Guiana
genes
Genetic distance
Genetic Variation
Genotype
Genotypic diversity
Genotyping
Geography
Herpesviridae Infections - epidemiology
Herpesvirus 8, Human - classification
Herpesvirus 8, Human - genetics
HIV infections
HIV Infections - virology
Human gammaherpesvirus 8
Human immunodeficiency virus
human population
Humans
immigration
Male
Middle Aged
Molecular Epidemiology
monophyly
nationalities and ethnic groups
open reading frames
patients
Phylogeny
polymerase chain reaction
provenance
Republic of the Congo
Retrospective Studies
Russia
Saliva - virology
sarcoma
Sarcoma, Kaposi - virology
Sequence Analysis, DNA
Ukraine
Young Adult
title Introduction of human gammaherpesvirus 8 genotypes A, B, and C into Brazil from multiple geographic regions
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