Streptomyces albicerus sp. nov., a novel actinomycete isolated from the sediments of the Tailan River in Xinjiang, China
A novel actinomycete, designated TRM68295 T , was isolated from the sediments of the Tailan River, Xinjiang, northwest China. The study of the polyphasic approach showed that the characteristics of the strain were consistent with the genus Streptomyces . Phylogenetic analysis indicated that the stra...
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| creator | Sun, Beibei Yuan, Linlin Xia, Zhanfeng Wan, Chuanxing Zhang, Lili |
| description | A novel actinomycete, designated TRM68295
T
, was isolated from the sediments of the Tailan River, Xinjiang, northwest China. The study of the polyphasic approach showed that the characteristics of the strain were consistent with the genus
Streptomyces
. Phylogenetic analysis indicated that the strain had a high sequence similarity with
Streptomyces phaeochromogenes
ATCC 3338
T
(97.9%). The diagnostic diamino acid of cell walls was identified as
ll
-diaminopimelic acid. The whole cell sugars were identified as ribose, xylose, glucose and galactose. The major fatty acids were iso-C
14:0
, iso-C
15:0
, anteiso-C
15:0
, iso-C
16:0
, C
16:1
ω9c, C
16:0
and anteiso-C
17:0
. The major menaquinones were MK-9 (H
10
), MK-9 (H
6
) and MK-9 (H
2
). The polar lipids were composed of diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), phosphatidylcholine (PC), phosphatidylinositol (PI) and phosphatidylinositol mannoside (PIM). The G+C content in the draft genome sequence of the strain was identified as 70.0 mol%. The average nucleotide identity (ANI) between strains TRM68295
T
and
S. phaeochromogenes
ATCC 3338
T
was 88.1%. Digital DNA-DNA hybridization (dDDH) value between strain TRM68295
T
and
S. phaeochromogenes
ATCC 3338
T
was 40.7%. The multilocus sequence analysis of five house-keeping genes (
atp
D,
gyr
B,
rec
A,
rpo
B, and
trp
B) indicated that the MLSA distances between the strain and similar species were greater than the threshold of 0.007. Based on the above studies, strain TRM68295
T
is considered as a novel species of the genus
Streptomyces
, for which the name
Streptomyces albicerus
sp. nov. is proposed. The type strain is TRM68295
T
(= CCTCC AA 2018085
T
= KCTC 49272
T
). |
| doi_str_mv | 10.1007/s00203-020-01871-6 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2388818670</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2427390617</sourcerecordid><originalsourceid>FETCH-LOGICAL-c2906-7463ac561ddc323a949d1e986857d470aaf7f8256732a1f56724a7dd1df2fbb63</originalsourceid><addsrcrecordid>eNp9kc1q3DAUhUVpaaZJXyCLIOimi3gqXdmWvAxD-gOBQptAdkJjXSUabGki2SF5-2pm0ha66OYekD6de9Ah5JSzJWdMfsqMARNVGRXjSvKqfUUWvBZQMQm3r8mCCQaV6oQ4Iu9y3jDGQSn1lhwJAFk3jVqQp59Twu0Ux-ceMzXD2veY5kzzdklDfFyeU7NTHKjpJx_23ITU5ziYCS11KY50ukea0foRw5RpdPuDa-MHE-gP_4iJ-kBvfdh4E-7O6ereB3NC3jgzZHz_osfk5vPl9eprdfX9y7fVxVXVQ8faStatMH3Tcmt7AcJ0dWc5dqpVjbS1ZMY46RQ0rRRguCsKtZHWcuvArdetOCYfD77bFB9mzJMefe5xKNkwzlmDKF_CVStZQT_8g27inEJJp6EGKUoeLgsFB6pPMeeETm-TH0161pzpXS_60IsuQ-970bsUZy_W83pE--fJ7yIKIA5ALlfhDtPf3f-x_QWMhZfW</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2427390617</pqid></control><display><type>article</type><title>Streptomyces albicerus sp. nov., a novel actinomycete isolated from the sediments of the Tailan River in Xinjiang, China</title><source>Springer Nature - Complete Springer Journals</source><creator>Sun, Beibei ; Yuan, Linlin ; Xia, Zhanfeng ; Wan, Chuanxing ; Zhang, Lili</creator><creatorcontrib>Sun, Beibei ; Yuan, Linlin ; Xia, Zhanfeng ; Wan, Chuanxing ; Zhang, Lili</creatorcontrib><description>A novel actinomycete, designated TRM68295
T
, was isolated from the sediments of the Tailan River, Xinjiang, northwest China. The study of the polyphasic approach showed that the characteristics of the strain were consistent with the genus
Streptomyces
. Phylogenetic analysis indicated that the strain had a high sequence similarity with
Streptomyces phaeochromogenes
ATCC 3338
T
(97.9%). The diagnostic diamino acid of cell walls was identified as
ll
-diaminopimelic acid. The whole cell sugars were identified as ribose, xylose, glucose and galactose. The major fatty acids were iso-C
14:0
, iso-C
15:0
, anteiso-C
15:0
, iso-C
16:0
, C
16:1
ω9c, C
16:0
and anteiso-C
17:0
. The major menaquinones were MK-9 (H
10
), MK-9 (H
6
) and MK-9 (H
2
). The polar lipids were composed of diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), phosphatidylcholine (PC), phosphatidylinositol (PI) and phosphatidylinositol mannoside (PIM). The G+C content in the draft genome sequence of the strain was identified as 70.0 mol%. The average nucleotide identity (ANI) between strains TRM68295
T
and
S. phaeochromogenes
ATCC 3338
T
was 88.1%. Digital DNA-DNA hybridization (dDDH) value between strain TRM68295
T
and
S. phaeochromogenes
ATCC 3338
T
was 40.7%. The multilocus sequence analysis of five house-keeping genes (
atp
D,
gyr
B,
rec
A,
rpo
B, and
trp
B) indicated that the MLSA distances between the strain and similar species were greater than the threshold of 0.007. Based on the above studies, strain TRM68295
T
is considered as a novel species of the genus
Streptomyces
, for which the name
Streptomyces albicerus
sp. nov. is proposed. The type strain is TRM68295
T
(= CCTCC AA 2018085
T
= KCTC 49272
T
).</description><identifier>ISSN: 0302-8933</identifier><identifier>EISSN: 1432-072X</identifier><identifier>DOI: 10.1007/s00203-020-01871-6</identifier><identifier>PMID: 32274558</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Cardiolipin ; Cell Biology ; Cell walls ; Deoxyribonucleic acid ; Diagnostic systems ; DNA ; Ecology ; Fatty acids ; Galactose ; Genomes ; Hybridization ; Lecithin ; Life Sciences ; Lipids ; Menaquinones ; Microbial Ecology ; Microbiology ; New species ; Nucleotide sequence ; Nucleotides ; Original Paper ; Phosphatidylcholine ; Phosphatidylethanolamine ; Phosphatidylglycerol ; Phosphatidylinositol ; Phylogeny ; RecA protein ; Ribose ; Rivers ; RpoB protein ; Sediments ; Sequence analysis ; Streptomyces ; Sugar</subject><ispartof>Archives of microbiology, 2020-09, Vol.202 (7), p.1639-1646</ispartof><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2020</rights><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2906-7463ac561ddc323a949d1e986857d470aaf7f8256732a1f56724a7dd1df2fbb63</citedby><cites>FETCH-LOGICAL-c2906-7463ac561ddc323a949d1e986857d470aaf7f8256732a1f56724a7dd1df2fbb63</cites><orcidid>0000-0002-9103-1181</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00203-020-01871-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00203-020-01871-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32274558$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sun, Beibei</creatorcontrib><creatorcontrib>Yuan, Linlin</creatorcontrib><creatorcontrib>Xia, Zhanfeng</creatorcontrib><creatorcontrib>Wan, Chuanxing</creatorcontrib><creatorcontrib>Zhang, Lili</creatorcontrib><title>Streptomyces albicerus sp. nov., a novel actinomycete isolated from the sediments of the Tailan River in Xinjiang, China</title><title>Archives of microbiology</title><addtitle>Arch Microbiol</addtitle><addtitle>Arch Microbiol</addtitle><description>A novel actinomycete, designated TRM68295
T
, was isolated from the sediments of the Tailan River, Xinjiang, northwest China. The study of the polyphasic approach showed that the characteristics of the strain were consistent with the genus
Streptomyces
. Phylogenetic analysis indicated that the strain had a high sequence similarity with
Streptomyces phaeochromogenes
ATCC 3338
T
(97.9%). The diagnostic diamino acid of cell walls was identified as
ll
-diaminopimelic acid. The whole cell sugars were identified as ribose, xylose, glucose and galactose. The major fatty acids were iso-C
14:0
, iso-C
15:0
, anteiso-C
15:0
, iso-C
16:0
, C
16:1
ω9c, C
16:0
and anteiso-C
17:0
. The major menaquinones were MK-9 (H
10
), MK-9 (H
6
) and MK-9 (H
2
). The polar lipids were composed of diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), phosphatidylcholine (PC), phosphatidylinositol (PI) and phosphatidylinositol mannoside (PIM). The G+C content in the draft genome sequence of the strain was identified as 70.0 mol%. The average nucleotide identity (ANI) between strains TRM68295
T
and
S. phaeochromogenes
ATCC 3338
T
was 88.1%. Digital DNA-DNA hybridization (dDDH) value between strain TRM68295
T
and
S. phaeochromogenes
ATCC 3338
T
was 40.7%. The multilocus sequence analysis of five house-keeping genes (
atp
D,
gyr
B,
rec
A,
rpo
B, and
trp
B) indicated that the MLSA distances between the strain and similar species were greater than the threshold of 0.007. Based on the above studies, strain TRM68295
T
is considered as a novel species of the genus
Streptomyces
, for which the name
Streptomyces albicerus
sp. nov. is proposed. The type strain is TRM68295
T
(= CCTCC AA 2018085
T
= KCTC 49272
T
).</description><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Cardiolipin</subject><subject>Cell Biology</subject><subject>Cell walls</subject><subject>Deoxyribonucleic acid</subject><subject>Diagnostic systems</subject><subject>DNA</subject><subject>Ecology</subject><subject>Fatty acids</subject><subject>Galactose</subject><subject>Genomes</subject><subject>Hybridization</subject><subject>Lecithin</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Menaquinones</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>New species</subject><subject>Nucleotide sequence</subject><subject>Nucleotides</subject><subject>Original Paper</subject><subject>Phosphatidylcholine</subject><subject>Phosphatidylethanolamine</subject><subject>Phosphatidylglycerol</subject><subject>Phosphatidylinositol</subject><subject>Phylogeny</subject><subject>RecA protein</subject><subject>Ribose</subject><subject>Rivers</subject><subject>RpoB protein</subject><subject>Sediments</subject><subject>Sequence analysis</subject><subject>Streptomyces</subject><subject>Sugar</subject><issn>0302-8933</issn><issn>1432-072X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp9kc1q3DAUhUVpaaZJXyCLIOimi3gqXdmWvAxD-gOBQptAdkJjXSUabGki2SF5-2pm0ha66OYekD6de9Ah5JSzJWdMfsqMARNVGRXjSvKqfUUWvBZQMQm3r8mCCQaV6oQ4Iu9y3jDGQSn1lhwJAFk3jVqQp59Twu0Ux-ceMzXD2veY5kzzdklDfFyeU7NTHKjpJx_23ITU5ziYCS11KY50ukea0foRw5RpdPuDa-MHE-gP_4iJ-kBvfdh4E-7O6ereB3NC3jgzZHz_osfk5vPl9eprdfX9y7fVxVXVQ8faStatMH3Tcmt7AcJ0dWc5dqpVjbS1ZMY46RQ0rRRguCsKtZHWcuvArdetOCYfD77bFB9mzJMefe5xKNkwzlmDKF_CVStZQT_8g27inEJJp6EGKUoeLgsFB6pPMeeETm-TH0161pzpXS_60IsuQ-970bsUZy_W83pE--fJ7yIKIA5ALlfhDtPf3f-x_QWMhZfW</recordid><startdate>20200901</startdate><enddate>20200901</enddate><creator>Sun, Beibei</creator><creator>Yuan, Linlin</creator><creator>Xia, Zhanfeng</creator><creator>Wan, Chuanxing</creator><creator>Zhang, Lili</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-9103-1181</orcidid></search><sort><creationdate>20200901</creationdate><title>Streptomyces albicerus sp. nov., a novel actinomycete isolated from the sediments of the Tailan River in Xinjiang, China</title><author>Sun, Beibei ; Yuan, Linlin ; Xia, Zhanfeng ; Wan, Chuanxing ; Zhang, Lili</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2906-7463ac561ddc323a949d1e986857d470aaf7f8256732a1f56724a7dd1df2fbb63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Cardiolipin</topic><topic>Cell Biology</topic><topic>Cell walls</topic><topic>Deoxyribonucleic acid</topic><topic>Diagnostic systems</topic><topic>DNA</topic><topic>Ecology</topic><topic>Fatty acids</topic><topic>Galactose</topic><topic>Genomes</topic><topic>Hybridization</topic><topic>Lecithin</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Menaquinones</topic><topic>Microbial Ecology</topic><topic>Microbiology</topic><topic>New species</topic><topic>Nucleotide sequence</topic><topic>Nucleotides</topic><topic>Original Paper</topic><topic>Phosphatidylcholine</topic><topic>Phosphatidylethanolamine</topic><topic>Phosphatidylglycerol</topic><topic>Phosphatidylinositol</topic><topic>Phylogeny</topic><topic>RecA protein</topic><topic>Ribose</topic><topic>Rivers</topic><topic>RpoB protein</topic><topic>Sediments</topic><topic>Sequence analysis</topic><topic>Streptomyces</topic><topic>Sugar</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sun, Beibei</creatorcontrib><creatorcontrib>Yuan, Linlin</creatorcontrib><creatorcontrib>Xia, Zhanfeng</creatorcontrib><creatorcontrib>Wan, Chuanxing</creatorcontrib><creatorcontrib>Zhang, Lili</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sun, Beibei</au><au>Yuan, Linlin</au><au>Xia, Zhanfeng</au><au>Wan, Chuanxing</au><au>Zhang, Lili</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Streptomyces albicerus sp. nov., a novel actinomycete isolated from the sediments of the Tailan River in Xinjiang, China</atitle><jtitle>Archives of microbiology</jtitle><stitle>Arch Microbiol</stitle><addtitle>Arch Microbiol</addtitle><date>2020-09-01</date><risdate>2020</risdate><volume>202</volume><issue>7</issue><spage>1639</spage><epage>1646</epage><pages>1639-1646</pages><issn>0302-8933</issn><eissn>1432-072X</eissn><abstract>A novel actinomycete, designated TRM68295
T
, was isolated from the sediments of the Tailan River, Xinjiang, northwest China. The study of the polyphasic approach showed that the characteristics of the strain were consistent with the genus
Streptomyces
. Phylogenetic analysis indicated that the strain had a high sequence similarity with
Streptomyces phaeochromogenes
ATCC 3338
T
(97.9%). The diagnostic diamino acid of cell walls was identified as
ll
-diaminopimelic acid. The whole cell sugars were identified as ribose, xylose, glucose and galactose. The major fatty acids were iso-C
14:0
, iso-C
15:0
, anteiso-C
15:0
, iso-C
16:0
, C
16:1
ω9c, C
16:0
and anteiso-C
17:0
. The major menaquinones were MK-9 (H
10
), MK-9 (H
6
) and MK-9 (H
2
). The polar lipids were composed of diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), phosphatidylcholine (PC), phosphatidylinositol (PI) and phosphatidylinositol mannoside (PIM). The G+C content in the draft genome sequence of the strain was identified as 70.0 mol%. The average nucleotide identity (ANI) between strains TRM68295
T
and
S. phaeochromogenes
ATCC 3338
T
was 88.1%. Digital DNA-DNA hybridization (dDDH) value between strain TRM68295
T
and
S. phaeochromogenes
ATCC 3338
T
was 40.7%. The multilocus sequence analysis of five house-keeping genes (
atp
D,
gyr
B,
rec
A,
rpo
B, and
trp
B) indicated that the MLSA distances between the strain and similar species were greater than the threshold of 0.007. Based on the above studies, strain TRM68295
T
is considered as a novel species of the genus
Streptomyces
, for which the name
Streptomyces albicerus
sp. nov. is proposed. The type strain is TRM68295
T
(= CCTCC AA 2018085
T
= KCTC 49272
T
).</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>32274558</pmid><doi>10.1007/s00203-020-01871-6</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-9103-1181</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0302-8933 |
| ispartof | Archives of microbiology, 2020-09, Vol.202 (7), p.1639-1646 |
| issn | 0302-8933 1432-072X |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2388818670 |
| source | Springer Nature - Complete Springer Journals |
| subjects | Biochemistry Biomedical and Life Sciences Biotechnology Cardiolipin Cell Biology Cell walls Deoxyribonucleic acid Diagnostic systems DNA Ecology Fatty acids Galactose Genomes Hybridization Lecithin Life Sciences Lipids Menaquinones Microbial Ecology Microbiology New species Nucleotide sequence Nucleotides Original Paper Phosphatidylcholine Phosphatidylethanolamine Phosphatidylglycerol Phosphatidylinositol Phylogeny RecA protein Ribose Rivers RpoB protein Sediments Sequence analysis Streptomyces Sugar |
| title | Streptomyces albicerus sp. nov., a novel actinomycete isolated from the sediments of the Tailan River in Xinjiang, China |
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