Antibiotic resistance pattern of Escherichia coli isolates from outpatients with urinary tract infections in Somalia
Several studies suggest increasing rates of antibiotic resistance among adult populations with Urinary tract infections (UTI). Escherichia coli (E. coli), is the predominant bacterium both in the community and in hospital environments causing uropathogenic infections. This study aimed to estimate th...
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Veröffentlicht in: | Journal of infection in developing countries 2020-03, Vol.14 (3), p.284-289 |
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description | Several studies suggest increasing rates of antibiotic resistance among adult populations with Urinary tract infections (UTI). Escherichia coli (E. coli), is the predominant bacterium both in the community and in hospital environments causing uropathogenic infections. This study aimed to estimate the common uropathogen bacteria that cause UTI among outpatients as well as to determine the antibiotic resistance pattern of E. coli isolates among outpatients with UTI infections at Shaafi hospital, Mogadishu, Somalia.
A cross-sectional study was conducted at Shaafi Hospital, Mogadishu, Somalia. A total of 128 samples were collected from outpatients suspected of UTI and tested through bacteriological investigations and antimicrobial susceptibility tests following the Kirby-Bauer agar disc diffusion method.
E. coli was isolated in 34 (41%) out of the total 83 samples that showed growth followed by Staphylococcus aureus 22 (26.5%), Pseudomonas aeruginosa, 13 (15.7%), Klebsiella pneumoniae 8 (9.6 %) and Proteus spp. 6 (7.2%). E. coli was highly sensitive to nitrofurantoin, 29 (85.3%), and ciprofloxacin (n = 23, 67.6%), and had the highest resistance rate of ceftriaxone, 33 (97.1%). The odds of having UTI were higher in patients with a history of UTI (Odds ratio OR = 0.211, 95% confidence interval CI: 0.080, 0.553) and history of antibiotic use (OR = 0.322, 95% CI: 0.113, 0.917). Increased resistance rate of E. coli against cephalosporins could be due to its excessive use as empirical therapy.
The study indicates that outpatients with UTI could be at high risk of antibiotic resistance, suggesting regular surveillance and monitoring of antibiotics. |
doi_str_mv | 10.3855/jidc.12189 |
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A cross-sectional study was conducted at Shaafi Hospital, Mogadishu, Somalia. A total of 128 samples were collected from outpatients suspected of UTI and tested through bacteriological investigations and antimicrobial susceptibility tests following the Kirby-Bauer agar disc diffusion method.
E. coli was isolated in 34 (41%) out of the total 83 samples that showed growth followed by Staphylococcus aureus 22 (26.5%), Pseudomonas aeruginosa, 13 (15.7%), Klebsiella pneumoniae 8 (9.6 %) and Proteus spp. 6 (7.2%). E. coli was highly sensitive to nitrofurantoin, 29 (85.3%), and ciprofloxacin (n = 23, 67.6%), and had the highest resistance rate of ceftriaxone, 33 (97.1%). The odds of having UTI were higher in patients with a history of UTI (Odds ratio OR = 0.211, 95% confidence interval CI: 0.080, 0.553) and history of antibiotic use (OR = 0.322, 95% CI: 0.113, 0.917). Increased resistance rate of E. coli against cephalosporins could be due to its excessive use as empirical therapy.
The study indicates that outpatients with UTI could be at high risk of antibiotic resistance, suggesting regular surveillance and monitoring of antibiotics.</description><identifier>ISSN: 1972-2680</identifier><identifier>ISSN: 2036-6590</identifier><identifier>EISSN: 1972-2680</identifier><identifier>DOI: 10.3855/jidc.12189</identifier><identifier>PMID: 32235089</identifier><language>eng</language><publisher>Italy: Journal of Infection in Developing Countries</publisher><subject>Adult ; Anti-Bacterial Agents - pharmacology ; Antibiotics ; Antimicrobial agents ; Cross-Sectional Studies ; Drug resistance ; Drug Resistance, Multiple, Bacterial ; E coli ; Escherichia coli - drug effects ; Escherichia coli - isolation & purification ; Escherichia coli Infections - drug therapy ; Escherichia coli Infections - epidemiology ; Escherichia coli Infections - microbiology ; Female ; Humans ; Male ; Outpatients ; Prevalence ; Somalia - epidemiology ; Urinary tract diseases ; Urinary tract infections ; Urinary Tract Infections - drug therapy ; Urinary Tract Infections - epidemiology ; Urinary Tract Infections - microbiology ; Urogenital system ; Young Adult</subject><ispartof>Journal of infection in developing countries, 2020-03, Vol.14 (3), p.284-289</ispartof><rights>Copyright (c) 2020 Malyun Adam Mohamed, Omar Abdifetah, Fatima Abdullahi Hussein, Sa’adia Abdullahi Karie.</rights><rights>2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c315t-54ab020d8eaf993e4e6a7c431c6c816b19af91bb689c2b9acae6d5a00193a9f03</citedby><orcidid>0000-0002-4312-7365</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,778,782,27911,27912</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32235089$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Mohamed, Malyun Adam</creatorcontrib><creatorcontrib>Abdifetah, Omar</creatorcontrib><creatorcontrib>Hussein, Fatima Abdullahi</creatorcontrib><creatorcontrib>Karie, Sa'adia Abdullahi</creatorcontrib><title>Antibiotic resistance pattern of Escherichia coli isolates from outpatients with urinary tract infections in Somalia</title><title>Journal of infection in developing countries</title><addtitle>J Infect Dev Ctries</addtitle><description>Several studies suggest increasing rates of antibiotic resistance among adult populations with Urinary tract infections (UTI). Escherichia coli (E. coli), is the predominant bacterium both in the community and in hospital environments causing uropathogenic infections. This study aimed to estimate the common uropathogen bacteria that cause UTI among outpatients as well as to determine the antibiotic resistance pattern of E. coli isolates among outpatients with UTI infections at Shaafi hospital, Mogadishu, Somalia.
A cross-sectional study was conducted at Shaafi Hospital, Mogadishu, Somalia. A total of 128 samples were collected from outpatients suspected of UTI and tested through bacteriological investigations and antimicrobial susceptibility tests following the Kirby-Bauer agar disc diffusion method.
E. coli was isolated in 34 (41%) out of the total 83 samples that showed growth followed by Staphylococcus aureus 22 (26.5%), Pseudomonas aeruginosa, 13 (15.7%), Klebsiella pneumoniae 8 (9.6 %) and Proteus spp. 6 (7.2%). E. coli was highly sensitive to nitrofurantoin, 29 (85.3%), and ciprofloxacin (n = 23, 67.6%), and had the highest resistance rate of ceftriaxone, 33 (97.1%). The odds of having UTI were higher in patients with a history of UTI (Odds ratio OR = 0.211, 95% confidence interval CI: 0.080, 0.553) and history of antibiotic use (OR = 0.322, 95% CI: 0.113, 0.917). Increased resistance rate of E. coli against cephalosporins could be due to its excessive use as empirical therapy.
The study indicates that outpatients with UTI could be at high risk of antibiotic resistance, suggesting regular surveillance and monitoring of antibiotics.</description><subject>Adult</subject><subject>Anti-Bacterial Agents - pharmacology</subject><subject>Antibiotics</subject><subject>Antimicrobial agents</subject><subject>Cross-Sectional Studies</subject><subject>Drug resistance</subject><subject>Drug Resistance, Multiple, Bacterial</subject><subject>E coli</subject><subject>Escherichia coli - drug effects</subject><subject>Escherichia coli - isolation & purification</subject><subject>Escherichia coli Infections - drug therapy</subject><subject>Escherichia coli Infections - epidemiology</subject><subject>Escherichia coli Infections - microbiology</subject><subject>Female</subject><subject>Humans</subject><subject>Male</subject><subject>Outpatients</subject><subject>Prevalence</subject><subject>Somalia - epidemiology</subject><subject>Urinary tract diseases</subject><subject>Urinary tract infections</subject><subject>Urinary Tract Infections - drug therapy</subject><subject>Urinary Tract Infections - epidemiology</subject><subject>Urinary Tract Infections - microbiology</subject><subject>Urogenital system</subject><subject>Young Adult</subject><issn>1972-2680</issn><issn>2036-6590</issn><issn>1972-2680</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><recordid>eNpdkUtLxTAQhYMovjf-AAm4EeFqHk3bLEV8geBCXZdp7pQ7lza5Jiniv7fXF-JqDsPHYeYcxo6kONe1MRdLmrtzqWRtN9iutJWaqbIWm3_0DttLaSmEsdrIbbajldJG1HaX5UufqaWQyfGIiVIG75CvIGeMnoeOXye3wEhuQcBd6IlTCj1kTLyLYeBhzBNM6HPib5QXfIzkIb7zHMFlTr5Dlyn4NEn-FAboCQ7YVgd9wsPvuc9ebq6fr-5mD4-391eXDzOnpckzU0ArlJjXCJ21GgssoXKFlq50tSxbaae9bNuytk61FhxgOTcghLQabCf0Pjv98l3F8Dpiys1AyWHfg8cwpkZN8VVa2qKa0JN_6DKM0U_XNcqUQtiqqNbU2RflYkgpYtesIg3Tt40UzbqLZt1F89nFBB9_W47tgPNf9Cd8_QHOSIcN</recordid><startdate>20200331</startdate><enddate>20200331</enddate><creator>Mohamed, Malyun Adam</creator><creator>Abdifetah, Omar</creator><creator>Hussein, Fatima Abdullahi</creator><creator>Karie, Sa'adia Abdullahi</creator><general>Journal of Infection in Developing Countries</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8C1</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-4312-7365</orcidid></search><sort><creationdate>20200331</creationdate><title>Antibiotic resistance pattern of Escherichia coli isolates from outpatients with urinary tract infections in Somalia</title><author>Mohamed, Malyun Adam ; 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Escherichia coli (E. coli), is the predominant bacterium both in the community and in hospital environments causing uropathogenic infections. This study aimed to estimate the common uropathogen bacteria that cause UTI among outpatients as well as to determine the antibiotic resistance pattern of E. coli isolates among outpatients with UTI infections at Shaafi hospital, Mogadishu, Somalia.
A cross-sectional study was conducted at Shaafi Hospital, Mogadishu, Somalia. A total of 128 samples were collected from outpatients suspected of UTI and tested through bacteriological investigations and antimicrobial susceptibility tests following the Kirby-Bauer agar disc diffusion method.
E. coli was isolated in 34 (41%) out of the total 83 samples that showed growth followed by Staphylococcus aureus 22 (26.5%), Pseudomonas aeruginosa, 13 (15.7%), Klebsiella pneumoniae 8 (9.6 %) and Proteus spp. 6 (7.2%). E. coli was highly sensitive to nitrofurantoin, 29 (85.3%), and ciprofloxacin (n = 23, 67.6%), and had the highest resistance rate of ceftriaxone, 33 (97.1%). The odds of having UTI were higher in patients with a history of UTI (Odds ratio OR = 0.211, 95% confidence interval CI: 0.080, 0.553) and history of antibiotic use (OR = 0.322, 95% CI: 0.113, 0.917). Increased resistance rate of E. coli against cephalosporins could be due to its excessive use as empirical therapy.
The study indicates that outpatients with UTI could be at high risk of antibiotic resistance, suggesting regular surveillance and monitoring of antibiotics.</abstract><cop>Italy</cop><pub>Journal of Infection in Developing Countries</pub><pmid>32235089</pmid><doi>10.3855/jidc.12189</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0002-4312-7365</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Adult Anti-Bacterial Agents - pharmacology Antibiotics Antimicrobial agents Cross-Sectional Studies Drug resistance Drug Resistance, Multiple, Bacterial E coli Escherichia coli - drug effects Escherichia coli - isolation & purification Escherichia coli Infections - drug therapy Escherichia coli Infections - epidemiology Escherichia coli Infections - microbiology Female Humans Male Outpatients Prevalence Somalia - epidemiology Urinary tract diseases Urinary tract infections Urinary Tract Infections - drug therapy Urinary Tract Infections - epidemiology Urinary Tract Infections - microbiology Urogenital system Young Adult |
title | Antibiotic resistance pattern of Escherichia coli isolates from outpatients with urinary tract infections in Somalia |
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