Identification and characterization of a DevR-interacting protein in Aspergillus oryzae
The basic helix-loop-helix (bHLH) proteins belong to a superfamily of transcription factors. Recent research has shown that the bHLH transcription factor DevR is involved in both sexual and asexual development as well as conidial melanin production in Aspergillus species. Our previous research also...
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description | The basic helix-loop-helix (bHLH) proteins belong to a superfamily of transcription factors. Recent research has shown that the bHLH transcription factor DevR is involved in both sexual and asexual development as well as conidial melanin production in Aspergillus species. Our previous research also found that DevR significantly influences polysaccharide metabolism in Aspergillus oryzae. In this study, to further explore the function of DevR, its interaction proteins were screened by a yeast two-hybrid assay. An A. oryzae cDNA library was transformed into the Y187 strain by using the SMART technique and the homologous recombination method, and then hybridized with a constructed DevR bait plasmid introducing strain to obtain positive clones. Through sequencing analysis, the potential interaction proteins of DevR were determined. Among them, an AO090701000363 gene-encoding protein (named DipA), which was predicted to be a basic leucine zipper (bZIP) transcription factor, was a possible candidate. Phenotypic analysis indicated that overexpression of the AodipA may significantly suppress growth of the strain. Additionally, although no obvious change in the growth rate was found, the deletion of AodipA resulted in thicker hyphae morphology relative to the control. Comparative proteomic analysis further indicated that DipA was potentially involved in the regulation of cell wall integrity, carbon utilization, acetate catabolic process and other biological processes. Partial similarity of the phenotype to that of DevR suggested a correlation between them and implied that the DipA has a function partially similar to that of DevR.
•Yeast two-hybrid screening of proteins interacting with DevR.•A potential candidate, bZIP transcription factor, was identified.•Overexpression of the candidate gene inhibits growth of the strain.•The phenotype of deletion and overexpression of the gene was similar to that of DevR. |
doi_str_mv | 10.1016/j.funbio.2020.01.001 |
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•Yeast two-hybrid screening of proteins interacting with DevR.•A potential candidate, bZIP transcription factor, was identified.•Overexpression of the candidate gene inhibits growth of the strain.•The phenotype of deletion and overexpression of the gene was similar to that of DevR.</description><identifier>ISSN: 1878-6146</identifier><identifier>EISSN: 1878-6162</identifier><identifier>DOI: 10.1016/j.funbio.2020.01.001</identifier><identifier>PMID: 32220376</identifier><language>eng</language><publisher>Netherlands: Elsevier Ltd</publisher><subject>Aspergillus oryzae ; Aspergillus oryzae - genetics ; Aspergillus oryzae - growth & development ; Aspergillus oryzae - metabolism ; Carbohydrate Metabolism ; Cell Wall - metabolism ; DNA-Binding Proteins - chemistry ; DNA-Binding Proteins - genetics ; DNA-Binding Proteins - metabolism ; Fungal Proteins - chemistry ; Fungal Proteins - genetics ; Fungal Proteins - metabolism ; Genes, Fungal ; Helix-Loop-Helix Motifs - genetics ; Hyphae - growth & development ; Phenotype ; Protein–protein interaction ; Spores, Fungal - growth & development ; Transcription factor ; Transcription Factors - chemistry ; Transcription Factors - genetics ; Transcription Factors - metabolism ; Two-Hybrid System Techniques ; Yeast two-hybrid assay</subject><ispartof>Fungal biology, 2020-03, Vol.124 (3-4), p.155-163</ispartof><rights>2020 British Mycological Society</rights><rights>Copyright © 2020 British Mycological Society. Published by Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c428t-fb3fed62d52b2b4b844f1583850d428250cdd868f7118f1eaa50a12eb6051ff13</citedby><cites>FETCH-LOGICAL-c428t-fb3fed62d52b2b4b844f1583850d428250cdd868f7118f1eaa50a12eb6051ff13</cites><orcidid>0000-0003-0376-0964</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.funbio.2020.01.001$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3548,27923,27924,45994</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32220376$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Zhi-Min</creatorcontrib><creatorcontrib>Zhuang, Miao</creatorcontrib><creatorcontrib>Wang, Bao-Teng</creatorcontrib><creatorcontrib>Jin, Long</creatorcontrib><creatorcontrib>Jin, Feng-Jie</creatorcontrib><title>Identification and characterization of a DevR-interacting protein in Aspergillus oryzae</title><title>Fungal biology</title><addtitle>Fungal Biol</addtitle><description>The basic helix-loop-helix (bHLH) proteins belong to a superfamily of transcription factors. Recent research has shown that the bHLH transcription factor DevR is involved in both sexual and asexual development as well as conidial melanin production in Aspergillus species. Our previous research also found that DevR significantly influences polysaccharide metabolism in Aspergillus oryzae. In this study, to further explore the function of DevR, its interaction proteins were screened by a yeast two-hybrid assay. An A. oryzae cDNA library was transformed into the Y187 strain by using the SMART technique and the homologous recombination method, and then hybridized with a constructed DevR bait plasmid introducing strain to obtain positive clones. Through sequencing analysis, the potential interaction proteins of DevR were determined. Among them, an AO090701000363 gene-encoding protein (named DipA), which was predicted to be a basic leucine zipper (bZIP) transcription factor, was a possible candidate. Phenotypic analysis indicated that overexpression of the AodipA may significantly suppress growth of the strain. Additionally, although no obvious change in the growth rate was found, the deletion of AodipA resulted in thicker hyphae morphology relative to the control. Comparative proteomic analysis further indicated that DipA was potentially involved in the regulation of cell wall integrity, carbon utilization, acetate catabolic process and other biological processes. Partial similarity of the phenotype to that of DevR suggested a correlation between them and implied that the DipA has a function partially similar to that of DevR.
•Yeast two-hybrid screening of proteins interacting with DevR.•A potential candidate, bZIP transcription factor, was identified.•Overexpression of the candidate gene inhibits growth of the strain.•The phenotype of deletion and overexpression of the gene was similar to that of DevR.</description><subject>Aspergillus oryzae</subject><subject>Aspergillus oryzae - genetics</subject><subject>Aspergillus oryzae - growth & development</subject><subject>Aspergillus oryzae - metabolism</subject><subject>Carbohydrate Metabolism</subject><subject>Cell Wall - metabolism</subject><subject>DNA-Binding Proteins - chemistry</subject><subject>DNA-Binding Proteins - genetics</subject><subject>DNA-Binding Proteins - metabolism</subject><subject>Fungal Proteins - chemistry</subject><subject>Fungal Proteins - genetics</subject><subject>Fungal Proteins - metabolism</subject><subject>Genes, Fungal</subject><subject>Helix-Loop-Helix Motifs - genetics</subject><subject>Hyphae - growth & development</subject><subject>Phenotype</subject><subject>Protein–protein interaction</subject><subject>Spores, Fungal - growth & development</subject><subject>Transcription factor</subject><subject>Transcription Factors - chemistry</subject><subject>Transcription Factors - genetics</subject><subject>Transcription Factors - metabolism</subject><subject>Two-Hybrid System Techniques</subject><subject>Yeast two-hybrid assay</subject><issn>1878-6146</issn><issn>1878-6162</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kE1LxDAQQIMoKqv_QKRHL62ZtE3jRRA_FwRBFI8hTSZrlm66Ju3C-uuNVD0aAgkzbzKZR8gJ0AIo8PNlYUffur5glNGCQkEp7JBDEI3IOXC2-3ev-AE5jnFJ0yqhFBfNPjkoGWO0bPgheZsb9IOzTqvB9T5T3mT6XQWlBwzucwr2NlPZDW6ec-dTOOWcX2Tr0A_ofJb2VVxjWLiuG2PWh-2nwiOyZ1UX8fjnnJHXu9uX64f88el-fn31mOuKiSG3bWnRcGZq1rK2akVVWahFKWpqEsBqqo0RXNgGQFhApWqqgGHLaQ3WQjkjZ9O76TcfI8ZBrlzU2HXKYz9GyUpRMeCUNwmtJlSHPsaAVq6DW6mwlUDlt1W5lJNV-W1VUpDJaio7_ekwtis0f0W_DhNwOQGY5tw4DDJqh16jcQH1IE3v_u_wBU_BisE</recordid><startdate>202003</startdate><enddate>202003</enddate><creator>Zhang, Zhi-Min</creator><creator>Zhuang, Miao</creator><creator>Wang, Bao-Teng</creator><creator>Jin, Long</creator><creator>Jin, Feng-Jie</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-0376-0964</orcidid></search><sort><creationdate>202003</creationdate><title>Identification and characterization of a DevR-interacting protein in Aspergillus oryzae</title><author>Zhang, Zhi-Min ; Zhuang, Miao ; Wang, Bao-Teng ; Jin, Long ; Jin, Feng-Jie</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c428t-fb3fed62d52b2b4b844f1583850d428250cdd868f7118f1eaa50a12eb6051ff13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Aspergillus oryzae</topic><topic>Aspergillus oryzae - genetics</topic><topic>Aspergillus oryzae - growth & development</topic><topic>Aspergillus oryzae - metabolism</topic><topic>Carbohydrate Metabolism</topic><topic>Cell Wall - metabolism</topic><topic>DNA-Binding Proteins - chemistry</topic><topic>DNA-Binding Proteins - genetics</topic><topic>DNA-Binding Proteins - metabolism</topic><topic>Fungal Proteins - chemistry</topic><topic>Fungal Proteins - genetics</topic><topic>Fungal Proteins - metabolism</topic><topic>Genes, Fungal</topic><topic>Helix-Loop-Helix Motifs - genetics</topic><topic>Hyphae - growth & development</topic><topic>Phenotype</topic><topic>Protein–protein interaction</topic><topic>Spores, Fungal - growth & development</topic><topic>Transcription factor</topic><topic>Transcription Factors - chemistry</topic><topic>Transcription Factors - genetics</topic><topic>Transcription Factors - metabolism</topic><topic>Two-Hybrid System Techniques</topic><topic>Yeast two-hybrid assay</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Zhi-Min</creatorcontrib><creatorcontrib>Zhuang, Miao</creatorcontrib><creatorcontrib>Wang, Bao-Teng</creatorcontrib><creatorcontrib>Jin, Long</creatorcontrib><creatorcontrib>Jin, Feng-Jie</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Fungal biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Zhi-Min</au><au>Zhuang, Miao</au><au>Wang, Bao-Teng</au><au>Jin, Long</au><au>Jin, Feng-Jie</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Identification and characterization of a DevR-interacting protein in Aspergillus oryzae</atitle><jtitle>Fungal biology</jtitle><addtitle>Fungal Biol</addtitle><date>2020-03</date><risdate>2020</risdate><volume>124</volume><issue>3-4</issue><spage>155</spage><epage>163</epage><pages>155-163</pages><issn>1878-6146</issn><eissn>1878-6162</eissn><abstract>The basic helix-loop-helix (bHLH) proteins belong to a superfamily of transcription factors. Recent research has shown that the bHLH transcription factor DevR is involved in both sexual and asexual development as well as conidial melanin production in Aspergillus species. Our previous research also found that DevR significantly influences polysaccharide metabolism in Aspergillus oryzae. In this study, to further explore the function of DevR, its interaction proteins were screened by a yeast two-hybrid assay. An A. oryzae cDNA library was transformed into the Y187 strain by using the SMART technique and the homologous recombination method, and then hybridized with a constructed DevR bait plasmid introducing strain to obtain positive clones. Through sequencing analysis, the potential interaction proteins of DevR were determined. Among them, an AO090701000363 gene-encoding protein (named DipA), which was predicted to be a basic leucine zipper (bZIP) transcription factor, was a possible candidate. Phenotypic analysis indicated that overexpression of the AodipA may significantly suppress growth of the strain. Additionally, although no obvious change in the growth rate was found, the deletion of AodipA resulted in thicker hyphae morphology relative to the control. Comparative proteomic analysis further indicated that DipA was potentially involved in the regulation of cell wall integrity, carbon utilization, acetate catabolic process and other biological processes. Partial similarity of the phenotype to that of DevR suggested a correlation between them and implied that the DipA has a function partially similar to that of DevR.
•Yeast two-hybrid screening of proteins interacting with DevR.•A potential candidate, bZIP transcription factor, was identified.•Overexpression of the candidate gene inhibits growth of the strain.•The phenotype of deletion and overexpression of the gene was similar to that of DevR.</abstract><cop>Netherlands</cop><pub>Elsevier Ltd</pub><pmid>32220376</pmid><doi>10.1016/j.funbio.2020.01.001</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0003-0376-0964</orcidid></addata></record> |
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subjects | Aspergillus oryzae Aspergillus oryzae - genetics Aspergillus oryzae - growth & development Aspergillus oryzae - metabolism Carbohydrate Metabolism Cell Wall - metabolism DNA-Binding Proteins - chemistry DNA-Binding Proteins - genetics DNA-Binding Proteins - metabolism Fungal Proteins - chemistry Fungal Proteins - genetics Fungal Proteins - metabolism Genes, Fungal Helix-Loop-Helix Motifs - genetics Hyphae - growth & development Phenotype Protein–protein interaction Spores, Fungal - growth & development Transcription factor Transcription Factors - chemistry Transcription Factors - genetics Transcription Factors - metabolism Two-Hybrid System Techniques Yeast two-hybrid assay |
title | Identification and characterization of a DevR-interacting protein in Aspergillus oryzae |
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