Evaluation of genetic richness among Vietnamese native pig breeds using microsatellite markers
We have elucidated genetic relationships of Vietnamese native pigs (VNP) using preliminarily collected samples by a single‐nucleotide polymorphism (SNP) array. In order to confirm our previous results and compare with the results of a previous study using microsatellite (MS) markers, we aimed to cha...
Gespeichert in:
| Veröffentlicht in: | Animal science journal 2020-01, Vol.91 (1), p.e13343-n/a |
|---|---|
| Hauptverfasser: | , , , , , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | n/a |
|---|---|
| container_issue | 1 |
| container_start_page | e13343 |
| container_title | Animal science journal |
| container_volume | 91 |
| creator | Ba, Nguyen V. Arakawa, Aisaku Ishihara, Shinya Nam, Le Q. Thuy, Tran T. T. Dinh, Nguyen C. Ninh, Pham H. Cuc, Ngo T. K. Kikuchi, Kazuhiro Pham, Lan D. Taniguchi, Masaaki |
| description | We have elucidated genetic relationships of Vietnamese native pigs (VNP) using preliminarily collected samples by a single‐nucleotide polymorphism (SNP) array. In order to confirm our previous results and compare with the results of a previous study using microsatellite (MS) markers, we aimed to characterize genetic diversity and population structure in wider varieties (24 breeds from 21 Provinces) of VNP across the country using 20 polymorphic MS markers recommended by ISAG/FAO (International Society for Animal Genetics/Food and Agriculture Organization) for diversity study. In this study, we collected 1,136 DNA samples of the VNPs and three exotic breeds. Our results revealed that the average number of alleles and allelic richness across the loci in VNPs were 10.0 and 7.6, which were higher than those of exotic breeds. Genomic components among VNPs were subjected to the sampling locations. Interestingly, Co Binh Thuan showed remarkable genetic feature compared to the other VNPs, because the habitation of Co Binh Thuan was relatively far from the other breeds. The results of this study provided useful information for exploitation, conservation, and development trends of the VNP breeds. More recently, African swine fever caused significant damage to most of the VNP populations. Therefore, our findings will help a reconstruction scheme of the VNP genetic resources. |
| doi_str_mv | 10.1111/asj.13343 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2384207750</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2473378269</sourcerecordid><originalsourceid>FETCH-LOGICAL-c4873-78377f77b58b484d400e51ec1f320dd09c6b752cd88f03a5029014256d994c9d3</originalsourceid><addsrcrecordid>eNp10LlOAzEQBmALgbgLXgBZooFiic94XSLEKSQKjhLL650NDnsEezeIt8chgQIJN-Pi06-ZH6EDSk5peiMbp6eUc8HX0DZVgmREM72e_lyIjGtBt9BOjFNCqNJEbqItzhjVWopt9HIxt_Vge9-1uKvwBFrovcPBu9cWYsS26doJfvbQt7aBCLhNdg545ie4CABlxEP0iTTehS7aHura94AbG94gxD20Udk6wv5q7qKny4vH8-vs7v7q5vzsLnMiVzxTOVeqUqqQeSFyUQpCQFJwtOKMlCXRblwoyVyZ5xXhVhKmCRVMjkuthdMl30XHy9xZ6N4HiL1pfHRpF9tCN0TDeC4YUUqSRI_-0Gk3hDZtZ5hQnKucjXVSJ0u1uCoGqMws-HTUp6HELEo3qXTzXXqyh6vEoWig_JU_LScwWoIPX8Pn_0nm7OF2GfkFf6GKnQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2473378269</pqid></control><display><type>article</type><title>Evaluation of genetic richness among Vietnamese native pig breeds using microsatellite markers</title><source>MEDLINE</source><source>Access via Wiley Online Library</source><source>Alma/SFX Local Collection</source><creator>Ba, Nguyen V. ; Arakawa, Aisaku ; Ishihara, Shinya ; Nam, Le Q. ; Thuy, Tran T. T. ; Dinh, Nguyen C. ; Ninh, Pham H. ; Cuc, Ngo T. K. ; Kikuchi, Kazuhiro ; Pham, Lan D. ; Taniguchi, Masaaki</creator><creatorcontrib>Ba, Nguyen V. ; Arakawa, Aisaku ; Ishihara, Shinya ; Nam, Le Q. ; Thuy, Tran T. T. ; Dinh, Nguyen C. ; Ninh, Pham H. ; Cuc, Ngo T. K. ; Kikuchi, Kazuhiro ; Pham, Lan D. ; Taniguchi, Masaaki</creatorcontrib><description>We have elucidated genetic relationships of Vietnamese native pigs (VNP) using preliminarily collected samples by a single‐nucleotide polymorphism (SNP) array. In order to confirm our previous results and compare with the results of a previous study using microsatellite (MS) markers, we aimed to characterize genetic diversity and population structure in wider varieties (24 breeds from 21 Provinces) of VNP across the country using 20 polymorphic MS markers recommended by ISAG/FAO (International Society for Animal Genetics/Food and Agriculture Organization) for diversity study. In this study, we collected 1,136 DNA samples of the VNPs and three exotic breeds. Our results revealed that the average number of alleles and allelic richness across the loci in VNPs were 10.0 and 7.6, which were higher than those of exotic breeds. Genomic components among VNPs were subjected to the sampling locations. Interestingly, Co Binh Thuan showed remarkable genetic feature compared to the other VNPs, because the habitation of Co Binh Thuan was relatively far from the other breeds. The results of this study provided useful information for exploitation, conservation, and development trends of the VNP breeds. More recently, African swine fever caused significant damage to most of the VNP populations. Therefore, our findings will help a reconstruction scheme of the VNP genetic resources.</description><identifier>ISSN: 1344-3941</identifier><identifier>EISSN: 1740-0929</identifier><identifier>DOI: 10.1111/asj.13343</identifier><identifier>PMID: 32219954</identifier><language>eng</language><publisher>Australia: Blackwell Publishing Ltd</publisher><subject>African swine fever ; Alleles ; Animals ; Breeding ; Deoxyribonucleic acid ; DNA ; Exploitation ; Genetic diversity ; Genetic markers ; Genetic relationship ; Genetic resources ; Genetic Variation ; Genetics ; Hogs ; Livestock ; Markers ; microsatellite marker ; Microsatellite Repeats ; Microsatellites ; Nucleotides ; phylogenetic analysis ; pig ; Polymorphism ; Polymorphism, Single Nucleotide ; Population genetics ; Population structure ; Single-nucleotide polymorphism ; Swine ; Swine - genetics ; Vietnam</subject><ispartof>Animal science journal, 2020-01, Vol.91 (1), p.e13343-n/a</ispartof><rights>2020 Japanese Society of Animal Science</rights><rights>2020 Japanese Society of Animal Science.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4873-78377f77b58b484d400e51ec1f320dd09c6b752cd88f03a5029014256d994c9d3</citedby><cites>FETCH-LOGICAL-c4873-78377f77b58b484d400e51ec1f320dd09c6b752cd88f03a5029014256d994c9d3</cites><orcidid>0000-0001-8194-3577 ; 0000-0002-7198-9237</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fasj.13343$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fasj.13343$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32219954$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ba, Nguyen V.</creatorcontrib><creatorcontrib>Arakawa, Aisaku</creatorcontrib><creatorcontrib>Ishihara, Shinya</creatorcontrib><creatorcontrib>Nam, Le Q.</creatorcontrib><creatorcontrib>Thuy, Tran T. T.</creatorcontrib><creatorcontrib>Dinh, Nguyen C.</creatorcontrib><creatorcontrib>Ninh, Pham H.</creatorcontrib><creatorcontrib>Cuc, Ngo T. K.</creatorcontrib><creatorcontrib>Kikuchi, Kazuhiro</creatorcontrib><creatorcontrib>Pham, Lan D.</creatorcontrib><creatorcontrib>Taniguchi, Masaaki</creatorcontrib><title>Evaluation of genetic richness among Vietnamese native pig breeds using microsatellite markers</title><title>Animal science journal</title><addtitle>Anim Sci J</addtitle><description>We have elucidated genetic relationships of Vietnamese native pigs (VNP) using preliminarily collected samples by a single‐nucleotide polymorphism (SNP) array. In order to confirm our previous results and compare with the results of a previous study using microsatellite (MS) markers, we aimed to characterize genetic diversity and population structure in wider varieties (24 breeds from 21 Provinces) of VNP across the country using 20 polymorphic MS markers recommended by ISAG/FAO (International Society for Animal Genetics/Food and Agriculture Organization) for diversity study. In this study, we collected 1,136 DNA samples of the VNPs and three exotic breeds. Our results revealed that the average number of alleles and allelic richness across the loci in VNPs were 10.0 and 7.6, which were higher than those of exotic breeds. Genomic components among VNPs were subjected to the sampling locations. Interestingly, Co Binh Thuan showed remarkable genetic feature compared to the other VNPs, because the habitation of Co Binh Thuan was relatively far from the other breeds. The results of this study provided useful information for exploitation, conservation, and development trends of the VNP breeds. More recently, African swine fever caused significant damage to most of the VNP populations. Therefore, our findings will help a reconstruction scheme of the VNP genetic resources.</description><subject>African swine fever</subject><subject>Alleles</subject><subject>Animals</subject><subject>Breeding</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Exploitation</subject><subject>Genetic diversity</subject><subject>Genetic markers</subject><subject>Genetic relationship</subject><subject>Genetic resources</subject><subject>Genetic Variation</subject><subject>Genetics</subject><subject>Hogs</subject><subject>Livestock</subject><subject>Markers</subject><subject>microsatellite marker</subject><subject>Microsatellite Repeats</subject><subject>Microsatellites</subject><subject>Nucleotides</subject><subject>phylogenetic analysis</subject><subject>pig</subject><subject>Polymorphism</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Population genetics</subject><subject>Population structure</subject><subject>Single-nucleotide polymorphism</subject><subject>Swine</subject><subject>Swine - genetics</subject><subject>Vietnam</subject><issn>1344-3941</issn><issn>1740-0929</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp10LlOAzEQBmALgbgLXgBZooFiic94XSLEKSQKjhLL650NDnsEezeIt8chgQIJN-Pi06-ZH6EDSk5peiMbp6eUc8HX0DZVgmREM72e_lyIjGtBt9BOjFNCqNJEbqItzhjVWopt9HIxt_Vge9-1uKvwBFrovcPBu9cWYsS26doJfvbQt7aBCLhNdg545ie4CABlxEP0iTTehS7aHura94AbG94gxD20Udk6wv5q7qKny4vH8-vs7v7q5vzsLnMiVzxTOVeqUqqQeSFyUQpCQFJwtOKMlCXRblwoyVyZ5xXhVhKmCRVMjkuthdMl30XHy9xZ6N4HiL1pfHRpF9tCN0TDeC4YUUqSRI_-0Gk3hDZtZ5hQnKucjXVSJ0u1uCoGqMws-HTUp6HELEo3qXTzXXqyh6vEoWig_JU_LScwWoIPX8Pn_0nm7OF2GfkFf6GKnQ</recordid><startdate>202001</startdate><enddate>202001</enddate><creator>Ba, Nguyen V.</creator><creator>Arakawa, Aisaku</creator><creator>Ishihara, Shinya</creator><creator>Nam, Le Q.</creator><creator>Thuy, Tran T. T.</creator><creator>Dinh, Nguyen C.</creator><creator>Ninh, Pham H.</creator><creator>Cuc, Ngo T. K.</creator><creator>Kikuchi, Kazuhiro</creator><creator>Pham, Lan D.</creator><creator>Taniguchi, Masaaki</creator><general>Blackwell Publishing Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-8194-3577</orcidid><orcidid>https://orcid.org/0000-0002-7198-9237</orcidid></search><sort><creationdate>202001</creationdate><title>Evaluation of genetic richness among Vietnamese native pig breeds using microsatellite markers</title><author>Ba, Nguyen V. ; Arakawa, Aisaku ; Ishihara, Shinya ; Nam, Le Q. ; Thuy, Tran T. T. ; Dinh, Nguyen C. ; Ninh, Pham H. ; Cuc, Ngo T. K. ; Kikuchi, Kazuhiro ; Pham, Lan D. ; Taniguchi, Masaaki</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4873-78377f77b58b484d400e51ec1f320dd09c6b752cd88f03a5029014256d994c9d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>African swine fever</topic><topic>Alleles</topic><topic>Animals</topic><topic>Breeding</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Exploitation</topic><topic>Genetic diversity</topic><topic>Genetic markers</topic><topic>Genetic relationship</topic><topic>Genetic resources</topic><topic>Genetic Variation</topic><topic>Genetics</topic><topic>Hogs</topic><topic>Livestock</topic><topic>Markers</topic><topic>microsatellite marker</topic><topic>Microsatellite Repeats</topic><topic>Microsatellites</topic><topic>Nucleotides</topic><topic>phylogenetic analysis</topic><topic>pig</topic><topic>Polymorphism</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Population genetics</topic><topic>Population structure</topic><topic>Single-nucleotide polymorphism</topic><topic>Swine</topic><topic>Swine - genetics</topic><topic>Vietnam</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ba, Nguyen V.</creatorcontrib><creatorcontrib>Arakawa, Aisaku</creatorcontrib><creatorcontrib>Ishihara, Shinya</creatorcontrib><creatorcontrib>Nam, Le Q.</creatorcontrib><creatorcontrib>Thuy, Tran T. T.</creatorcontrib><creatorcontrib>Dinh, Nguyen C.</creatorcontrib><creatorcontrib>Ninh, Pham H.</creatorcontrib><creatorcontrib>Cuc, Ngo T. K.</creatorcontrib><creatorcontrib>Kikuchi, Kazuhiro</creatorcontrib><creatorcontrib>Pham, Lan D.</creatorcontrib><creatorcontrib>Taniguchi, Masaaki</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Animal science journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ba, Nguyen V.</au><au>Arakawa, Aisaku</au><au>Ishihara, Shinya</au><au>Nam, Le Q.</au><au>Thuy, Tran T. T.</au><au>Dinh, Nguyen C.</au><au>Ninh, Pham H.</au><au>Cuc, Ngo T. K.</au><au>Kikuchi, Kazuhiro</au><au>Pham, Lan D.</au><au>Taniguchi, Masaaki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evaluation of genetic richness among Vietnamese native pig breeds using microsatellite markers</atitle><jtitle>Animal science journal</jtitle><addtitle>Anim Sci J</addtitle><date>2020-01</date><risdate>2020</risdate><volume>91</volume><issue>1</issue><spage>e13343</spage><epage>n/a</epage><pages>e13343-n/a</pages><issn>1344-3941</issn><eissn>1740-0929</eissn><abstract>We have elucidated genetic relationships of Vietnamese native pigs (VNP) using preliminarily collected samples by a single‐nucleotide polymorphism (SNP) array. In order to confirm our previous results and compare with the results of a previous study using microsatellite (MS) markers, we aimed to characterize genetic diversity and population structure in wider varieties (24 breeds from 21 Provinces) of VNP across the country using 20 polymorphic MS markers recommended by ISAG/FAO (International Society for Animal Genetics/Food and Agriculture Organization) for diversity study. In this study, we collected 1,136 DNA samples of the VNPs and three exotic breeds. Our results revealed that the average number of alleles and allelic richness across the loci in VNPs were 10.0 and 7.6, which were higher than those of exotic breeds. Genomic components among VNPs were subjected to the sampling locations. Interestingly, Co Binh Thuan showed remarkable genetic feature compared to the other VNPs, because the habitation of Co Binh Thuan was relatively far from the other breeds. The results of this study provided useful information for exploitation, conservation, and development trends of the VNP breeds. More recently, African swine fever caused significant damage to most of the VNP populations. Therefore, our findings will help a reconstruction scheme of the VNP genetic resources.</abstract><cop>Australia</cop><pub>Blackwell Publishing Ltd</pub><pmid>32219954</pmid><doi>10.1111/asj.13343</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0001-8194-3577</orcidid><orcidid>https://orcid.org/0000-0002-7198-9237</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1344-3941 |
| ispartof | Animal science journal, 2020-01, Vol.91 (1), p.e13343-n/a |
| issn | 1344-3941 1740-0929 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2384207750 |
| source | MEDLINE; Access via Wiley Online Library; Alma/SFX Local Collection |
| subjects | African swine fever Alleles Animals Breeding Deoxyribonucleic acid DNA Exploitation Genetic diversity Genetic markers Genetic relationship Genetic resources Genetic Variation Genetics Hogs Livestock Markers microsatellite marker Microsatellite Repeats Microsatellites Nucleotides phylogenetic analysis pig Polymorphism Polymorphism, Single Nucleotide Population genetics Population structure Single-nucleotide polymorphism Swine Swine - genetics Vietnam |
| title | Evaluation of genetic richness among Vietnamese native pig breeds using microsatellite markers |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-21T01%3A58%3A36IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Evaluation%20of%20genetic%20richness%20among%20Vietnamese%20native%20pig%20breeds%20using%20microsatellite%20markers&rft.jtitle=Animal%20science%20journal&rft.au=Ba,%20Nguyen%20V.&rft.date=2020-01&rft.volume=91&rft.issue=1&rft.spage=e13343&rft.epage=n/a&rft.pages=e13343-n/a&rft.issn=1344-3941&rft.eissn=1740-0929&rft_id=info:doi/10.1111/asj.13343&rft_dat=%3Cproquest_cross%3E2473378269%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2473378269&rft_id=info:pmid/32219954&rfr_iscdi=true |