Dynamics of Replication and Nuclear Localization of the B Chromosome in Kidney Tissue Cells in Astyanax scabripinnis (Teleostei: Characidae)
B chromosomes are extra genomic compounds found in different taxonomic groups, including plants and animals. Obtaining patterns of resolutive chromosomal bands is necessary to understand the nuclear organization, variability and nature of B chromosome chromatin and possible transcriptional regions....
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Veröffentlicht in: | Zebrafish 2020-04, Vol.17 (2), p.147-152 |
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description | B chromosomes are extra genomic compounds found in different taxonomic groups, including plants and animals. Obtaining patterns of resolutive chromosomal bands is necessary to understand the nuclear organization, variability and nature of B chromosome chromatin and possible transcriptional regions. In this study, we analyzed 35
Astyanax scabripinnis
specimens sampled from Fazenda Lavrinha, a stream in the Paraíba do Sul river basin, Brazil. Through the incorporation of the thymidine analog 5′-bromo-2′-deoxyuridine (5-BrdU)
in vivo
, it was possible to recognize the replicating regions of the B chromosome at the beginning of the S phase, differentially characterized in relationship to the regions of late replication. In this perspective, it is possible to suggest that the B chromosome of this species possesses a territory and the chromatin accessible for transcription, especially in the light (i.e., early replicating) bands (p1.1; p1.3; and p2.1 and q1.1, q1.3, q2.1, and q2.2). The late-replicating regions are corresponding to the blocks of constitutive heterochromatin. They show a preferential accumulation of satellite DNA
As
51. By the use of the fluorochrome chromomycin A3 (CMA3), it was possible to identify GC-rich chromosomal regions, corresponding to late-replicating parts of genome, confirming the revealed data by the replication banding and C-banding. In addition, the analysis by confocal microscopy in kidney cells indicates the location of a peripheral anchorage of this chromosome in the nuclear lamina, reinforcing the idea of downregulation of the associated regions. |
doi_str_mv | 10.1089/zeb.2019.1756 |
format | Article |
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Astyanax scabripinnis
specimens sampled from Fazenda Lavrinha, a stream in the Paraíba do Sul river basin, Brazil. Through the incorporation of the thymidine analog 5′-bromo-2′-deoxyuridine (5-BrdU)
in vivo
, it was possible to recognize the replicating regions of the B chromosome at the beginning of the S phase, differentially characterized in relationship to the regions of late replication. In this perspective, it is possible to suggest that the B chromosome of this species possesses a territory and the chromatin accessible for transcription, especially in the light (i.e., early replicating) bands (p1.1; p1.3; and p2.1 and q1.1, q1.3, q2.1, and q2.2). The late-replicating regions are corresponding to the blocks of constitutive heterochromatin. They show a preferential accumulation of satellite DNA
As
51. By the use of the fluorochrome chromomycin A3 (CMA3), it was possible to identify GC-rich chromosomal regions, corresponding to late-replicating parts of genome, confirming the revealed data by the replication banding and C-banding. In addition, the analysis by confocal microscopy in kidney cells indicates the location of a peripheral anchorage of this chromosome in the nuclear lamina, reinforcing the idea of downregulation of the associated regions.</description><identifier>ISSN: 1545-8547</identifier><identifier>EISSN: 1557-8542</identifier><identifier>DOI: 10.1089/zeb.2019.1756</identifier><identifier>PMID: 32159463</identifier><language>eng</language><publisher>United States: Mary Ann Liebert, Inc., publishers</publisher><subject>Analogs ; Animals ; Astyanax scabripinnis ; B chromosome ; Brazil ; Cells ; Characidae - genetics ; Chromatin ; Chromatin - physiology ; Chromosomes ; Chromosomes - genetics ; Chromosomes - physiology ; Confocal microscopy ; Deoxyribonucleic acid ; DNA ; DNA Replication Timing ; Evo Fish ; Genomes ; Heterochromatin ; Interphase ; Kidney - physiology ; Kidneys ; Localization ; Microscopy ; Regions ; Replication ; River basins ; Rivers ; S phase ; Satellite DNA ; Thymidine ; Transcription ; Transcription, Genetic</subject><ispartof>Zebrafish, 2020-04, Vol.17 (2), p.147-152</ispartof><rights>2020, Mary Ann Liebert, Inc., publishers</rights><rights>Copyright Mary Ann Liebert, Inc. Apr 2020</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c365t-2830a2c0c47d58f4ff8ac542598aaeca350dbedaff08438d2ae1f2eae25e13c13</citedby><cites>FETCH-LOGICAL-c365t-2830a2c0c47d58f4ff8ac542598aaeca350dbedaff08438d2ae1f2eae25e13c13</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27922,27923</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32159463$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Schemczssen-Graeff, Zelinda</creatorcontrib><creatorcontrib>Barbosa, Patrícia</creatorcontrib><creatorcontrib>Castro, Jonathan Pena</creatorcontrib><creatorcontrib>Silva, Maelin da</creatorcontrib><creatorcontrib>Almeida, Mara Cristina de</creatorcontrib><creatorcontrib>Moreira-Filho, Orlando</creatorcontrib><creatorcontrib>Artoni, Roberto Ferreira</creatorcontrib><title>Dynamics of Replication and Nuclear Localization of the B Chromosome in Kidney Tissue Cells in Astyanax scabripinnis (Teleostei: Characidae)</title><title>Zebrafish</title><addtitle>Zebrafish</addtitle><description>B chromosomes are extra genomic compounds found in different taxonomic groups, including plants and animals. Obtaining patterns of resolutive chromosomal bands is necessary to understand the nuclear organization, variability and nature of B chromosome chromatin and possible transcriptional regions. In this study, we analyzed 35
Astyanax scabripinnis
specimens sampled from Fazenda Lavrinha, a stream in the Paraíba do Sul river basin, Brazil. Through the incorporation of the thymidine analog 5′-bromo-2′-deoxyuridine (5-BrdU)
in vivo
, it was possible to recognize the replicating regions of the B chromosome at the beginning of the S phase, differentially characterized in relationship to the regions of late replication. In this perspective, it is possible to suggest that the B chromosome of this species possesses a territory and the chromatin accessible for transcription, especially in the light (i.e., early replicating) bands (p1.1; p1.3; and p2.1 and q1.1, q1.3, q2.1, and q2.2). The late-replicating regions are corresponding to the blocks of constitutive heterochromatin. They show a preferential accumulation of satellite DNA
As
51. By the use of the fluorochrome chromomycin A3 (CMA3), it was possible to identify GC-rich chromosomal regions, corresponding to late-replicating parts of genome, confirming the revealed data by the replication banding and C-banding. In addition, the analysis by confocal microscopy in kidney cells indicates the location of a peripheral anchorage of this chromosome in the nuclear lamina, reinforcing the idea of downregulation of the associated regions.</description><subject>Analogs</subject><subject>Animals</subject><subject>Astyanax scabripinnis</subject><subject>B chromosome</subject><subject>Brazil</subject><subject>Cells</subject><subject>Characidae - genetics</subject><subject>Chromatin</subject><subject>Chromatin - physiology</subject><subject>Chromosomes</subject><subject>Chromosomes - genetics</subject><subject>Chromosomes - physiology</subject><subject>Confocal microscopy</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA Replication Timing</subject><subject>Evo Fish</subject><subject>Genomes</subject><subject>Heterochromatin</subject><subject>Interphase</subject><subject>Kidney - physiology</subject><subject>Kidneys</subject><subject>Localization</subject><subject>Microscopy</subject><subject>Regions</subject><subject>Replication</subject><subject>River basins</subject><subject>Rivers</subject><subject>S phase</subject><subject>Satellite DNA</subject><subject>Thymidine</subject><subject>Transcription</subject><subject>Transcription, Genetic</subject><issn>1545-8547</issn><issn>1557-8542</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1v1DAQhi0Eou3CkSuyxKU9ZPHnxuHWLp9iBRJaztHEGauuEnuxE4ntb-BH42gLBy6cZjTz6NXYDyEvOFtzZprX99itBePNmtd684icc63rymglHi-90ktfn5GLnO8Yk7KR6ik5k4LrRm3kOfn19hhg9DbT6Og3PAzewuRjoBB6-mW2A0Kiu2hh8PenReGmW6Q3dHub4hhzHJH6QD_7PuCR7n3OM9ItDkNextd5OkKAnzRb6JI_-BB8ppd7HDDmCf2bEgMJrO8Br56RJw6GjM8f6op8f_9uv_1Y7b5--LS93lVWbvRUCSMZCMusqnttnHLOgC0v1o0BQAtSs77DHpxjRknTC0DuBAIKjVxaLlfk8pR7SPHHjHlqR59tORkCxjm3QtYbIRVTdUFf_YPexTmFcl2hjBLc6PKnK1KdKJtizglde0h-hHRsOWsXTW3R1C6a2kVT4V8-pM7diP1f-o-XAsgTsIwhhMFjh2n6T-xv9Suglw</recordid><startdate>20200401</startdate><enddate>20200401</enddate><creator>Schemczssen-Graeff, Zelinda</creator><creator>Barbosa, Patrícia</creator><creator>Castro, Jonathan Pena</creator><creator>Silva, Maelin da</creator><creator>Almeida, Mara Cristina de</creator><creator>Moreira-Filho, Orlando</creator><creator>Artoni, Roberto Ferreira</creator><general>Mary Ann Liebert, Inc., publishers</general><general>Mary Ann Liebert, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7T5</scope><scope>7TM</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H94</scope><scope>H95</scope><scope>H98</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20200401</creationdate><title>Dynamics of Replication and Nuclear Localization of the B Chromosome in Kidney Tissue Cells in Astyanax scabripinnis (Teleostei: Characidae)</title><author>Schemczssen-Graeff, Zelinda ; Barbosa, Patrícia ; Castro, Jonathan Pena ; Silva, Maelin da ; Almeida, Mara Cristina de ; Moreira-Filho, Orlando ; Artoni, Roberto Ferreira</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c365t-2830a2c0c47d58f4ff8ac542598aaeca350dbedaff08438d2ae1f2eae25e13c13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Analogs</topic><topic>Animals</topic><topic>Astyanax scabripinnis</topic><topic>B chromosome</topic><topic>Brazil</topic><topic>Cells</topic><topic>Characidae - genetics</topic><topic>Chromatin</topic><topic>Chromatin - physiology</topic><topic>Chromosomes</topic><topic>Chromosomes - genetics</topic><topic>Chromosomes - physiology</topic><topic>Confocal microscopy</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA Replication Timing</topic><topic>Evo Fish</topic><topic>Genomes</topic><topic>Heterochromatin</topic><topic>Interphase</topic><topic>Kidney - physiology</topic><topic>Kidneys</topic><topic>Localization</topic><topic>Microscopy</topic><topic>Regions</topic><topic>Replication</topic><topic>River basins</topic><topic>Rivers</topic><topic>S phase</topic><topic>Satellite DNA</topic><topic>Thymidine</topic><topic>Transcription</topic><topic>Transcription, Genetic</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Schemczssen-Graeff, Zelinda</creatorcontrib><creatorcontrib>Barbosa, Patrícia</creatorcontrib><creatorcontrib>Castro, Jonathan Pena</creatorcontrib><creatorcontrib>Silva, Maelin da</creatorcontrib><creatorcontrib>Almeida, Mara Cristina de</creatorcontrib><creatorcontrib>Moreira-Filho, Orlando</creatorcontrib><creatorcontrib>Artoni, Roberto Ferreira</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Immunology Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Aquaculture Abstracts</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Zebrafish</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Schemczssen-Graeff, Zelinda</au><au>Barbosa, Patrícia</au><au>Castro, Jonathan Pena</au><au>Silva, Maelin da</au><au>Almeida, Mara Cristina de</au><au>Moreira-Filho, Orlando</au><au>Artoni, Roberto Ferreira</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Dynamics of Replication and Nuclear Localization of the B Chromosome in Kidney Tissue Cells in Astyanax scabripinnis (Teleostei: Characidae)</atitle><jtitle>Zebrafish</jtitle><addtitle>Zebrafish</addtitle><date>2020-04-01</date><risdate>2020</risdate><volume>17</volume><issue>2</issue><spage>147</spage><epage>152</epage><pages>147-152</pages><issn>1545-8547</issn><eissn>1557-8542</eissn><abstract>B chromosomes are extra genomic compounds found in different taxonomic groups, including plants and animals. Obtaining patterns of resolutive chromosomal bands is necessary to understand the nuclear organization, variability and nature of B chromosome chromatin and possible transcriptional regions. In this study, we analyzed 35
Astyanax scabripinnis
specimens sampled from Fazenda Lavrinha, a stream in the Paraíba do Sul river basin, Brazil. Through the incorporation of the thymidine analog 5′-bromo-2′-deoxyuridine (5-BrdU)
in vivo
, it was possible to recognize the replicating regions of the B chromosome at the beginning of the S phase, differentially characterized in relationship to the regions of late replication. In this perspective, it is possible to suggest that the B chromosome of this species possesses a territory and the chromatin accessible for transcription, especially in the light (i.e., early replicating) bands (p1.1; p1.3; and p2.1 and q1.1, q1.3, q2.1, and q2.2). The late-replicating regions are corresponding to the blocks of constitutive heterochromatin. They show a preferential accumulation of satellite DNA
As
51. By the use of the fluorochrome chromomycin A3 (CMA3), it was possible to identify GC-rich chromosomal regions, corresponding to late-replicating parts of genome, confirming the revealed data by the replication banding and C-banding. In addition, the analysis by confocal microscopy in kidney cells indicates the location of a peripheral anchorage of this chromosome in the nuclear lamina, reinforcing the idea of downregulation of the associated regions.</abstract><cop>United States</cop><pub>Mary Ann Liebert, Inc., publishers</pub><pmid>32159463</pmid><doi>10.1089/zeb.2019.1756</doi><tpages>6</tpages></addata></record> |
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subjects | Analogs Animals Astyanax scabripinnis B chromosome Brazil Cells Characidae - genetics Chromatin Chromatin - physiology Chromosomes Chromosomes - genetics Chromosomes - physiology Confocal microscopy Deoxyribonucleic acid DNA DNA Replication Timing Evo Fish Genomes Heterochromatin Interphase Kidney - physiology Kidneys Localization Microscopy Regions Replication River basins Rivers S phase Satellite DNA Thymidine Transcription Transcription, Genetic |
title | Dynamics of Replication and Nuclear Localization of the B Chromosome in Kidney Tissue Cells in Astyanax scabripinnis (Teleostei: Characidae) |
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