Small‐Molecule Inhibitors of METTL3, the Major Human Epitranscriptomic Writer
The RNA methylase METTL3 catalyzes the transfer of a methyl group from the cofactor S‐adenosyl‐L‐methionine (SAM) to the N6 atom of adenine. We have screened a library of 4000 analogues and derivatives of the adenosine moiety of SAM by high‐throughput docking into METTL3. Two series of adenine deriv...
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Veröffentlicht in: | ChemMedChem 2020-05, Vol.15 (9), p.744-748 |
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creator | Bedi, Rajiv K. Huang, Danzhi Eberle, Stefanie A. Wiedmer, Lars Śledź, Pawel Caflisch, Amedeo |
description | The RNA methylase METTL3 catalyzes the transfer of a methyl group from the cofactor S‐adenosyl‐L‐methionine (SAM) to the N6 atom of adenine. We have screened a library of 4000 analogues and derivatives of the adenosine moiety of SAM by high‐throughput docking into METTL3. Two series of adenine derivatives were identified in silico, and the binding mode of six of the predicted inhibitors was validated by protein crystallography. Two compounds, one for each series, show good ligand efficiency. We propose a route for their further development into potent and selective inhibitors of METTL3.
On your METTL: High‐throughput docking into the SAM‐binding site and protein X‐ray crystallography have allowed us to identify and characterize the first small‐molecule inhibitors of METTL3, the key human epitranscriptomic writer. Two compounds showed good ligand efficiency, and we propose a route for their development into potent, selective METTL3 inhibitors. |
doi_str_mv | 10.1002/cmdc.202000011 |
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On your METTL: High‐throughput docking into the SAM‐binding site and protein X‐ray crystallography have allowed us to identify and characterize the first small‐molecule inhibitors of METTL3, the key human epitranscriptomic writer. Two compounds showed good ligand efficiency, and we propose a route for their development into potent, selective METTL3 inhibitors.</description><identifier>ISSN: 1860-7179</identifier><identifier>EISSN: 1860-7187</identifier><identifier>DOI: 10.1002/cmdc.202000011</identifier><identifier>PMID: 32159918</identifier><language>eng</language><publisher>Germany: Wiley Subscription Services, Inc</publisher><subject>Adenine ; Adenosine ; Crystallography ; Crystallography, X-Ray ; Derivatives ; Docking ; Enzyme Inhibitors - chemical synthesis ; Enzyme Inhibitors - chemistry ; Enzyme Inhibitors - pharmacology ; HTRF ; Humans ; Inhibitors ; m6A ; Methionine ; Methylase ; Methyltransferase ; Methyltransferases - antagonists & inhibitors ; Methyltransferases - metabolism ; METTL3/METTL14 ; Models, Molecular ; Molecular Conformation ; protein crystallography ; Ribonucleic acid ; RNA ; Stereoisomerism</subject><ispartof>ChemMedChem, 2020-05, Vol.15 (9), p.744-748</ispartof><rights>2020 Wiley‐VCH Verlag GmbH & Co. KGaA, Weinheim</rights><rights>2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4841-cb30f07da07e4f67f53479d694bcfedc0cf3622f21e887acd038129822ac15623</citedby><cites>FETCH-LOGICAL-c4841-cb30f07da07e4f67f53479d694bcfedc0cf3622f21e887acd038129822ac15623</cites><orcidid>0000-0002-2317-6792</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fcmdc.202000011$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fcmdc.202000011$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32159918$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bedi, Rajiv K.</creatorcontrib><creatorcontrib>Huang, Danzhi</creatorcontrib><creatorcontrib>Eberle, Stefanie A.</creatorcontrib><creatorcontrib>Wiedmer, Lars</creatorcontrib><creatorcontrib>Śledź, Pawel</creatorcontrib><creatorcontrib>Caflisch, Amedeo</creatorcontrib><title>Small‐Molecule Inhibitors of METTL3, the Major Human Epitranscriptomic Writer</title><title>ChemMedChem</title><addtitle>ChemMedChem</addtitle><description>The RNA methylase METTL3 catalyzes the transfer of a methyl group from the cofactor S‐adenosyl‐L‐methionine (SAM) to the N6 atom of adenine. We have screened a library of 4000 analogues and derivatives of the adenosine moiety of SAM by high‐throughput docking into METTL3. Two series of adenine derivatives were identified in silico, and the binding mode of six of the predicted inhibitors was validated by protein crystallography. Two compounds, one for each series, show good ligand efficiency. We propose a route for their further development into potent and selective inhibitors of METTL3.
On your METTL: High‐throughput docking into the SAM‐binding site and protein X‐ray crystallography have allowed us to identify and characterize the first small‐molecule inhibitors of METTL3, the key human epitranscriptomic writer. Two compounds showed good ligand efficiency, and we propose a route for their development into potent, selective METTL3 inhibitors.</description><subject>Adenine</subject><subject>Adenosine</subject><subject>Crystallography</subject><subject>Crystallography, X-Ray</subject><subject>Derivatives</subject><subject>Docking</subject><subject>Enzyme Inhibitors - chemical synthesis</subject><subject>Enzyme Inhibitors - chemistry</subject><subject>Enzyme Inhibitors - pharmacology</subject><subject>HTRF</subject><subject>Humans</subject><subject>Inhibitors</subject><subject>m6A</subject><subject>Methionine</subject><subject>Methylase</subject><subject>Methyltransferase</subject><subject>Methyltransferases - antagonists & inhibitors</subject><subject>Methyltransferases - metabolism</subject><subject>METTL3/METTL14</subject><subject>Models, Molecular</subject><subject>Molecular Conformation</subject><subject>protein crystallography</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Stereoisomerism</subject><issn>1860-7179</issn><issn>1860-7187</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0L1OwzAUBWALgWgprIwoEgsDKf5r7IwoFFqpVQeKGCPHsVVXSRzsRKgbj8Az8iSkaikSC16uh-8eXR0ALhEcIgjxnSxzOcQQw-4hdAT6iEcwZIiz48OfxT1w5v0aQko54qegRzAaxTHifbB4LkVRfH18zm2hZFuoYFqtTGYa63xgdTAfL5czchs0KxXMxdq6YNKWogrGtWmcqLx0pm5saWTw6kyj3Dk40aLw6mI_B-DlcbxMJuFs8TRN7mehpJyiUGYEashyAZmiOmJ6RCiL8yimmdQql1BqEmGsMVKcMyFzSDjCMcdYSDSKMBmAm11u7exbq3yTlsZLVRSiUrb1KSasU4Qi1tHrP3RtW1d113Uq5pRSxkinhjslnfXeKZ3WzpTCbVIE023V6bbq9FB1t3C1j22zUuUH_tNtB-IdeDeF2vwTlybzh-Q3_BsVs4mJ</recordid><startdate>20200506</startdate><enddate>20200506</enddate><creator>Bedi, Rajiv K.</creator><creator>Huang, Danzhi</creator><creator>Eberle, Stefanie A.</creator><creator>Wiedmer, Lars</creator><creator>Śledź, Pawel</creator><creator>Caflisch, Amedeo</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7TK</scope><scope>7U7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-2317-6792</orcidid></search><sort><creationdate>20200506</creationdate><title>Small‐Molecule Inhibitors of METTL3, the Major Human Epitranscriptomic Writer</title><author>Bedi, Rajiv K. ; Huang, Danzhi ; Eberle, Stefanie A. ; Wiedmer, Lars ; Śledź, Pawel ; Caflisch, Amedeo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4841-cb30f07da07e4f67f53479d694bcfedc0cf3622f21e887acd038129822ac15623</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Adenine</topic><topic>Adenosine</topic><topic>Crystallography</topic><topic>Crystallography, X-Ray</topic><topic>Derivatives</topic><topic>Docking</topic><topic>Enzyme Inhibitors - chemical synthesis</topic><topic>Enzyme Inhibitors - chemistry</topic><topic>Enzyme Inhibitors - pharmacology</topic><topic>HTRF</topic><topic>Humans</topic><topic>Inhibitors</topic><topic>m6A</topic><topic>Methionine</topic><topic>Methylase</topic><topic>Methyltransferase</topic><topic>Methyltransferases - antagonists & inhibitors</topic><topic>Methyltransferases - metabolism</topic><topic>METTL3/METTL14</topic><topic>Models, Molecular</topic><topic>Molecular Conformation</topic><topic>protein crystallography</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>Stereoisomerism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bedi, Rajiv K.</creatorcontrib><creatorcontrib>Huang, Danzhi</creatorcontrib><creatorcontrib>Eberle, Stefanie A.</creatorcontrib><creatorcontrib>Wiedmer, Lars</creatorcontrib><creatorcontrib>Śledź, Pawel</creatorcontrib><creatorcontrib>Caflisch, Amedeo</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Toxicology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>ChemMedChem</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bedi, Rajiv K.</au><au>Huang, Danzhi</au><au>Eberle, Stefanie A.</au><au>Wiedmer, Lars</au><au>Śledź, Pawel</au><au>Caflisch, Amedeo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Small‐Molecule Inhibitors of METTL3, the Major Human Epitranscriptomic Writer</atitle><jtitle>ChemMedChem</jtitle><addtitle>ChemMedChem</addtitle><date>2020-05-06</date><risdate>2020</risdate><volume>15</volume><issue>9</issue><spage>744</spage><epage>748</epage><pages>744-748</pages><issn>1860-7179</issn><eissn>1860-7187</eissn><abstract>The RNA methylase METTL3 catalyzes the transfer of a methyl group from the cofactor S‐adenosyl‐L‐methionine (SAM) to the N6 atom of adenine. We have screened a library of 4000 analogues and derivatives of the adenosine moiety of SAM by high‐throughput docking into METTL3. Two series of adenine derivatives were identified in silico, and the binding mode of six of the predicted inhibitors was validated by protein crystallography. Two compounds, one for each series, show good ligand efficiency. We propose a route for their further development into potent and selective inhibitors of METTL3.
On your METTL: High‐throughput docking into the SAM‐binding site and protein X‐ray crystallography have allowed us to identify and characterize the first small‐molecule inhibitors of METTL3, the key human epitranscriptomic writer. Two compounds showed good ligand efficiency, and we propose a route for their development into potent, selective METTL3 inhibitors.</abstract><cop>Germany</cop><pub>Wiley Subscription Services, Inc</pub><pmid>32159918</pmid><doi>10.1002/cmdc.202000011</doi><tpages>5</tpages><orcidid>https://orcid.org/0000-0002-2317-6792</orcidid></addata></record> |
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subjects | Adenine Adenosine Crystallography Crystallography, X-Ray Derivatives Docking Enzyme Inhibitors - chemical synthesis Enzyme Inhibitors - chemistry Enzyme Inhibitors - pharmacology HTRF Humans Inhibitors m6A Methionine Methylase Methyltransferase Methyltransferases - antagonists & inhibitors Methyltransferases - metabolism METTL3/METTL14 Models, Molecular Molecular Conformation protein crystallography Ribonucleic acid RNA Stereoisomerism |
title | Small‐Molecule Inhibitors of METTL3, the Major Human Epitranscriptomic Writer |
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