Arginine-Enriched Mixed-Charge Domains Provide Cohesion for Nuclear Speckle Condensation
Low-complexity protein domains promote the formation of various biomolecular condensates. However, in many cases, the precise sequence features governing condensate formation and identity remain unclear. Here, we investigate the role of intrinsically disordered mixed-charge domains (MCDs) in nuclear...
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description | Low-complexity protein domains promote the formation of various biomolecular condensates. However, in many cases, the precise sequence features governing condensate formation and identity remain unclear. Here, we investigate the role of intrinsically disordered mixed-charge domains (MCDs) in nuclear speckle condensation. Proteins composed exclusively of arginine-aspartic acid dipeptide repeats undergo length-dependent condensation and speckle incorporation. Substituting arginine with lysine in synthetic and natural speckle-associated MCDs abolishes these activities, identifying a key role for multivalent contacts through arginine’s guanidinium ion. MCDs can synergize with a speckle-associated RNA recognition motif to promote speckle specificity and residence. MCD behavior is tunable through net-charge: increasing negative charge abolishes condensation and speckle incorporation. Contrastingly, increasing positive charge through arginine leads to enhanced condensation, speckle enlargement, decreased splicing factor mobility, and defective mRNA export. Together, these results identify key sequence determinants of MCD-promoted speckle condensation and link the dynamic material properties of speckles with function in mRNA processing.
[Display omitted]
•Arginine-enriched mixed-charge domains form condensates and drive speckle assembly•Substituting arginine with lysine abolishes mixed-charge domain (MCD) activity•MCDs synergize with RNA-binding domains to promote speckle residence•Increasing speckle cohesion through MCD expression leads to defects in mRNA export
Greig et al. analyze natural and synthetic low-complexity mixed-charge domains (MCDs) to identify key sequence features influencing nuclear speckle condensation and function. Increasing negative charge abolishes MCD activity, whereas increasing positive charge through arginine, but not lysine, leads to increased speckle cohesion, enlarged speckles, and defects in mRNA export. |
doi_str_mv | 10.1016/j.molcel.2020.01.025 |
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[Display omitted]
•Arginine-enriched mixed-charge domains form condensates and drive speckle assembly•Substituting arginine with lysine abolishes mixed-charge domain (MCD) activity•MCDs synergize with RNA-binding domains to promote speckle residence•Increasing speckle cohesion through MCD expression leads to defects in mRNA export
Greig et al. analyze natural and synthetic low-complexity mixed-charge domains (MCDs) to identify key sequence features influencing nuclear speckle condensation and function. Increasing negative charge abolishes MCD activity, whereas increasing positive charge through arginine, but not lysine, leads to increased speckle cohesion, enlarged speckles, and defects in mRNA export.</description><identifier>ISSN: 1097-2765</identifier><identifier>EISSN: 1097-4164</identifier><identifier>DOI: 10.1016/j.molcel.2020.01.025</identifier><identifier>PMID: 32048997</identifier><language>eng</language><publisher>CAMBRIDGE: Elsevier Inc</publisher><subject>Arginine - genetics ; Arginine - metabolism ; Biochemistry & Molecular Biology ; biomolecular condensate ; Cell Biology ; Cell Nucleus - genetics ; Cell Nucleus - metabolism ; Humans ; intrinsically disordered protein ; Intrinsically Disordered Proteins - genetics ; Intrinsically Disordered Proteins - metabolism ; Life Sciences & Biomedicine ; low-complexity domain ; Lysine - genetics ; Lysine - metabolism ; membraneless organelle ; mixed-charge domain ; mRNA processing ; Mutation ; nuclear speckle ; phase separation ; Phosphorylation ; Protein Domains ; ribonucleoprotein (RNP) bodies ; RNA Splicing - genetics ; RNA, Messenger - genetics ; RNA, Messenger - metabolism ; Science & Technology ; Serine-Arginine Splicing Factors - genetics ; Serine-Arginine Splicing Factors - metabolism</subject><ispartof>Molecular cell, 2020-03, Vol.77 (6), p.1237-1250.e4</ispartof><rights>2020 Elsevier Inc.</rights><rights>Copyright © 2020 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>true</woscitedreferencessubscribed><woscitedreferencescount>114</woscitedreferencescount><woscitedreferencesoriginalsourcerecordid>wos000520893700009</woscitedreferencesoriginalsourcerecordid><citedby>FETCH-LOGICAL-c530t-187c4fc4e8cc907f688d66a6aff5499ec3a5c5374e16aeacaa265dcdaacfad33</citedby><cites>FETCH-LOGICAL-c530t-187c4fc4e8cc907f688d66a6aff5499ec3a5c5374e16aeacaa265dcdaacfad33</cites><orcidid>0000-0002-5428-3873 ; 0000-0002-4155-5729</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.molcel.2020.01.025$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,315,782,786,887,3554,27933,27934,28257,46004</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32048997$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Greig, Jamie A.</creatorcontrib><creatorcontrib>Nguyen, Tu Anh</creatorcontrib><creatorcontrib>Lee, Michelle</creatorcontrib><creatorcontrib>Holehouse, Alex S.</creatorcontrib><creatorcontrib>Posey, Ammon E.</creatorcontrib><creatorcontrib>Pappu, Rohit V.</creatorcontrib><creatorcontrib>Jedd, Gregory</creatorcontrib><title>Arginine-Enriched Mixed-Charge Domains Provide Cohesion for Nuclear Speckle Condensation</title><title>Molecular cell</title><addtitle>MOL CELL</addtitle><addtitle>Mol Cell</addtitle><description>Low-complexity protein domains promote the formation of various biomolecular condensates. However, in many cases, the precise sequence features governing condensate formation and identity remain unclear. Here, we investigate the role of intrinsically disordered mixed-charge domains (MCDs) in nuclear speckle condensation. Proteins composed exclusively of arginine-aspartic acid dipeptide repeats undergo length-dependent condensation and speckle incorporation. Substituting arginine with lysine in synthetic and natural speckle-associated MCDs abolishes these activities, identifying a key role for multivalent contacts through arginine’s guanidinium ion. MCDs can synergize with a speckle-associated RNA recognition motif to promote speckle specificity and residence. MCD behavior is tunable through net-charge: increasing negative charge abolishes condensation and speckle incorporation. Contrastingly, increasing positive charge through arginine leads to enhanced condensation, speckle enlargement, decreased splicing factor mobility, and defective mRNA export. Together, these results identify key sequence determinants of MCD-promoted speckle condensation and link the dynamic material properties of speckles with function in mRNA processing.
[Display omitted]
•Arginine-enriched mixed-charge domains form condensates and drive speckle assembly•Substituting arginine with lysine abolishes mixed-charge domain (MCD) activity•MCDs synergize with RNA-binding domains to promote speckle residence•Increasing speckle cohesion through MCD expression leads to defects in mRNA export
Greig et al. analyze natural and synthetic low-complexity mixed-charge domains (MCDs) to identify key sequence features influencing nuclear speckle condensation and function. Increasing negative charge abolishes MCD activity, whereas increasing positive charge through arginine, but not lysine, leads to increased speckle cohesion, enlarged speckles, and defects in mRNA export.</description><subject>Arginine - genetics</subject><subject>Arginine - metabolism</subject><subject>Biochemistry & Molecular Biology</subject><subject>biomolecular condensate</subject><subject>Cell Biology</subject><subject>Cell Nucleus - genetics</subject><subject>Cell Nucleus - metabolism</subject><subject>Humans</subject><subject>intrinsically disordered protein</subject><subject>Intrinsically Disordered Proteins - genetics</subject><subject>Intrinsically Disordered Proteins - metabolism</subject><subject>Life Sciences & Biomedicine</subject><subject>low-complexity domain</subject><subject>Lysine - genetics</subject><subject>Lysine - metabolism</subject><subject>membraneless organelle</subject><subject>mixed-charge domain</subject><subject>mRNA processing</subject><subject>Mutation</subject><subject>nuclear speckle</subject><subject>phase separation</subject><subject>Phosphorylation</subject><subject>Protein Domains</subject><subject>ribonucleoprotein (RNP) bodies</subject><subject>RNA Splicing - genetics</subject><subject>RNA, Messenger - genetics</subject><subject>RNA, Messenger - metabolism</subject><subject>Science & Technology</subject><subject>Serine-Arginine Splicing Factors - genetics</subject><subject>Serine-Arginine Splicing Factors - metabolism</subject><issn>1097-2765</issn><issn>1097-4164</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>AOWDO</sourceid><sourceid>EIF</sourceid><recordid>eNqNkU1v1DAQhiMEoqXwDxDKEQkljB07Ti6gKrSAVD4keuBmufZk10tib-1kKf8eL1lWcEGcPNI873jsJ8ueEigJkPrlphz9oHEoKVAogZRA-b3slEArCkZqdv9QU1Hzk-xRjBsAwnjTPsxOKgqsaVtxmn09DyvrrMPiwgWr12jyD_YOTdGtVVhh_saPyrqYfw5-Zw3mnV9jtN7lvQ_5x1kPqEL-ZYv627BvOoMuqikBj7MHvRoiPjmcZ9n15cV19664-vT2fXd-VWhewVSQRmjWa4aN1i2Ivm4aU9eqVn3PWduirhRPpGBIaoVKK0VrbrRRSvfKVNVZ9noZu51vRjQa3RTUILfBjir8kF5Z-XfH2bVc-Z0kIAgnYj_h-WFC8LczxkmONqZ_HZRDP0dJK86I4JzQhLIF1cHHGLA_3kNA7qXIjVykyL0UCUQmKSn27M8dj6HfFhLwYgG-443vo7boNB4xAOAUmrYSqYI20c3_052dfuno_OymFH21RDEZ2VkM8hA3NqCepPH230_5CVDRwy0</recordid><startdate>20200319</startdate><enddate>20200319</enddate><creator>Greig, Jamie A.</creator><creator>Nguyen, Tu Anh</creator><creator>Lee, Michelle</creator><creator>Holehouse, Alex S.</creator><creator>Posey, Ammon E.</creator><creator>Pappu, Rohit V.</creator><creator>Jedd, Gregory</creator><general>Elsevier Inc</general><general>Elsevier</general><scope>6I.</scope><scope>AAFTH</scope><scope>AOWDO</scope><scope>BLEPL</scope><scope>DTL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-5428-3873</orcidid><orcidid>https://orcid.org/0000-0002-4155-5729</orcidid></search><sort><creationdate>20200319</creationdate><title>Arginine-Enriched Mixed-Charge Domains Provide Cohesion for Nuclear Speckle Condensation</title><author>Greig, Jamie A. ; Nguyen, Tu Anh ; Lee, Michelle ; Holehouse, Alex S. ; Posey, Ammon E. ; Pappu, Rohit V. ; Jedd, Gregory</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c530t-187c4fc4e8cc907f688d66a6aff5499ec3a5c5374e16aeacaa265dcdaacfad33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Arginine - genetics</topic><topic>Arginine - metabolism</topic><topic>Biochemistry & Molecular Biology</topic><topic>biomolecular condensate</topic><topic>Cell Biology</topic><topic>Cell Nucleus - genetics</topic><topic>Cell Nucleus - metabolism</topic><topic>Humans</topic><topic>intrinsically disordered protein</topic><topic>Intrinsically Disordered Proteins - genetics</topic><topic>Intrinsically Disordered Proteins - metabolism</topic><topic>Life Sciences & Biomedicine</topic><topic>low-complexity domain</topic><topic>Lysine - genetics</topic><topic>Lysine - metabolism</topic><topic>membraneless organelle</topic><topic>mixed-charge domain</topic><topic>mRNA processing</topic><topic>Mutation</topic><topic>nuclear speckle</topic><topic>phase separation</topic><topic>Phosphorylation</topic><topic>Protein Domains</topic><topic>ribonucleoprotein (RNP) bodies</topic><topic>RNA Splicing - genetics</topic><topic>RNA, Messenger - genetics</topic><topic>RNA, Messenger - metabolism</topic><topic>Science & Technology</topic><topic>Serine-Arginine Splicing Factors - genetics</topic><topic>Serine-Arginine Splicing Factors - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Greig, Jamie A.</creatorcontrib><creatorcontrib>Nguyen, Tu Anh</creatorcontrib><creatorcontrib>Lee, Michelle</creatorcontrib><creatorcontrib>Holehouse, Alex S.</creatorcontrib><creatorcontrib>Posey, Ammon E.</creatorcontrib><creatorcontrib>Pappu, Rohit V.</creatorcontrib><creatorcontrib>Jedd, Gregory</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Web of Science - Science Citation Index Expanded - 2020</collection><collection>Web of Science Core Collection</collection><collection>Science Citation Index Expanded</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Molecular cell</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Greig, Jamie A.</au><au>Nguyen, Tu Anh</au><au>Lee, Michelle</au><au>Holehouse, Alex S.</au><au>Posey, Ammon E.</au><au>Pappu, Rohit V.</au><au>Jedd, Gregory</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Arginine-Enriched Mixed-Charge Domains Provide Cohesion for Nuclear Speckle Condensation</atitle><jtitle>Molecular cell</jtitle><stitle>MOL CELL</stitle><addtitle>Mol Cell</addtitle><date>2020-03-19</date><risdate>2020</risdate><volume>77</volume><issue>6</issue><spage>1237</spage><epage>1250.e4</epage><pages>1237-1250.e4</pages><issn>1097-2765</issn><eissn>1097-4164</eissn><abstract>Low-complexity protein domains promote the formation of various biomolecular condensates. However, in many cases, the precise sequence features governing condensate formation and identity remain unclear. Here, we investigate the role of intrinsically disordered mixed-charge domains (MCDs) in nuclear speckle condensation. Proteins composed exclusively of arginine-aspartic acid dipeptide repeats undergo length-dependent condensation and speckle incorporation. Substituting arginine with lysine in synthetic and natural speckle-associated MCDs abolishes these activities, identifying a key role for multivalent contacts through arginine’s guanidinium ion. MCDs can synergize with a speckle-associated RNA recognition motif to promote speckle specificity and residence. MCD behavior is tunable through net-charge: increasing negative charge abolishes condensation and speckle incorporation. Contrastingly, increasing positive charge through arginine leads to enhanced condensation, speckle enlargement, decreased splicing factor mobility, and defective mRNA export. Together, these results identify key sequence determinants of MCD-promoted speckle condensation and link the dynamic material properties of speckles with function in mRNA processing.
[Display omitted]
•Arginine-enriched mixed-charge domains form condensates and drive speckle assembly•Substituting arginine with lysine abolishes mixed-charge domain (MCD) activity•MCDs synergize with RNA-binding domains to promote speckle residence•Increasing speckle cohesion through MCD expression leads to defects in mRNA export
Greig et al. analyze natural and synthetic low-complexity mixed-charge domains (MCDs) to identify key sequence features influencing nuclear speckle condensation and function. Increasing negative charge abolishes MCD activity, whereas increasing positive charge through arginine, but not lysine, leads to increased speckle cohesion, enlarged speckles, and defects in mRNA export.</abstract><cop>CAMBRIDGE</cop><pub>Elsevier Inc</pub><pmid>32048997</pmid><doi>10.1016/j.molcel.2020.01.025</doi><tpages>18</tpages><orcidid>https://orcid.org/0000-0002-5428-3873</orcidid><orcidid>https://orcid.org/0000-0002-4155-5729</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Arginine - genetics Arginine - metabolism Biochemistry & Molecular Biology biomolecular condensate Cell Biology Cell Nucleus - genetics Cell Nucleus - metabolism Humans intrinsically disordered protein Intrinsically Disordered Proteins - genetics Intrinsically Disordered Proteins - metabolism Life Sciences & Biomedicine low-complexity domain Lysine - genetics Lysine - metabolism membraneless organelle mixed-charge domain mRNA processing Mutation nuclear speckle phase separation Phosphorylation Protein Domains ribonucleoprotein (RNP) bodies RNA Splicing - genetics RNA, Messenger - genetics RNA, Messenger - metabolism Science & Technology Serine-Arginine Splicing Factors - genetics Serine-Arginine Splicing Factors - metabolism |
title | Arginine-Enriched Mixed-Charge Domains Provide Cohesion for Nuclear Speckle Condensation |
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