Improved Criteria for the Classification of Titin Variants in Inherited Skeletal Myopathies
BACKGROUND: Extensive genetic screening results in the identification of thousands of rare variants that are difficult to interpret. Because of its sheer size, rare variants in the titin gene (TTN) are detected frequently in any individual. Unambiguous interpretation of molecular findings is almost...
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Veröffentlicht in: | Journal of neuromuscular diseases 2020-01, Vol.7 (2), p.153-166 |
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creator | Savarese, Marco Johari, Mridul Johnson, Katherine Arumilli, Meharji Torella, Annalaura Töpf, Ana Rubegni, Anna Kuhn, Marius Giugliano, Teresa Gläser, Dieter Fattori, Fabiana Thompson, Rachel Penttilä, Sini Lehtinen, Sara Gibertini, Sara Ruggieri, Alessandra Mora, Marina Maver, Ales Peterlin, Borut Mankodi, Ami Lochmüller, Hanns Santorelli, Filippo Maria Schoser, Benedikt Fajkusová, Lenka Straub, Volker Nigro, Vincenzo Hackman, Peter Udd, Bjarne |
description | BACKGROUND:
Extensive genetic screening results in the identification of thousands of rare variants that are difficult to interpret. Because of its sheer size, rare variants in the titin gene (TTN) are detected frequently in any individual. Unambiguous interpretation of molecular findings is almost impossible in many patients with myopathies or cardiomyopathies.
OBJECTIVE:
To refine the current classification framework for TTN-associated skeletal muscle disorders and standardize the interpretation of TTN variants.
METHODS:
We used the guidelines issued by the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) to re-analyze TTN genetic findings from our patient cohort.
RESULTS:
We identified in the classification guidelines three rules that are not applicable to titin-related skeletal muscle disorders; six rules that require disease-/gene-specific adjustments and four rules requiring quantitative thresholds for a proper use. In three cases, the rule strength need to be modified.
CONCLUSIONS:
We suggest adjustments are made to the guidelines. We provide frequency thresholds to facilitate filtering of candidate causative variants and guidance for the use and interpretation of functional data and co-segregation evidence. We expect that the variant classification framework for TTN-related skeletal muscle disorders will be further improved along with a better understanding of these diseases. |
doi_str_mv | 10.3233/JND-190423 |
format | Article |
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Extensive genetic screening results in the identification of thousands of rare variants that are difficult to interpret. Because of its sheer size, rare variants in the titin gene (TTN) are detected frequently in any individual. Unambiguous interpretation of molecular findings is almost impossible in many patients with myopathies or cardiomyopathies.
OBJECTIVE:
To refine the current classification framework for TTN-associated skeletal muscle disorders and standardize the interpretation of TTN variants.
METHODS:
We used the guidelines issued by the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) to re-analyze TTN genetic findings from our patient cohort.
RESULTS:
We identified in the classification guidelines three rules that are not applicable to titin-related skeletal muscle disorders; six rules that require disease-/gene-specific adjustments and four rules requiring quantitative thresholds for a proper use. In three cases, the rule strength need to be modified.
CONCLUSIONS:
We suggest adjustments are made to the guidelines. We provide frequency thresholds to facilitate filtering of candidate causative variants and guidance for the use and interpretation of functional data and co-segregation evidence. We expect that the variant classification framework for TTN-related skeletal muscle disorders will be further improved along with a better understanding of these diseases.</description><identifier>ISSN: 2214-3599</identifier><identifier>EISSN: 2214-3602</identifier><identifier>DOI: 10.3233/JND-190423</identifier><identifier>PMID: 32039858</identifier><language>eng</language><publisher>London, England: SAGE Publications</publisher><subject>Classification ; Connectin ; Genetic screening ; Genomics ; Musculoskeletal system ; Skeletal muscle</subject><ispartof>Journal of neuromuscular diseases, 2020-01, Vol.7 (2), p.153-166</ispartof><rights>2020 – IOS Press and the authors. All rights reserved</rights><rights>Copyright IOS Press BV 2020</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c347t-3444ccd470de8ab3dd1ab811f6784976439b17dea9a95ab091d102e6b0feb0443</citedby><cites>FETCH-LOGICAL-c347t-3444ccd470de8ab3dd1ab811f6784976439b17dea9a95ab091d102e6b0feb0443</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://journals.sagepub.com/doi/pdf/10.3233/JND-190423$$EPDF$$P50$$Gsage$$H</linktopdf><linktohtml>$$Uhttps://journals.sagepub.com/doi/10.3233/JND-190423$$EHTML$$P50$$Gsage$$H</linktohtml><link.rule.ids>314,780,784,21966,27853,27924,27925,44945,45333</link.rule.ids><linktorsrc>$$Uhttps://journals.sagepub.com/doi/full/10.3233/JND-190423?utm_source=summon&utm_medium=discovery-provider$$EView_record_in_SAGE_Publications$$FView_record_in_$$GSAGE_Publications</linktorsrc><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32039858$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Savarese, Marco</creatorcontrib><creatorcontrib>Johari, Mridul</creatorcontrib><creatorcontrib>Johnson, Katherine</creatorcontrib><creatorcontrib>Arumilli, Meharji</creatorcontrib><creatorcontrib>Torella, Annalaura</creatorcontrib><creatorcontrib>Töpf, Ana</creatorcontrib><creatorcontrib>Rubegni, Anna</creatorcontrib><creatorcontrib>Kuhn, Marius</creatorcontrib><creatorcontrib>Giugliano, Teresa</creatorcontrib><creatorcontrib>Gläser, Dieter</creatorcontrib><creatorcontrib>Fattori, Fabiana</creatorcontrib><creatorcontrib>Thompson, Rachel</creatorcontrib><creatorcontrib>Penttilä, Sini</creatorcontrib><creatorcontrib>Lehtinen, Sara</creatorcontrib><creatorcontrib>Gibertini, Sara</creatorcontrib><creatorcontrib>Ruggieri, Alessandra</creatorcontrib><creatorcontrib>Mora, Marina</creatorcontrib><creatorcontrib>Maver, Ales</creatorcontrib><creatorcontrib>Peterlin, Borut</creatorcontrib><creatorcontrib>Mankodi, Ami</creatorcontrib><creatorcontrib>Lochmüller, Hanns</creatorcontrib><creatorcontrib>Santorelli, Filippo Maria</creatorcontrib><creatorcontrib>Schoser, Benedikt</creatorcontrib><creatorcontrib>Fajkusová, Lenka</creatorcontrib><creatorcontrib>Straub, Volker</creatorcontrib><creatorcontrib>Nigro, Vincenzo</creatorcontrib><creatorcontrib>Hackman, Peter</creatorcontrib><creatorcontrib>Udd, Bjarne</creatorcontrib><title>Improved Criteria for the Classification of Titin Variants in Inherited Skeletal Myopathies</title><title>Journal of neuromuscular diseases</title><addtitle>J Neuromuscul Dis</addtitle><description>BACKGROUND:
Extensive genetic screening results in the identification of thousands of rare variants that are difficult to interpret. Because of its sheer size, rare variants in the titin gene (TTN) are detected frequently in any individual. Unambiguous interpretation of molecular findings is almost impossible in many patients with myopathies or cardiomyopathies.
OBJECTIVE:
To refine the current classification framework for TTN-associated skeletal muscle disorders and standardize the interpretation of TTN variants.
METHODS:
We used the guidelines issued by the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) to re-analyze TTN genetic findings from our patient cohort.
RESULTS:
We identified in the classification guidelines three rules that are not applicable to titin-related skeletal muscle disorders; six rules that require disease-/gene-specific adjustments and four rules requiring quantitative thresholds for a proper use. In three cases, the rule strength need to be modified.
CONCLUSIONS:
We suggest adjustments are made to the guidelines. We provide frequency thresholds to facilitate filtering of candidate causative variants and guidance for the use and interpretation of functional data and co-segregation evidence. We expect that the variant classification framework for TTN-related skeletal muscle disorders will be further improved along with a better understanding of these diseases.</description><subject>Classification</subject><subject>Connectin</subject><subject>Genetic screening</subject><subject>Genomics</subject><subject>Musculoskeletal system</subject><subject>Skeletal muscle</subject><issn>2214-3599</issn><issn>2214-3602</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNpt0MtKxDAUBuAgiorOxgeQgAtFqJ40adMsZbyNeFk4unFR0ubUiXbaMckIvr0ZxguIq5zFlz85PyE7DI54yvnx1e1pwhSIlK-QzTRlIuE5pKvfc6bUBhl4_wIATBY8A7VONngKXBVZsUmeRtOZ69_R0KGzAZ3VtOkdDROkw1Z7bxtb62D7jvYNHdtgO_qoo-qCp3EedRNc3DP0_hVbDLqlNx_9TIeJRb9N1hrdehx8nVvk4fxsPLxMru8uRsOT66TmQoaECyHq2ggJBgtdcWOYrgrGmlwWQslccFUxaVArrTJdgWKGQYp5BQ1WIATfIgfL3LjJ2xx9KKfW19i2usN-7suUZxwYSOCR7v2hL_3cdfF3UUklBWO5jOpwqWrXe--wKWfOTrX7KBmUi9bL2Hq5bD3i3a_IeTVF80O_O45gfwm8fsbf9_6J-gSPLoeq</recordid><startdate>20200101</startdate><enddate>20200101</enddate><creator>Savarese, Marco</creator><creator>Johari, Mridul</creator><creator>Johnson, Katherine</creator><creator>Arumilli, Meharji</creator><creator>Torella, Annalaura</creator><creator>Töpf, Ana</creator><creator>Rubegni, Anna</creator><creator>Kuhn, Marius</creator><creator>Giugliano, Teresa</creator><creator>Gläser, Dieter</creator><creator>Fattori, Fabiana</creator><creator>Thompson, Rachel</creator><creator>Penttilä, Sini</creator><creator>Lehtinen, Sara</creator><creator>Gibertini, Sara</creator><creator>Ruggieri, Alessandra</creator><creator>Mora, Marina</creator><creator>Maver, Ales</creator><creator>Peterlin, Borut</creator><creator>Mankodi, Ami</creator><creator>Lochmüller, Hanns</creator><creator>Santorelli, Filippo Maria</creator><creator>Schoser, Benedikt</creator><creator>Fajkusová, Lenka</creator><creator>Straub, Volker</creator><creator>Nigro, Vincenzo</creator><creator>Hackman, Peter</creator><creator>Udd, Bjarne</creator><general>SAGE Publications</general><general>IOS Press BV</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20200101</creationdate><title>Improved Criteria for the Classification of Titin Variants in Inherited Skeletal Myopathies</title><author>Savarese, Marco ; Johari, Mridul ; Johnson, Katherine ; Arumilli, Meharji ; Torella, Annalaura ; Töpf, Ana ; Rubegni, Anna ; Kuhn, Marius ; Giugliano, Teresa ; Gläser, Dieter ; Fattori, Fabiana ; Thompson, Rachel ; Penttilä, Sini ; Lehtinen, Sara ; Gibertini, Sara ; Ruggieri, Alessandra ; Mora, Marina ; Maver, Ales ; Peterlin, Borut ; Mankodi, Ami ; Lochmüller, Hanns ; Santorelli, Filippo Maria ; Schoser, Benedikt ; Fajkusová, Lenka ; Straub, Volker ; Nigro, Vincenzo ; Hackman, Peter ; Udd, Bjarne</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c347t-3444ccd470de8ab3dd1ab811f6784976439b17dea9a95ab091d102e6b0feb0443</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Classification</topic><topic>Connectin</topic><topic>Genetic screening</topic><topic>Genomics</topic><topic>Musculoskeletal system</topic><topic>Skeletal muscle</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Savarese, Marco</creatorcontrib><creatorcontrib>Johari, Mridul</creatorcontrib><creatorcontrib>Johnson, Katherine</creatorcontrib><creatorcontrib>Arumilli, Meharji</creatorcontrib><creatorcontrib>Torella, Annalaura</creatorcontrib><creatorcontrib>Töpf, Ana</creatorcontrib><creatorcontrib>Rubegni, Anna</creatorcontrib><creatorcontrib>Kuhn, Marius</creatorcontrib><creatorcontrib>Giugliano, Teresa</creatorcontrib><creatorcontrib>Gläser, Dieter</creatorcontrib><creatorcontrib>Fattori, Fabiana</creatorcontrib><creatorcontrib>Thompson, Rachel</creatorcontrib><creatorcontrib>Penttilä, Sini</creatorcontrib><creatorcontrib>Lehtinen, Sara</creatorcontrib><creatorcontrib>Gibertini, Sara</creatorcontrib><creatorcontrib>Ruggieri, Alessandra</creatorcontrib><creatorcontrib>Mora, Marina</creatorcontrib><creatorcontrib>Maver, Ales</creatorcontrib><creatorcontrib>Peterlin, Borut</creatorcontrib><creatorcontrib>Mankodi, Ami</creatorcontrib><creatorcontrib>Lochmüller, Hanns</creatorcontrib><creatorcontrib>Santorelli, Filippo Maria</creatorcontrib><creatorcontrib>Schoser, Benedikt</creatorcontrib><creatorcontrib>Fajkusová, Lenka</creatorcontrib><creatorcontrib>Straub, Volker</creatorcontrib><creatorcontrib>Nigro, Vincenzo</creatorcontrib><creatorcontrib>Hackman, Peter</creatorcontrib><creatorcontrib>Udd, Bjarne</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Neurosciences Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of neuromuscular diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Savarese, Marco</au><au>Johari, Mridul</au><au>Johnson, Katherine</au><au>Arumilli, Meharji</au><au>Torella, Annalaura</au><au>Töpf, Ana</au><au>Rubegni, Anna</au><au>Kuhn, Marius</au><au>Giugliano, Teresa</au><au>Gläser, Dieter</au><au>Fattori, Fabiana</au><au>Thompson, Rachel</au><au>Penttilä, Sini</au><au>Lehtinen, Sara</au><au>Gibertini, Sara</au><au>Ruggieri, Alessandra</au><au>Mora, Marina</au><au>Maver, Ales</au><au>Peterlin, Borut</au><au>Mankodi, Ami</au><au>Lochmüller, Hanns</au><au>Santorelli, Filippo Maria</au><au>Schoser, Benedikt</au><au>Fajkusová, Lenka</au><au>Straub, Volker</au><au>Nigro, Vincenzo</au><au>Hackman, Peter</au><au>Udd, Bjarne</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Improved Criteria for the Classification of Titin Variants in Inherited Skeletal Myopathies</atitle><jtitle>Journal of neuromuscular diseases</jtitle><addtitle>J Neuromuscul Dis</addtitle><date>2020-01-01</date><risdate>2020</risdate><volume>7</volume><issue>2</issue><spage>153</spage><epage>166</epage><pages>153-166</pages><issn>2214-3599</issn><eissn>2214-3602</eissn><abstract>BACKGROUND:
Extensive genetic screening results in the identification of thousands of rare variants that are difficult to interpret. Because of its sheer size, rare variants in the titin gene (TTN) are detected frequently in any individual. Unambiguous interpretation of molecular findings is almost impossible in many patients with myopathies or cardiomyopathies.
OBJECTIVE:
To refine the current classification framework for TTN-associated skeletal muscle disorders and standardize the interpretation of TTN variants.
METHODS:
We used the guidelines issued by the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) to re-analyze TTN genetic findings from our patient cohort.
RESULTS:
We identified in the classification guidelines three rules that are not applicable to titin-related skeletal muscle disorders; six rules that require disease-/gene-specific adjustments and four rules requiring quantitative thresholds for a proper use. In three cases, the rule strength need to be modified.
CONCLUSIONS:
We suggest adjustments are made to the guidelines. We provide frequency thresholds to facilitate filtering of candidate causative variants and guidance for the use and interpretation of functional data and co-segregation evidence. We expect that the variant classification framework for TTN-related skeletal muscle disorders will be further improved along with a better understanding of these diseases.</abstract><cop>London, England</cop><pub>SAGE Publications</pub><pmid>32039858</pmid><doi>10.3233/JND-190423</doi><tpages>14</tpages></addata></record> |
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language | eng |
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source | Sage Journals GOLD Open Access 2024 |
subjects | Classification Connectin Genetic screening Genomics Musculoskeletal system Skeletal muscle |
title | Improved Criteria for the Classification of Titin Variants in Inherited Skeletal Myopathies |
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