Improved Criteria for the Classification of Titin Variants in Inherited Skeletal Myopathies

BACKGROUND: Extensive genetic screening results in the identification of thousands of rare variants that are difficult to interpret. Because of its sheer size, rare variants in the titin gene (TTN) are detected frequently in any individual. Unambiguous interpretation of molecular findings is almost...

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Veröffentlicht in:Journal of neuromuscular diseases 2020-01, Vol.7 (2), p.153-166
Hauptverfasser: Savarese, Marco, Johari, Mridul, Johnson, Katherine, Arumilli, Meharji, Torella, Annalaura, Töpf, Ana, Rubegni, Anna, Kuhn, Marius, Giugliano, Teresa, Gläser, Dieter, Fattori, Fabiana, Thompson, Rachel, Penttilä, Sini, Lehtinen, Sara, Gibertini, Sara, Ruggieri, Alessandra, Mora, Marina, Maver, Ales, Peterlin, Borut, Mankodi, Ami, Lochmüller, Hanns, Santorelli, Filippo Maria, Schoser, Benedikt, Fajkusová, Lenka, Straub, Volker, Nigro, Vincenzo, Hackman, Peter, Udd, Bjarne
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container_end_page 166
container_issue 2
container_start_page 153
container_title Journal of neuromuscular diseases
container_volume 7
creator Savarese, Marco
Johari, Mridul
Johnson, Katherine
Arumilli, Meharji
Torella, Annalaura
Töpf, Ana
Rubegni, Anna
Kuhn, Marius
Giugliano, Teresa
Gläser, Dieter
Fattori, Fabiana
Thompson, Rachel
Penttilä, Sini
Lehtinen, Sara
Gibertini, Sara
Ruggieri, Alessandra
Mora, Marina
Maver, Ales
Peterlin, Borut
Mankodi, Ami
Lochmüller, Hanns
Santorelli, Filippo Maria
Schoser, Benedikt
Fajkusová, Lenka
Straub, Volker
Nigro, Vincenzo
Hackman, Peter
Udd, Bjarne
description BACKGROUND: Extensive genetic screening results in the identification of thousands of rare variants that are difficult to interpret. Because of its sheer size, rare variants in the titin gene (TTN) are detected frequently in any individual. Unambiguous interpretation of molecular findings is almost impossible in many patients with myopathies or cardiomyopathies. OBJECTIVE: To refine the current classification framework for TTN-associated skeletal muscle disorders and standardize the interpretation of TTN variants. METHODS: We used the guidelines issued by the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) to re-analyze TTN genetic findings from our patient cohort. RESULTS: We identified in the classification guidelines three rules that are not applicable to titin-related skeletal muscle disorders; six rules that require disease-/gene-specific adjustments and four rules requiring quantitative thresholds for a proper use. In three cases, the rule strength need to be modified. CONCLUSIONS: We suggest adjustments are made to the guidelines. We provide frequency thresholds to facilitate filtering of candidate causative variants and guidance for the use and interpretation of functional data and co-segregation evidence. We expect that the variant classification framework for TTN-related skeletal muscle disorders will be further improved along with a better understanding of these diseases.
doi_str_mv 10.3233/JND-190423
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Because of its sheer size, rare variants in the titin gene (TTN) are detected frequently in any individual. Unambiguous interpretation of molecular findings is almost impossible in many patients with myopathies or cardiomyopathies. OBJECTIVE: To refine the current classification framework for TTN-associated skeletal muscle disorders and standardize the interpretation of TTN variants. METHODS: We used the guidelines issued by the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) to re-analyze TTN genetic findings from our patient cohort. RESULTS: We identified in the classification guidelines three rules that are not applicable to titin-related skeletal muscle disorders; six rules that require disease-/gene-specific adjustments and four rules requiring quantitative thresholds for a proper use. In three cases, the rule strength need to be modified. CONCLUSIONS: We suggest adjustments are made to the guidelines. We provide frequency thresholds to facilitate filtering of candidate causative variants and guidance for the use and interpretation of functional data and co-segregation evidence. We expect that the variant classification framework for TTN-related skeletal muscle disorders will be further improved along with a better understanding of these diseases.</description><identifier>ISSN: 2214-3599</identifier><identifier>EISSN: 2214-3602</identifier><identifier>DOI: 10.3233/JND-190423</identifier><identifier>PMID: 32039858</identifier><language>eng</language><publisher>London, England: SAGE Publications</publisher><subject>Classification ; Connectin ; Genetic screening ; Genomics ; Musculoskeletal system ; Skeletal muscle</subject><ispartof>Journal of neuromuscular diseases, 2020-01, Vol.7 (2), p.153-166</ispartof><rights>2020 – IOS Press and the authors. 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subjects Classification
Connectin
Genetic screening
Genomics
Musculoskeletal system
Skeletal muscle
title Improved Criteria for the Classification of Titin Variants in Inherited Skeletal Myopathies
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