Characterisation of barley landraces from Syria and Jordan for resistance to rhynchosporium and identification of diagnostic markers for Rrs1Rh4
Key message Diagnostic markers for Rrs1 Rh4 have been identified by testing for associations between SNPs within the Rrs1 interval in 150 barley genotypes and their resistance to Rhynchosporium commune isolates recognised by lines containing Rrs1. Rhynchosporium or barley scald, caused by the destru...
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| Veröffentlicht in: | Theoretical and applied genetics 2020-04, Vol.133 (4), p.1243-1264 |
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| creator | Looseley, Mark E. Griffe, Lucie L. Büttner, Bianca Wright, Kathryn M. Bayer, Micha M. Coulter, Max Thauvin, Jean-Noël Middlefell-Williams, Jill Maluk, Marta Okpo, Aleksandra Kettles, Nicola Werner, Peter Byrne, Ed Avrova, Anna |
| description | Key message
Diagnostic markers for
Rrs1
Rh4
have been identified by testing for associations between SNPs within the
Rrs1
interval in 150 barley genotypes and their resistance to
Rhynchosporium commune
isolates recognised by lines containing
Rrs1.
Rhynchosporium or barley scald, caused by the destructive fungal pathogen
Rhynchosporium commune,
is one of the most economically important diseases of barley in the world. Barley landraces from Syria and Jordan demonstrated high resistance to rhynchosporium in the field. Genotyping of a wide range of barley cultivars and landraces, including known sources of different
Rrs1
genes/alleles, across the
Rrs1
interval, followed by association analysis of this genotypic data with resistance phenotypes to
R. commune
isolates recognised by
Rrs1,
allowed the identification of diagnostic markers for
Rrs1
Rh4
. These markers are specific to
Rrs1
Rh4
and do not detect other
Rrs1
genes/alleles. The
Rrs1
Rh4
diagnostic markers represent a resource that can be exploited by breeders for the sustainable deployment of varietal resistance in new cultivars. Thirteen out of the 55 most resistant Syrian and Jordanian landraces were shown to contain markers specific to
Rrs1
Rh4
. One of these lines came from Jordan, with the remaining 12 lines from different locations in Syria. One of the Syrian landraces containing
Rrs1
Rh4
was also shown to have
Rrs2
. The remaining landraces that performed well against rhynchosporium in the field are likely to contain other resistance genes and represent an important novel resource yet to be exploited by European breeders. |
| doi_str_mv | 10.1007/s00122-020-03545-9 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2343502819</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2375663537</sourcerecordid><originalsourceid>FETCH-LOGICAL-c2679-b58470b205779e3c17b33216bfeb1ab8751f1a642c0d1763f0ae6052b4866493</originalsourceid><addsrcrecordid>eNp9kcuOUzEMhiMEEmXgBVhFYsPmMM69XaKKq0ZCGmYf5eQk0wxtUuzTRd-CRyZtEUizYGXJ_vzJ1s_YawHvBIC7JgAh5QASBlBGm2H1hC2EVnKQUsunbAGgYTDOyOfsBdEDAEgDasF-rTcBQ5wTFgpzaZW3zMeA23Tk21CnPkvEM7Yd_37EEnjv8a8Np1B5bsgxUaE51Jj43DhujjVuGu0blsPuzJYp1bnkEv_apxLua6O5RL4L-CMhnU23SOJ2o1-yZzlsKb36U6_Y3ccPd-vPw823T1_W72-GKK1bDaNZagejBOPcKqko3KiUFHbMaRRhXDojsghWywiTcFZlCMmCkaNeWqtX6oq9vWj32H4eEs1-Vyimbf85tQN5qbQyIJfihL55hD60A9Z-XKecsVYZ5TolL1TERoQp-z2W_t_RC_CnjPwlI98z8ueM_EmtLkvU4Xqf8J_6P1u_AWmhlT0</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2375663537</pqid></control><display><type>article</type><title>Characterisation of barley landraces from Syria and Jordan for resistance to rhynchosporium and identification of diagnostic markers for Rrs1Rh4</title><source>SpringerLink Journals - AutoHoldings</source><creator>Looseley, Mark E. ; Griffe, Lucie L. ; Büttner, Bianca ; Wright, Kathryn M. ; Bayer, Micha M. ; Coulter, Max ; Thauvin, Jean-Noël ; Middlefell-Williams, Jill ; Maluk, Marta ; Okpo, Aleksandra ; Kettles, Nicola ; Werner, Peter ; Byrne, Ed ; Avrova, Anna</creator><creatorcontrib>Looseley, Mark E. ; Griffe, Lucie L. ; Büttner, Bianca ; Wright, Kathryn M. ; Bayer, Micha M. ; Coulter, Max ; Thauvin, Jean-Noël ; Middlefell-Williams, Jill ; Maluk, Marta ; Okpo, Aleksandra ; Kettles, Nicola ; Werner, Peter ; Byrne, Ed ; Avrova, Anna</creatorcontrib><description>Key message
Diagnostic markers for
Rrs1
Rh4
have been identified by testing for associations between SNPs within the
Rrs1
interval in 150 barley genotypes and their resistance to
Rhynchosporium commune
isolates recognised by lines containing
Rrs1.
Rhynchosporium or barley scald, caused by the destructive fungal pathogen
Rhynchosporium commune,
is one of the most economically important diseases of barley in the world. Barley landraces from Syria and Jordan demonstrated high resistance to rhynchosporium in the field. Genotyping of a wide range of barley cultivars and landraces, including known sources of different
Rrs1
genes/alleles, across the
Rrs1
interval, followed by association analysis of this genotypic data with resistance phenotypes to
R. commune
isolates recognised by
Rrs1,
allowed the identification of diagnostic markers for
Rrs1
Rh4
. These markers are specific to
Rrs1
Rh4
and do not detect other
Rrs1
genes/alleles. The
Rrs1
Rh4
diagnostic markers represent a resource that can be exploited by breeders for the sustainable deployment of varietal resistance in new cultivars. Thirteen out of the 55 most resistant Syrian and Jordanian landraces were shown to contain markers specific to
Rrs1
Rh4
. One of these lines came from Jordan, with the remaining 12 lines from different locations in Syria. One of the Syrian landraces containing
Rrs1
Rh4
was also shown to have
Rrs2
. The remaining landraces that performed well against rhynchosporium in the field are likely to contain other resistance genes and represent an important novel resource yet to be exploited by European breeders.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-020-03545-9</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Agriculture ; Alleles ; Association analysis ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Cultivars ; Genotypes ; Genotyping ; Life Sciences ; Original Article ; Phenotypes ; Plant Biochemistry ; Plant Breeding/Biotechnology ; Plant Genetics and Genomics ; Rhynchosporium commune ; Scald ; Single-nucleotide polymorphism</subject><ispartof>Theoretical and applied genetics, 2020-04, Vol.133 (4), p.1243-1264</ispartof><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2020</rights><rights>Theoretical and Applied Genetics is a copyright of Springer, (2020). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2679-b58470b205779e3c17b33216bfeb1ab8751f1a642c0d1763f0ae6052b4866493</citedby><cites>FETCH-LOGICAL-c2679-b58470b205779e3c17b33216bfeb1ab8751f1a642c0d1763f0ae6052b4866493</cites><orcidid>0000-0002-3527-9027</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00122-020-03545-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00122-020-03545-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41467,42536,51297</link.rule.ids></links><search><creatorcontrib>Looseley, Mark E.</creatorcontrib><creatorcontrib>Griffe, Lucie L.</creatorcontrib><creatorcontrib>Büttner, Bianca</creatorcontrib><creatorcontrib>Wright, Kathryn M.</creatorcontrib><creatorcontrib>Bayer, Micha M.</creatorcontrib><creatorcontrib>Coulter, Max</creatorcontrib><creatorcontrib>Thauvin, Jean-Noël</creatorcontrib><creatorcontrib>Middlefell-Williams, Jill</creatorcontrib><creatorcontrib>Maluk, Marta</creatorcontrib><creatorcontrib>Okpo, Aleksandra</creatorcontrib><creatorcontrib>Kettles, Nicola</creatorcontrib><creatorcontrib>Werner, Peter</creatorcontrib><creatorcontrib>Byrne, Ed</creatorcontrib><creatorcontrib>Avrova, Anna</creatorcontrib><title>Characterisation of barley landraces from Syria and Jordan for resistance to rhynchosporium and identification of diagnostic markers for Rrs1Rh4</title><title>Theoretical and applied genetics</title><addtitle>Theor Appl Genet</addtitle><description>Key message
Diagnostic markers for
Rrs1
Rh4
have been identified by testing for associations between SNPs within the
Rrs1
interval in 150 barley genotypes and their resistance to
Rhynchosporium commune
isolates recognised by lines containing
Rrs1.
Rhynchosporium or barley scald, caused by the destructive fungal pathogen
Rhynchosporium commune,
is one of the most economically important diseases of barley in the world. Barley landraces from Syria and Jordan demonstrated high resistance to rhynchosporium in the field. Genotyping of a wide range of barley cultivars and landraces, including known sources of different
Rrs1
genes/alleles, across the
Rrs1
interval, followed by association analysis of this genotypic data with resistance phenotypes to
R. commune
isolates recognised by
Rrs1,
allowed the identification of diagnostic markers for
Rrs1
Rh4
. These markers are specific to
Rrs1
Rh4
and do not detect other
Rrs1
genes/alleles. The
Rrs1
Rh4
diagnostic markers represent a resource that can be exploited by breeders for the sustainable deployment of varietal resistance in new cultivars. Thirteen out of the 55 most resistant Syrian and Jordanian landraces were shown to contain markers specific to
Rrs1
Rh4
. One of these lines came from Jordan, with the remaining 12 lines from different locations in Syria. One of the Syrian landraces containing
Rrs1
Rh4
was also shown to have
Rrs2
. The remaining landraces that performed well against rhynchosporium in the field are likely to contain other resistance genes and represent an important novel resource yet to be exploited by European breeders.</description><subject>Agriculture</subject><subject>Alleles</subject><subject>Association analysis</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Cultivars</subject><subject>Genotypes</subject><subject>Genotyping</subject><subject>Life Sciences</subject><subject>Original Article</subject><subject>Phenotypes</subject><subject>Plant Biochemistry</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Genetics and Genomics</subject><subject>Rhynchosporium commune</subject><subject>Scald</subject><subject>Single-nucleotide polymorphism</subject><issn>0040-5752</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp9kcuOUzEMhiMEEmXgBVhFYsPmMM69XaKKq0ZCGmYf5eQk0wxtUuzTRd-CRyZtEUizYGXJ_vzJ1s_YawHvBIC7JgAh5QASBlBGm2H1hC2EVnKQUsunbAGgYTDOyOfsBdEDAEgDasF-rTcBQ5wTFgpzaZW3zMeA23Tk21CnPkvEM7Yd_37EEnjv8a8Np1B5bsgxUaE51Jj43DhujjVuGu0blsPuzJYp1bnkEv_apxLua6O5RL4L-CMhnU23SOJ2o1-yZzlsKb36U6_Y3ccPd-vPw823T1_W72-GKK1bDaNZagejBOPcKqko3KiUFHbMaRRhXDojsghWywiTcFZlCMmCkaNeWqtX6oq9vWj32H4eEs1-Vyimbf85tQN5qbQyIJfihL55hD60A9Z-XKecsVYZ5TolL1TERoQp-z2W_t_RC_CnjPwlI98z8ueM_EmtLkvU4Xqf8J_6P1u_AWmhlT0</recordid><startdate>20200401</startdate><enddate>20200401</enddate><creator>Looseley, Mark E.</creator><creator>Griffe, Lucie L.</creator><creator>Büttner, Bianca</creator><creator>Wright, Kathryn M.</creator><creator>Bayer, Micha M.</creator><creator>Coulter, Max</creator><creator>Thauvin, Jean-Noël</creator><creator>Middlefell-Williams, Jill</creator><creator>Maluk, Marta</creator><creator>Okpo, Aleksandra</creator><creator>Kettles, Nicola</creator><creator>Werner, Peter</creator><creator>Byrne, Ed</creator><creator>Avrova, Anna</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-3527-9027</orcidid></search><sort><creationdate>20200401</creationdate><title>Characterisation of barley landraces from Syria and Jordan for resistance to rhynchosporium and identification of diagnostic markers for Rrs1Rh4</title><author>Looseley, Mark E. ; Griffe, Lucie L. ; Büttner, Bianca ; Wright, Kathryn M. ; Bayer, Micha M. ; Coulter, Max ; Thauvin, Jean-Noël ; Middlefell-Williams, Jill ; Maluk, Marta ; Okpo, Aleksandra ; Kettles, Nicola ; Werner, Peter ; Byrne, Ed ; Avrova, Anna</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2679-b58470b205779e3c17b33216bfeb1ab8751f1a642c0d1763f0ae6052b4866493</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Agriculture</topic><topic>Alleles</topic><topic>Association analysis</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Cultivars</topic><topic>Genotypes</topic><topic>Genotyping</topic><topic>Life Sciences</topic><topic>Original Article</topic><topic>Phenotypes</topic><topic>Plant Biochemistry</topic><topic>Plant Breeding/Biotechnology</topic><topic>Plant Genetics and Genomics</topic><topic>Rhynchosporium commune</topic><topic>Scald</topic><topic>Single-nucleotide polymorphism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Looseley, Mark E.</creatorcontrib><creatorcontrib>Griffe, Lucie L.</creatorcontrib><creatorcontrib>Büttner, Bianca</creatorcontrib><creatorcontrib>Wright, Kathryn M.</creatorcontrib><creatorcontrib>Bayer, Micha M.</creatorcontrib><creatorcontrib>Coulter, Max</creatorcontrib><creatorcontrib>Thauvin, Jean-Noël</creatorcontrib><creatorcontrib>Middlefell-Williams, Jill</creatorcontrib><creatorcontrib>Maluk, Marta</creatorcontrib><creatorcontrib>Okpo, Aleksandra</creatorcontrib><creatorcontrib>Kettles, Nicola</creatorcontrib><creatorcontrib>Werner, Peter</creatorcontrib><creatorcontrib>Byrne, Ed</creatorcontrib><creatorcontrib>Avrova, Anna</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Theoretical and applied genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Looseley, Mark E.</au><au>Griffe, Lucie L.</au><au>Büttner, Bianca</au><au>Wright, Kathryn M.</au><au>Bayer, Micha M.</au><au>Coulter, Max</au><au>Thauvin, Jean-Noël</au><au>Middlefell-Williams, Jill</au><au>Maluk, Marta</au><au>Okpo, Aleksandra</au><au>Kettles, Nicola</au><au>Werner, Peter</au><au>Byrne, Ed</au><au>Avrova, Anna</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterisation of barley landraces from Syria and Jordan for resistance to rhynchosporium and identification of diagnostic markers for Rrs1Rh4</atitle><jtitle>Theoretical and applied genetics</jtitle><stitle>Theor Appl Genet</stitle><date>2020-04-01</date><risdate>2020</risdate><volume>133</volume><issue>4</issue><spage>1243</spage><epage>1264</epage><pages>1243-1264</pages><issn>0040-5752</issn><eissn>1432-2242</eissn><abstract>Key message
Diagnostic markers for
Rrs1
Rh4
have been identified by testing for associations between SNPs within the
Rrs1
interval in 150 barley genotypes and their resistance to
Rhynchosporium commune
isolates recognised by lines containing
Rrs1.
Rhynchosporium or barley scald, caused by the destructive fungal pathogen
Rhynchosporium commune,
is one of the most economically important diseases of barley in the world. Barley landraces from Syria and Jordan demonstrated high resistance to rhynchosporium in the field. Genotyping of a wide range of barley cultivars and landraces, including known sources of different
Rrs1
genes/alleles, across the
Rrs1
interval, followed by association analysis of this genotypic data with resistance phenotypes to
R. commune
isolates recognised by
Rrs1,
allowed the identification of diagnostic markers for
Rrs1
Rh4
. These markers are specific to
Rrs1
Rh4
and do not detect other
Rrs1
genes/alleles. The
Rrs1
Rh4
diagnostic markers represent a resource that can be exploited by breeders for the sustainable deployment of varietal resistance in new cultivars. Thirteen out of the 55 most resistant Syrian and Jordanian landraces were shown to contain markers specific to
Rrs1
Rh4
. One of these lines came from Jordan, with the remaining 12 lines from different locations in Syria. One of the Syrian landraces containing
Rrs1
Rh4
was also shown to have
Rrs2
. The remaining landraces that performed well against rhynchosporium in the field are likely to contain other resistance genes and represent an important novel resource yet to be exploited by European breeders.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><doi>10.1007/s00122-020-03545-9</doi><tpages>22</tpages><orcidid>https://orcid.org/0000-0002-3527-9027</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0040-5752 |
| ispartof | Theoretical and applied genetics, 2020-04, Vol.133 (4), p.1243-1264 |
| issn | 0040-5752 1432-2242 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2343502819 |
| source | SpringerLink Journals - AutoHoldings |
| subjects | Agriculture Alleles Association analysis Biochemistry Biomedical and Life Sciences Biotechnology Cultivars Genotypes Genotyping Life Sciences Original Article Phenotypes Plant Biochemistry Plant Breeding/Biotechnology Plant Genetics and Genomics Rhynchosporium commune Scald Single-nucleotide polymorphism |
| title | Characterisation of barley landraces from Syria and Jordan for resistance to rhynchosporium and identification of diagnostic markers for Rrs1Rh4 |
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