Effects of temperature on the transcriptomes of pituitary and liver in Golden Pompano Trachinotus blochii
Fish growth can be modulated dynamically through the brain-pituitary-liver regulation axis. In the present study, whole transcriptomes of the pituitary and liver from Golden Pompano Trachinotus blochii were sequenced in seawater at 20 °C (T_low) and 25 °C (T_high). A total of 187,277,583 paired-end...
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| Veröffentlicht in: | Fish physiology and biochemistry 2020-02, Vol.46 (1), p.63-73 |
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| creator | Zhou, Zhi Li, Yanqiang Zhang, Guoqing Ye, Hengzhen Luo, Jian |
| description | Fish growth can be modulated dynamically through the brain-pituitary-liver regulation axis. In the present study, whole transcriptomes of the pituitary and liver from Golden Pompano
Trachinotus blochii
were sequenced in seawater at 20 °C (T_low) and 25 °C (T_high). A total of 187,277,583 paired-end reads were assembled to obtain 100,495 transcripts, corresponding to 83,974 genes. These reads were mapped to
T. blochii
transcripts, and the mapping accuracy ranged from 80.4 to 94.9%. Two lists of differentially expressed genes were obtained by comparisons of pituitary and liver T_low versus T_high groups, comprising 458 and 205 genes, respectively. Of these, 33 differentially expressed genes were common between the two lists. Twelve GO terms were overrepresented for the 458 differentially expressed genes in the pituitary, and it is noteworthy that the GO term
galanin receptor activity
(GO: 0004966) related to the modulation of appetite and metabolism, whose genes made up half of all assembled genes in the term. For the 205 differentially expressed genes in the liver, 19 overrepresented GO terms were mainly related to immune regulation, digestion, and protein metabolism. Among the common differentially expressed genes, there were 32 genes that had identical changing trends in both pituitary and liver comparisons. Furthermore, two GO terms
inorganic diphosphatase activity
and
MHC protein complex
were overrepresented. These results indicate that the brain could regulate pituitary function through galanin signal mechanism and that the metabolism of liver was further optimized to modulate immunity and growth under different temperatures. |
| doi_str_mv | 10.1007/s10695-019-00695-6 |
| format | Article |
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Trachinotus blochii
were sequenced in seawater at 20 °C (T_low) and 25 °C (T_high). A total of 187,277,583 paired-end reads were assembled to obtain 100,495 transcripts, corresponding to 83,974 genes. These reads were mapped to
T. blochii
transcripts, and the mapping accuracy ranged from 80.4 to 94.9%. Two lists of differentially expressed genes were obtained by comparisons of pituitary and liver T_low versus T_high groups, comprising 458 and 205 genes, respectively. Of these, 33 differentially expressed genes were common between the two lists. Twelve GO terms were overrepresented for the 458 differentially expressed genes in the pituitary, and it is noteworthy that the GO term
galanin receptor activity
(GO: 0004966) related to the modulation of appetite and metabolism, whose genes made up half of all assembled genes in the term. For the 205 differentially expressed genes in the liver, 19 overrepresented GO terms were mainly related to immune regulation, digestion, and protein metabolism. Among the common differentially expressed genes, there were 32 genes that had identical changing trends in both pituitary and liver comparisons. Furthermore, two GO terms
inorganic diphosphatase activity
and
MHC protein complex
were overrepresented. These results indicate that the brain could regulate pituitary function through galanin signal mechanism and that the metabolism of liver was further optimized to modulate immunity and growth under different temperatures.</description><identifier>ISSN: 0920-1742</identifier><identifier>EISSN: 1573-5168</identifier><identifier>DOI: 10.1007/s10695-019-00695-6</identifier><identifier>PMID: 31428893</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animal Anatomy ; Animal Biochemistry ; Animal Physiology ; Biomedical and Life Sciences ; Brain ; Fish ; Freshwater & Marine Ecology ; Galanin ; Gene expression ; Gene mapping ; Genes ; Histology ; Immunity ; Immunoregulation ; Life Sciences ; Liver ; Major histocompatibility complex ; Mapping ; Marine fishes ; Metabolism ; Morphology ; Pituitary ; Protein metabolism ; Protein synthesis ; Protein turnover ; Proteins ; Receptors ; Seawater ; Temperature effects ; Trachinotus blochii ; Zoology</subject><ispartof>Fish physiology and biochemistry, 2020-02, Vol.46 (1), p.63-73</ispartof><rights>Springer Nature B.V. 2019</rights><rights>Fish Physiology and Biochemistry is a copyright of Springer, (2019). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-fb2a4bbb8e1db3a2af8401de83fac0a9402135a438406bde69034320a292e2613</citedby><cites>FETCH-LOGICAL-c375t-fb2a4bbb8e1db3a2af8401de83fac0a9402135a438406bde69034320a292e2613</cites><orcidid>0000-0002-2339-284X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10695-019-00695-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10695-019-00695-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,777,781,27905,27906,41469,42538,51300</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31428893$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhou, Zhi</creatorcontrib><creatorcontrib>Li, Yanqiang</creatorcontrib><creatorcontrib>Zhang, Guoqing</creatorcontrib><creatorcontrib>Ye, Hengzhen</creatorcontrib><creatorcontrib>Luo, Jian</creatorcontrib><title>Effects of temperature on the transcriptomes of pituitary and liver in Golden Pompano Trachinotus blochii</title><title>Fish physiology and biochemistry</title><addtitle>Fish Physiol Biochem</addtitle><addtitle>Fish Physiol Biochem</addtitle><description>Fish growth can be modulated dynamically through the brain-pituitary-liver regulation axis. In the present study, whole transcriptomes of the pituitary and liver from Golden Pompano
Trachinotus blochii
were sequenced in seawater at 20 °C (T_low) and 25 °C (T_high). A total of 187,277,583 paired-end reads were assembled to obtain 100,495 transcripts, corresponding to 83,974 genes. These reads were mapped to
T. blochii
transcripts, and the mapping accuracy ranged from 80.4 to 94.9%. Two lists of differentially expressed genes were obtained by comparisons of pituitary and liver T_low versus T_high groups, comprising 458 and 205 genes, respectively. Of these, 33 differentially expressed genes were common between the two lists. Twelve GO terms were overrepresented for the 458 differentially expressed genes in the pituitary, and it is noteworthy that the GO term
galanin receptor activity
(GO: 0004966) related to the modulation of appetite and metabolism, whose genes made up half of all assembled genes in the term. For the 205 differentially expressed genes in the liver, 19 overrepresented GO terms were mainly related to immune regulation, digestion, and protein metabolism. Among the common differentially expressed genes, there were 32 genes that had identical changing trends in both pituitary and liver comparisons. Furthermore, two GO terms
inorganic diphosphatase activity
and
MHC protein complex
were overrepresented. These results indicate that the brain could regulate pituitary function through galanin signal mechanism and that the metabolism of liver was further optimized to modulate immunity and growth under different temperatures.</description><subject>Animal Anatomy</subject><subject>Animal Biochemistry</subject><subject>Animal Physiology</subject><subject>Biomedical and Life Sciences</subject><subject>Brain</subject><subject>Fish</subject><subject>Freshwater & Marine Ecology</subject><subject>Galanin</subject><subject>Gene expression</subject><subject>Gene mapping</subject><subject>Genes</subject><subject>Histology</subject><subject>Immunity</subject><subject>Immunoregulation</subject><subject>Life Sciences</subject><subject>Liver</subject><subject>Major histocompatibility complex</subject><subject>Mapping</subject><subject>Marine fishes</subject><subject>Metabolism</subject><subject>Morphology</subject><subject>Pituitary</subject><subject>Protein metabolism</subject><subject>Protein synthesis</subject><subject>Protein turnover</subject><subject>Proteins</subject><subject>Receptors</subject><subject>Seawater</subject><subject>Temperature effects</subject><subject>Trachinotus 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Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhou, Zhi</au><au>Li, Yanqiang</au><au>Zhang, Guoqing</au><au>Ye, Hengzhen</au><au>Luo, Jian</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Effects of temperature on the transcriptomes of pituitary and liver in Golden Pompano Trachinotus blochii</atitle><jtitle>Fish physiology and biochemistry</jtitle><stitle>Fish Physiol Biochem</stitle><addtitle>Fish Physiol Biochem</addtitle><date>2020-02-01</date><risdate>2020</risdate><volume>46</volume><issue>1</issue><spage>63</spage><epage>73</epage><pages>63-73</pages><issn>0920-1742</issn><eissn>1573-5168</eissn><abstract>Fish growth can be modulated dynamically through the brain-pituitary-liver regulation axis. In the present study, whole transcriptomes of the pituitary and liver from Golden Pompano
Trachinotus blochii
were sequenced in seawater at 20 °C (T_low) and 25 °C (T_high). A total of 187,277,583 paired-end reads were assembled to obtain 100,495 transcripts, corresponding to 83,974 genes. These reads were mapped to
T. blochii
transcripts, and the mapping accuracy ranged from 80.4 to 94.9%. Two lists of differentially expressed genes were obtained by comparisons of pituitary and liver T_low versus T_high groups, comprising 458 and 205 genes, respectively. Of these, 33 differentially expressed genes were common between the two lists. Twelve GO terms were overrepresented for the 458 differentially expressed genes in the pituitary, and it is noteworthy that the GO term
galanin receptor activity
(GO: 0004966) related to the modulation of appetite and metabolism, whose genes made up half of all assembled genes in the term. For the 205 differentially expressed genes in the liver, 19 overrepresented GO terms were mainly related to immune regulation, digestion, and protein metabolism. Among the common differentially expressed genes, there were 32 genes that had identical changing trends in both pituitary and liver comparisons. Furthermore, two GO terms
inorganic diphosphatase activity
and
MHC protein complex
were overrepresented. These results indicate that the brain could regulate pituitary function through galanin signal mechanism and that the metabolism of liver was further optimized to modulate immunity and growth under different temperatures.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>31428893</pmid><doi>10.1007/s10695-019-00695-6</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-2339-284X</orcidid></addata></record> |
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| subjects | Animal Anatomy Animal Biochemistry Animal Physiology Biomedical and Life Sciences Brain Fish Freshwater & Marine Ecology Galanin Gene expression Gene mapping Genes Histology Immunity Immunoregulation Life Sciences Liver Major histocompatibility complex Mapping Marine fishes Metabolism Morphology Pituitary Protein metabolism Protein synthesis Protein turnover Proteins Receptors Seawater Temperature effects Trachinotus blochii Zoology |
| title | Effects of temperature on the transcriptomes of pituitary and liver in Golden Pompano Trachinotus blochii |
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