Machine learning-based radiomics strategy for prediction of cell proliferation in non-small cell lung cancer
•Lung cancer is the leading cause of cancer-related deaths worldwide.•Ki-67 nucleoprotein is a key marker that is associated with cell proliferation and tumour heterogeneity.•Advanced radiomic features can capture more information than subjective imaging features.•Machine learning-based CT radiomics...
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Veröffentlicht in: | European journal of radiology 2019-09, Vol.118, p.32-37 |
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container_title | European journal of radiology |
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creator | Gu, Qianbiao Feng, Zhichao Liang, Qi Li, Meijiao Deng, Jiao Ma, Mengtian Wang, Wei Liu, Jianbin Liu, Peng Rong, Pengfei |
description | •Lung cancer is the leading cause of cancer-related deaths worldwide.•Ki-67 nucleoprotein is a key marker that is associated with cell proliferation and tumour heterogeneity.•Advanced radiomic features can capture more information than subjective imaging features.•Machine learning-based CT radiomics classifiers can noninvasively predict the expression level of Ki-67 in NSCLC.•Random forest classifier can produce good classification results.
To explore the feasibility and performance of machine learning-based radiomics classifier to predict the cell proliferation(Ki-67)in non-small cell lung cancer (NSCLC).
245 histopathological confirmed NSCLC patients who underwent CT scans were retrospectively included. The Ki-67 proliferation index (Ki-67 PI) were measured within 2 weeks after CT scans. A lesion volume of interest (VOI) was manually delineated and radiomics features were extracted by MaZda software from CT images. A random forest feature selection algorithm (RFFS) was used to reduce features. Six kinds of machine learning methods were used to establish radiomics classifiers, subjective imaging feature classifiers and combined classifiers, respectively. The performance of these classifiers was evaluated by the receiver operating characteristic curve (ROC) and compared with Delong test.
103 radiomics features were extracted and 20 optimal features were selected using RFFS. Among the radiomics classifiers established by six machine learning methods, random forest-based radiomics classifier achieved the best performance (AUC = 0.776) in predicting the Ki-67 expression level with sensitivity and specificity of 0.726 and 0.661, which was better than that of subjective imaging classifiers (AUC = 0.625, P 0.05), with sensitivity and specificity of 0.752 and 0.633.
The machine learning-based CT radiomics classifier in NSCLC can facilitate the prediction of the expression level of Ki-67 and provide a novel non-invasive strategy for assessing the cell proliferation. |
doi_str_mv | 10.1016/j.ejrad.2019.06.025 |
format | Article |
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To explore the feasibility and performance of machine learning-based radiomics classifier to predict the cell proliferation(Ki-67)in non-small cell lung cancer (NSCLC).
245 histopathological confirmed NSCLC patients who underwent CT scans were retrospectively included. The Ki-67 proliferation index (Ki-67 PI) were measured within 2 weeks after CT scans. A lesion volume of interest (VOI) was manually delineated and radiomics features were extracted by MaZda software from CT images. A random forest feature selection algorithm (RFFS) was used to reduce features. Six kinds of machine learning methods were used to establish radiomics classifiers, subjective imaging feature classifiers and combined classifiers, respectively. The performance of these classifiers was evaluated by the receiver operating characteristic curve (ROC) and compared with Delong test.
103 radiomics features were extracted and 20 optimal features were selected using RFFS. Among the radiomics classifiers established by six machine learning methods, random forest-based radiomics classifier achieved the best performance (AUC = 0.776) in predicting the Ki-67 expression level with sensitivity and specificity of 0.726 and 0.661, which was better than that of subjective imaging classifiers (AUC = 0.625, P < 0.05). However, the combined classifiers did not improve the predictive performance (AUC = 0.780, P > 0.05), with sensitivity and specificity of 0.752 and 0.633.
The machine learning-based CT radiomics classifier in NSCLC can facilitate the prediction of the expression level of Ki-67 and provide a novel non-invasive strategy for assessing the cell proliferation.</description><identifier>ISSN: 0720-048X</identifier><identifier>EISSN: 1872-7727</identifier><identifier>DOI: 10.1016/j.ejrad.2019.06.025</identifier><identifier>PMID: 31439255</identifier><language>eng</language><publisher>Ireland: Elsevier B.V</publisher><subject>Adult ; Aged ; Aged, 80 and over ; Algorithms ; Carcinoma, Non-Small-Cell Lung - diagnostic imaging ; Carcinoma, Non-Small-Cell Lung - pathology ; Cell Proliferation ; Female ; Humans ; Ki-67 ; Lung - diagnostic imaging ; Lung - pathology ; Lung Neoplasms - diagnostic imaging ; Lung Neoplasms - pathology ; Machine Learning ; Male ; Middle Aged ; Non-small cell lung cancer (NSCLC) ; Radiographic Image Interpretation, Computer-Assisted - methods ; Radiomics ; Retrospective Studies ; ROC Curve ; Sensitivity and Specificity ; Tomography, X-Ray Computed - methods</subject><ispartof>European journal of radiology, 2019-09, Vol.118, p.32-37</ispartof><rights>2019 Elsevier B.V.</rights><rights>Copyright © 2019 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c425t-8a1d1855e8d49c4ac63442bb26a7d5793a465db01a791c41fcdd6ebb1f270d783</citedby><cites>FETCH-LOGICAL-c425t-8a1d1855e8d49c4ac63442bb26a7d5793a465db01a791c41fcdd6ebb1f270d783</cites><orcidid>0000-0002-2545-3175 ; 0000-0001-6853-7785</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0720048X19302293$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65534</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31439255$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gu, Qianbiao</creatorcontrib><creatorcontrib>Feng, Zhichao</creatorcontrib><creatorcontrib>Liang, Qi</creatorcontrib><creatorcontrib>Li, Meijiao</creatorcontrib><creatorcontrib>Deng, Jiao</creatorcontrib><creatorcontrib>Ma, Mengtian</creatorcontrib><creatorcontrib>Wang, Wei</creatorcontrib><creatorcontrib>Liu, Jianbin</creatorcontrib><creatorcontrib>Liu, Peng</creatorcontrib><creatorcontrib>Rong, Pengfei</creatorcontrib><title>Machine learning-based radiomics strategy for prediction of cell proliferation in non-small cell lung cancer</title><title>European journal of radiology</title><addtitle>Eur J Radiol</addtitle><description>•Lung cancer is the leading cause of cancer-related deaths worldwide.•Ki-67 nucleoprotein is a key marker that is associated with cell proliferation and tumour heterogeneity.•Advanced radiomic features can capture more information than subjective imaging features.•Machine learning-based CT radiomics classifiers can noninvasively predict the expression level of Ki-67 in NSCLC.•Random forest classifier can produce good classification results.
To explore the feasibility and performance of machine learning-based radiomics classifier to predict the cell proliferation(Ki-67)in non-small cell lung cancer (NSCLC).
245 histopathological confirmed NSCLC patients who underwent CT scans were retrospectively included. The Ki-67 proliferation index (Ki-67 PI) were measured within 2 weeks after CT scans. A lesion volume of interest (VOI) was manually delineated and radiomics features were extracted by MaZda software from CT images. A random forest feature selection algorithm (RFFS) was used to reduce features. Six kinds of machine learning methods were used to establish radiomics classifiers, subjective imaging feature classifiers and combined classifiers, respectively. The performance of these classifiers was evaluated by the receiver operating characteristic curve (ROC) and compared with Delong test.
103 radiomics features were extracted and 20 optimal features were selected using RFFS. Among the radiomics classifiers established by six machine learning methods, random forest-based radiomics classifier achieved the best performance (AUC = 0.776) in predicting the Ki-67 expression level with sensitivity and specificity of 0.726 and 0.661, which was better than that of subjective imaging classifiers (AUC = 0.625, P < 0.05). However, the combined classifiers did not improve the predictive performance (AUC = 0.780, P > 0.05), with sensitivity and specificity of 0.752 and 0.633.
The machine learning-based CT radiomics classifier in NSCLC can facilitate the prediction of the expression level of Ki-67 and provide a novel non-invasive strategy for assessing the cell proliferation.</description><subject>Adult</subject><subject>Aged</subject><subject>Aged, 80 and over</subject><subject>Algorithms</subject><subject>Carcinoma, Non-Small-Cell Lung - diagnostic imaging</subject><subject>Carcinoma, Non-Small-Cell Lung - pathology</subject><subject>Cell Proliferation</subject><subject>Female</subject><subject>Humans</subject><subject>Ki-67</subject><subject>Lung - diagnostic imaging</subject><subject>Lung - pathology</subject><subject>Lung Neoplasms - diagnostic imaging</subject><subject>Lung Neoplasms - pathology</subject><subject>Machine Learning</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Non-small cell lung cancer (NSCLC)</subject><subject>Radiographic Image Interpretation, Computer-Assisted - methods</subject><subject>Radiomics</subject><subject>Retrospective Studies</subject><subject>ROC Curve</subject><subject>Sensitivity and Specificity</subject><subject>Tomography, X-Ray Computed - methods</subject><issn>0720-048X</issn><issn>1872-7727</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kEtLJDEQgIO4OOPjFwiSo5du8-x0HzyIuKvgspdd2FtIJ9Vjhu5kTHoE_70ZRz16Kqj66vUhdE5JTQltrtY1rJNxNSO0q0lTEyYP0JK2ilVKMXWIlkQxUhHR_l-g45zXhBApOnaEFpwK3jEpl2j8beyTD4BHMCn4sKp6k8HhMtjHyduM85zMDKtXPMSENwmct7OPAccBWxjHkoqjH6BAu6wPOMRQ5cmU0nt93IYVtiZYSKfox2DGDGcf8QT9-3n39_a-evzz6-H25rGygsm5ag11tJUSWic6K4xtuBCs71ljlJOq40Y00vWEGtVRK-hgnWug7-nAFHGq5Sfocj-33Pa8hTzryefdMSZA3GbNOKcN4y0nBeV71KaYc4JBb5KfTHrVlOidZr3W75r1TrMmjS6aS9fFx4JtP4H76vn0WoDrPQDlzRcPSWfroThwPoGdtYv-2wVvuxeQzw</recordid><startdate>201909</startdate><enddate>201909</enddate><creator>Gu, Qianbiao</creator><creator>Feng, Zhichao</creator><creator>Liang, Qi</creator><creator>Li, Meijiao</creator><creator>Deng, Jiao</creator><creator>Ma, Mengtian</creator><creator>Wang, Wei</creator><creator>Liu, Jianbin</creator><creator>Liu, Peng</creator><creator>Rong, Pengfei</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-2545-3175</orcidid><orcidid>https://orcid.org/0000-0001-6853-7785</orcidid></search><sort><creationdate>201909</creationdate><title>Machine learning-based radiomics strategy for prediction of cell proliferation in non-small cell lung cancer</title><author>Gu, Qianbiao ; Feng, Zhichao ; Liang, Qi ; Li, Meijiao ; Deng, Jiao ; Ma, Mengtian ; Wang, Wei ; Liu, Jianbin ; Liu, Peng ; Rong, Pengfei</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c425t-8a1d1855e8d49c4ac63442bb26a7d5793a465db01a791c41fcdd6ebb1f270d783</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Aged, 80 and over</topic><topic>Algorithms</topic><topic>Carcinoma, Non-Small-Cell Lung - diagnostic imaging</topic><topic>Carcinoma, Non-Small-Cell Lung - pathology</topic><topic>Cell Proliferation</topic><topic>Female</topic><topic>Humans</topic><topic>Ki-67</topic><topic>Lung - diagnostic imaging</topic><topic>Lung - pathology</topic><topic>Lung Neoplasms - diagnostic imaging</topic><topic>Lung Neoplasms - pathology</topic><topic>Machine Learning</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Non-small cell lung cancer (NSCLC)</topic><topic>Radiographic Image Interpretation, Computer-Assisted - methods</topic><topic>Radiomics</topic><topic>Retrospective Studies</topic><topic>ROC Curve</topic><topic>Sensitivity and Specificity</topic><topic>Tomography, X-Ray Computed - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gu, Qianbiao</creatorcontrib><creatorcontrib>Feng, Zhichao</creatorcontrib><creatorcontrib>Liang, Qi</creatorcontrib><creatorcontrib>Li, Meijiao</creatorcontrib><creatorcontrib>Deng, Jiao</creatorcontrib><creatorcontrib>Ma, Mengtian</creatorcontrib><creatorcontrib>Wang, Wei</creatorcontrib><creatorcontrib>Liu, Jianbin</creatorcontrib><creatorcontrib>Liu, Peng</creatorcontrib><creatorcontrib>Rong, Pengfei</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>European journal of radiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gu, Qianbiao</au><au>Feng, Zhichao</au><au>Liang, Qi</au><au>Li, Meijiao</au><au>Deng, Jiao</au><au>Ma, Mengtian</au><au>Wang, Wei</au><au>Liu, Jianbin</au><au>Liu, Peng</au><au>Rong, Pengfei</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Machine learning-based radiomics strategy for prediction of cell proliferation in non-small cell lung cancer</atitle><jtitle>European journal of radiology</jtitle><addtitle>Eur J Radiol</addtitle><date>2019-09</date><risdate>2019</risdate><volume>118</volume><spage>32</spage><epage>37</epage><pages>32-37</pages><issn>0720-048X</issn><eissn>1872-7727</eissn><abstract>•Lung cancer is the leading cause of cancer-related deaths worldwide.•Ki-67 nucleoprotein is a key marker that is associated with cell proliferation and tumour heterogeneity.•Advanced radiomic features can capture more information than subjective imaging features.•Machine learning-based CT radiomics classifiers can noninvasively predict the expression level of Ki-67 in NSCLC.•Random forest classifier can produce good classification results.
To explore the feasibility and performance of machine learning-based radiomics classifier to predict the cell proliferation(Ki-67)in non-small cell lung cancer (NSCLC).
245 histopathological confirmed NSCLC patients who underwent CT scans were retrospectively included. The Ki-67 proliferation index (Ki-67 PI) were measured within 2 weeks after CT scans. A lesion volume of interest (VOI) was manually delineated and radiomics features were extracted by MaZda software from CT images. A random forest feature selection algorithm (RFFS) was used to reduce features. Six kinds of machine learning methods were used to establish radiomics classifiers, subjective imaging feature classifiers and combined classifiers, respectively. The performance of these classifiers was evaluated by the receiver operating characteristic curve (ROC) and compared with Delong test.
103 radiomics features were extracted and 20 optimal features were selected using RFFS. Among the radiomics classifiers established by six machine learning methods, random forest-based radiomics classifier achieved the best performance (AUC = 0.776) in predicting the Ki-67 expression level with sensitivity and specificity of 0.726 and 0.661, which was better than that of subjective imaging classifiers (AUC = 0.625, P < 0.05). However, the combined classifiers did not improve the predictive performance (AUC = 0.780, P > 0.05), with sensitivity and specificity of 0.752 and 0.633.
The machine learning-based CT radiomics classifier in NSCLC can facilitate the prediction of the expression level of Ki-67 and provide a novel non-invasive strategy for assessing the cell proliferation.</abstract><cop>Ireland</cop><pub>Elsevier B.V</pub><pmid>31439255</pmid><doi>10.1016/j.ejrad.2019.06.025</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0002-2545-3175</orcidid><orcidid>https://orcid.org/0000-0001-6853-7785</orcidid></addata></record> |
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subjects | Adult Aged Aged, 80 and over Algorithms Carcinoma, Non-Small-Cell Lung - diagnostic imaging Carcinoma, Non-Small-Cell Lung - pathology Cell Proliferation Female Humans Ki-67 Lung - diagnostic imaging Lung - pathology Lung Neoplasms - diagnostic imaging Lung Neoplasms - pathology Machine Learning Male Middle Aged Non-small cell lung cancer (NSCLC) Radiographic Image Interpretation, Computer-Assisted - methods Radiomics Retrospective Studies ROC Curve Sensitivity and Specificity Tomography, X-Ray Computed - methods |
title | Machine learning-based radiomics strategy for prediction of cell proliferation in non-small cell lung cancer |
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