New microsatellite markers recognize differences in tandem repeats among four related Gastrodia species (Orchidaceae)
Gastrodia is the most species-rich genus among mycoheterotrophic plants, and is thus an essential taxon to understand the mechanism of species diversification in mycoheterotrophs. In this study, we developed microsatellite markers with high transferability for four Gastrodia species to examine genet...
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| Veröffentlicht in: | Genes & Genetic Systems 2019/10/01, Vol.94(5), pp.225-229 |
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| container_title | Genes & Genetic Systems |
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| creator | Ogaki, Kenji Suetsugu, Kenji Kishikawa, Keiju Kyogoku, Daisuke Shutoh, Kohtaroh Isagi, Yuji Kaneko, Shingo |
| description | Gastrodia is the most species-rich genus among mycoheterotrophic plants, and is thus an essential taxon to understand the mechanism of species diversification in mycoheterotrophs. In this study, we developed microsatellite markers with high transferability for four Gastrodia species to examine genetic differentiation and similarity among species, populations and individuals. The 12 microsatellite markers developed from a G. fontinalis library showed high transferability for the ramets that identified G. nipponica, G. kuroshimensis and G. takeshimensis. In addition to the high transferability of these markers, we observed low allele variation within a sampled population of each species and allele differences among the four species. The 12 markers described here will be useful for investigating the genetic differences among and within the Gastrodia species, which evolved by a limitation of gene flow. |
| doi_str_mv | 10.1266/ggs.19-00025 |
| format | Article |
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In this study, we developed microsatellite markers with high transferability for four Gastrodia species to examine genetic differentiation and similarity among species, populations and individuals. The 12 microsatellite markers developed from a G. fontinalis library showed high transferability for the ramets that identified G. nipponica, G. kuroshimensis and G. takeshimensis. In addition to the high transferability of these markers, we observed low allele variation within a sampled population of each species and allele differences among the four species. The 12 markers described here will be useful for investigating the genetic differences among and within the Gastrodia species, which evolved by a limitation of gene flow.</description><identifier>ISSN: 1341-7568</identifier><identifier>EISSN: 1880-5779</identifier><identifier>DOI: 10.1266/ggs.19-00025</identifier><identifier>PMID: 31813889</identifier><language>eng</language><publisher>Japan: The Genetics Society of Japan</publisher><subject>Alleles ; cross amplification ; Gastrodia - genetics ; Gene flow ; Genetic markers ; genetic variation ; Genome, Plant ; inbreeding ; Ion PGM ; Microsatellite Repeats ; Microsatellites ; mycoheterotrophy ; Population genetics ; Species ; Species Specificity</subject><ispartof>Genes & Genetic Systems, 2019/10/01, Vol.94(5), pp.225-229</ispartof><rights>2019 by The Genetics Society of Japan</rights><rights>Copyright Japan Science and Technology Agency 2019</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c630t-df64167f923022b6f61de7d397a60fad86196bba25ece12ed9c41ab163fcce3e3</citedby><cites>FETCH-LOGICAL-c630t-df64167f923022b6f61de7d397a60fad86196bba25ece12ed9c41ab163fcce3e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,864,1883,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31813889$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ogaki, Kenji</creatorcontrib><creatorcontrib>Suetsugu, Kenji</creatorcontrib><creatorcontrib>Kishikawa, Keiju</creatorcontrib><creatorcontrib>Kyogoku, Daisuke</creatorcontrib><creatorcontrib>Shutoh, Kohtaroh</creatorcontrib><creatorcontrib>Isagi, Yuji</creatorcontrib><creatorcontrib>Kaneko, Shingo</creatorcontrib><creatorcontrib>Fukushima University</creatorcontrib><creatorcontrib>Graduate School of Symbiotic Systems Science and Technology</creatorcontrib><creatorcontrib>Present Address: Research Institute for Food and Agriculture</creatorcontrib><creatorcontrib>Kyoto University</creatorcontrib><creatorcontrib>Graduate School of Science</creatorcontrib><creatorcontrib>Kobe University</creatorcontrib><creatorcontrib>Hokkaido University</creatorcontrib><creatorcontrib>Graduate School of Agriculture</creatorcontrib><creatorcontrib>The Hokkaido University Museum</creatorcontrib><creatorcontrib>Department of Biology</creatorcontrib><creatorcontrib>Ryukoku University</creatorcontrib><title>New microsatellite markers recognize differences in tandem repeats among four related Gastrodia species (Orchidaceae)</title><title>Genes & Genetic Systems</title><addtitle>Genes Genet. Syst.</addtitle><description>Gastrodia is the most species-rich genus among mycoheterotrophic plants, and is thus an essential taxon to understand the mechanism of species diversification in mycoheterotrophs. In this study, we developed microsatellite markers with high transferability for four Gastrodia species to examine genetic differentiation and similarity among species, populations and individuals. The 12 microsatellite markers developed from a G. fontinalis library showed high transferability for the ramets that identified G. nipponica, G. kuroshimensis and G. takeshimensis. In addition to the high transferability of these markers, we observed low allele variation within a sampled population of each species and allele differences among the four species. The 12 markers described here will be useful for investigating the genetic differences among and within the Gastrodia species, which evolved by a limitation of gene flow.</description><subject>Alleles</subject><subject>cross amplification</subject><subject>Gastrodia - genetics</subject><subject>Gene flow</subject><subject>Genetic markers</subject><subject>genetic variation</subject><subject>Genome, Plant</subject><subject>inbreeding</subject><subject>Ion PGM</subject><subject>Microsatellite Repeats</subject><subject>Microsatellites</subject><subject>mycoheterotrophy</subject><subject>Population genetics</subject><subject>Species</subject><subject>Species Specificity</subject><issn>1341-7568</issn><issn>1880-5779</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkU1v1DAQhiMEoqVw44wscSkSKf5IHPtYKliQKnqBs-XY410vibPYiVD59czutovEwTOW5_E7X1X1mtErxqX8sF6XK6ZrSilvn1TnTClat12nn-JdNKzuWqnOqhelbJGgWonn1Zlgigml9Hm1fIPfZIwuT8XOMAxxBjLa_BNyIRnctE7xDxAfQ4AMyUEhMZHZJg8jxndg50LsOKU1CdOS8WlAGU9Wtsx58tGSsgMX8dvlXXab6K0DC-9eVs-CHQq8evAX1Y_Pn77ffKlv71Zfb65vaycFnWsfZMNkFzQXlPNeBsk8dF7ozkoarFeSadn3lrfggHHw2jXM9kyK4BwIEBfV5VF3l6dfC5TZjLE4bNMmmJZiuOBcUdU0CtG3_6FbbChhdXuqFU2nmUbq_ZHaD6xkCGaXI87r3jBq9uswuA7DtDmsA_E3D6JLP4I_wY_zR2B1BDAanR2mNMQE_1K7jUDBe6yBHkR1Q1t0eDg_GC0ayURHUenjUWlbZruGUyqb5-gGONSlG9PuzWN9p6Db2Gwgib-MhbVQ</recordid><startdate>20191001</startdate><enddate>20191001</enddate><creator>Ogaki, Kenji</creator><creator>Suetsugu, Kenji</creator><creator>Kishikawa, Keiju</creator><creator>Kyogoku, Daisuke</creator><creator>Shutoh, Kohtaroh</creator><creator>Isagi, Yuji</creator><creator>Kaneko, Shingo</creator><general>The Genetics Society of Japan</general><general>Japan Science and Technology Agency</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SS</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>NAPCQ</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20191001</creationdate><title>New microsatellite markers recognize differences in tandem repeats among four related Gastrodia species (Orchidaceae)</title><author>Ogaki, Kenji ; 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| source | J-STAGE Free; MEDLINE; DOAJ Directory of Open Access Journals; EZB-FREE-00999 freely available EZB journals |
| subjects | Alleles cross amplification Gastrodia - genetics Gene flow Genetic markers genetic variation Genome, Plant inbreeding Ion PGM Microsatellite Repeats Microsatellites mycoheterotrophy Population genetics Species Species Specificity |
| title | New microsatellite markers recognize differences in tandem repeats among four related Gastrodia species (Orchidaceae) |
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