Differential expression of major genes involved in the biosynthesis of aliphatic glucosinolates in intergeneric Baemoochae (Brassicaceae) and its parents during development
Key message Thus study found the temporal and spatial relationship between production of aliphatic glucosinolate compounds and the expression profile of glucosinolate-related genes during growth and development in radish, Chinese cabbage, and their intergeneric hybrid baemoochae plants. Glucosinolat...
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Veröffentlicht in: | Plant molecular biology 2020, Vol.102 (1-2), p.171-184 |
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creator | Nugroho, Adji Baskoro Dwi Han, Narae Pervitasari, Aditya Nurmalita Kim, Dong-Hwan Kim, Jongkee |
description | Key message
Thus study found the temporal and spatial relationship between production of aliphatic glucosinolate compounds and the expression profile of glucosinolate-related genes during growth and development in radish, Chinese cabbage, and their intergeneric hybrid baemoochae plants.
Glucosinolates (GSLs) are one of major bioactive compounds in
Brassicaceae
plants. GSLs play a role in defense against microbes as well as chemo-preventative activity against cancer, which draw attentions from plant scientists. We investigated the temporal relationship between production of aliphatic Glucosinolate (GSLs) compounds and the expression profile of GSL related genes during growth and development in radish, Chinese cabbage, and their intergeneric hybrid, baemoochae. Over the complete life cycle, Glucoraphasatin (GRH) and glucoraphanin (GRE) predominated in radish, whereas gluconapin (GNP), glucobrassicanapin (GBN), and glucoraphanin (GRA) abounded in Chinese cabbage. Baemoochae contained intermediate levels of all GSLs studied, indicating inheritance from both radish and Chinese cabbage. Expression patterns of
BCAT4
,
CYP79F1
,
CYP83A1
,
UGT74B1
,
GRS1
,
FMOgs
-
ox1
, and
AOP2
genes showed a correlation to their corresponding encoded proteins in radish, Chinese cabbage, and baemoochae. Interestingly, there is a sharp change in gene expression pattern involved in side chain modification, particularly
GRS1
,
FMOgs
-
ox1
, and
AOP2
, among these plants during the vegetative and reproductive stage. For instance, the
GRS1
was strongly expressed during leaf development, while both of
FMOgs
-
ox1
and
AOP2
was manifested high in floral tissues. Furthermore, expression of
GRS1
gene which is responsible for GRH production was predominantly expressed in leaf tissues of radish and baemoochae, whereas it was only slightly detected in Chinese cabbage root tissue, explaining why radish has an abundance of GRH compared to other
Brassica
plants. Altogether, our comprehensive and comparative data proved that aliphatic GSLs biosynthesis is dynamically and precisely regulated in a tissue- and development-dependent manner in
Brassicaceae
family members. |
doi_str_mv | 10.1007/s11103-019-00939-2 |
format | Article |
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Thus study found the temporal and spatial relationship between production of aliphatic glucosinolate compounds and the expression profile of glucosinolate-related genes during growth and development in radish, Chinese cabbage, and their intergeneric hybrid baemoochae plants.
Glucosinolates (GSLs) are one of major bioactive compounds in
Brassicaceae
plants. GSLs play a role in defense against microbes as well as chemo-preventative activity against cancer, which draw attentions from plant scientists. We investigated the temporal relationship between production of aliphatic Glucosinolate (GSLs) compounds and the expression profile of GSL related genes during growth and development in radish, Chinese cabbage, and their intergeneric hybrid, baemoochae. Over the complete life cycle, Glucoraphasatin (GRH) and glucoraphanin (GRE) predominated in radish, whereas gluconapin (GNP), glucobrassicanapin (GBN), and glucoraphanin (GRA) abounded in Chinese cabbage. Baemoochae contained intermediate levels of all GSLs studied, indicating inheritance from both radish and Chinese cabbage. Expression patterns of
BCAT4
,
CYP79F1
,
CYP83A1
,
UGT74B1
,
GRS1
,
FMOgs
-
ox1
, and
AOP2
genes showed a correlation to their corresponding encoded proteins in radish, Chinese cabbage, and baemoochae. Interestingly, there is a sharp change in gene expression pattern involved in side chain modification, particularly
GRS1
,
FMOgs
-
ox1
, and
AOP2
, among these plants during the vegetative and reproductive stage. For instance, the
GRS1
was strongly expressed during leaf development, while both of
FMOgs
-
ox1
and
AOP2
was manifested high in floral tissues. Furthermore, expression of
GRS1
gene which is responsible for GRH production was predominantly expressed in leaf tissues of radish and baemoochae, whereas it was only slightly detected in Chinese cabbage root tissue, explaining why radish has an abundance of GRH compared to other
Brassica
plants. Altogether, our comprehensive and comparative data proved that aliphatic GSLs biosynthesis is dynamically and precisely regulated in a tissue- and development-dependent manner in
Brassicaceae
family members.</description><identifier>ISSN: 0167-4412</identifier><identifier>EISSN: 1573-5028</identifier><identifier>DOI: 10.1007/s11103-019-00939-2</identifier><identifier>PMID: 31792713</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Amino Acid Sequence ; Arabidopsis - genetics ; Bioactive compounds ; Biochemistry ; Biomedical and Life Sciences ; Biosynthesis ; Brassica - genetics ; Brassica - metabolism ; Brassica oleracea ; Brassicaceae ; Gene expression ; Gene Expression Regulation, Plant ; Genes, Plant - genetics ; Glucosinolates ; Glucosinolates - genetics ; Glucosinolates - metabolism ; GRS1 gene ; Heredity ; Imidoesters - metabolism ; Leaves ; Life Cycle Stages ; Life cycles ; Life Sciences ; Mitochondrial Proteins - genetics ; Mitochondrial Proteins - metabolism ; Oximes ; Phylogeny ; Plant Development ; Plant Leaves - genetics ; Plant Leaves - metabolism ; Plant Pathology ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plant Sciences ; Plant tissues ; Plants, Genetically Modified - genetics ; Plants, Genetically Modified - metabolism ; Sulfoxides ; Transcriptome</subject><ispartof>Plant molecular biology, 2020, Vol.102 (1-2), p.171-184</ispartof><rights>Springer Nature B.V. 2019</rights><rights>Plant Molecular Biology is a copyright of Springer, (2019). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-1112ffb5aa0f6e8789220159ca52ba4730c8097d34c0a0dc8bca49a365d46da43</citedby><cites>FETCH-LOGICAL-c375t-1112ffb5aa0f6e8789220159ca52ba4730c8097d34c0a0dc8bca49a365d46da43</cites><orcidid>0000-0003-3348-4948</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11103-019-00939-2$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11103-019-00939-2$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31792713$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nugroho, Adji Baskoro Dwi</creatorcontrib><creatorcontrib>Han, Narae</creatorcontrib><creatorcontrib>Pervitasari, Aditya Nurmalita</creatorcontrib><creatorcontrib>Kim, Dong-Hwan</creatorcontrib><creatorcontrib>Kim, Jongkee</creatorcontrib><title>Differential expression of major genes involved in the biosynthesis of aliphatic glucosinolates in intergeneric Baemoochae (Brassicaceae) and its parents during development</title><title>Plant molecular biology</title><addtitle>Plant Mol Biol</addtitle><addtitle>Plant Mol Biol</addtitle><description>Key message
Thus study found the temporal and spatial relationship between production of aliphatic glucosinolate compounds and the expression profile of glucosinolate-related genes during growth and development in radish, Chinese cabbage, and their intergeneric hybrid baemoochae plants.
Glucosinolates (GSLs) are one of major bioactive compounds in
Brassicaceae
plants. GSLs play a role in defense against microbes as well as chemo-preventative activity against cancer, which draw attentions from plant scientists. We investigated the temporal relationship between production of aliphatic Glucosinolate (GSLs) compounds and the expression profile of GSL related genes during growth and development in radish, Chinese cabbage, and their intergeneric hybrid, baemoochae. Over the complete life cycle, Glucoraphasatin (GRH) and glucoraphanin (GRE) predominated in radish, whereas gluconapin (GNP), glucobrassicanapin (GBN), and glucoraphanin (GRA) abounded in Chinese cabbage. Baemoochae contained intermediate levels of all GSLs studied, indicating inheritance from both radish and Chinese cabbage. Expression patterns of
BCAT4
,
CYP79F1
,
CYP83A1
,
UGT74B1
,
GRS1
,
FMOgs
-
ox1
, and
AOP2
genes showed a correlation to their corresponding encoded proteins in radish, Chinese cabbage, and baemoochae. Interestingly, there is a sharp change in gene expression pattern involved in side chain modification, particularly
GRS1
,
FMOgs
-
ox1
, and
AOP2
, among these plants during the vegetative and reproductive stage. For instance, the
GRS1
was strongly expressed during leaf development, while both of
FMOgs
-
ox1
and
AOP2
was manifested high in floral tissues. Furthermore, expression of
GRS1
gene which is responsible for GRH production was predominantly expressed in leaf tissues of radish and baemoochae, whereas it was only slightly detected in Chinese cabbage root tissue, explaining why radish has an abundance of GRH compared to other
Brassica
plants. Altogether, our comprehensive and comparative data proved that aliphatic GSLs biosynthesis is dynamically and precisely regulated in a tissue- and development-dependent manner in
Brassicaceae
family members.</description><subject>Amino Acid Sequence</subject><subject>Arabidopsis - genetics</subject><subject>Bioactive compounds</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biosynthesis</subject><subject>Brassica - genetics</subject><subject>Brassica - metabolism</subject><subject>Brassica oleracea</subject><subject>Brassicaceae</subject><subject>Gene expression</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes, Plant - genetics</subject><subject>Glucosinolates</subject><subject>Glucosinolates - genetics</subject><subject>Glucosinolates - metabolism</subject><subject>GRS1 gene</subject><subject>Heredity</subject><subject>Imidoesters - metabolism</subject><subject>Leaves</subject><subject>Life Cycle Stages</subject><subject>Life cycles</subject><subject>Life Sciences</subject><subject>Mitochondrial Proteins - genetics</subject><subject>Mitochondrial Proteins - metabolism</subject><subject>Oximes</subject><subject>Phylogeny</subject><subject>Plant Development</subject><subject>Plant Leaves - genetics</subject><subject>Plant Leaves - metabolism</subject><subject>Plant Pathology</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Plant Sciences</subject><subject>Plant tissues</subject><subject>Plants, Genetically Modified - genetics</subject><subject>Plants, Genetically Modified - metabolism</subject><subject>Sulfoxides</subject><subject>Transcriptome</subject><issn>0167-4412</issn><issn>1573-5028</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp9kcFu1DAQhi0EotvCC3BAlri0h8DYTuLkSEtbkCpxgXM0cSa7XiV2sJMVfSceEqfbgsQByZJH9vf_M5qfsTcC3gsA_SEKIUBlIOoMoFZ1Jp-xjSi0ygqQ1XO2AVHqLM-FPGGnMe4BkkyVL9mJErqWWqgN-_XJ9j0FcrPFgdPPKVCM1jvuez7i3ge-JUeRW3fww4G6VPB5R7y1Pt67VEUbVxYHO-1wtoZvh8X4aJ0fcH4QpjNTWG1C-r5EGr03OyR-fhkwNTNoCOmCo0vuc-QTruNE3i3Bui3v6ECDn8b09oq96HGI9PrxPmPfb66_XX3O7r7efrn6eJcZpYs5S2uRfd8WiNCXVOmqlhJEURssZIu5VmAqqHWncgMInalag3mNqiy6vOwwV2fs_Og7Bf9joTg3o42GhgEd-SU2Ukmo0vqqIqHv_kH3fgkuTZeoXKlaS5CJkkfKBB9joL6Zgh0x3DcCmjXL5phlk7JsHrJsVtHbR-ulHan7I3kKLwHqCMRp3RSFv73_Y_sbTRutZA</recordid><startdate>2020</startdate><enddate>2020</enddate><creator>Nugroho, Adji Baskoro Dwi</creator><creator>Han, Narae</creator><creator>Pervitasari, Aditya Nurmalita</creator><creator>Kim, Dong-Hwan</creator><creator>Kim, Jongkee</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-3348-4948</orcidid></search><sort><creationdate>2020</creationdate><title>Differential expression of major genes involved in the biosynthesis of aliphatic glucosinolates in intergeneric Baemoochae (Brassicaceae) and its parents during development</title><author>Nugroho, Adji Baskoro Dwi ; Han, Narae ; Pervitasari, Aditya Nurmalita ; Kim, Dong-Hwan ; Kim, Jongkee</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-1112ffb5aa0f6e8789220159ca52ba4730c8097d34c0a0dc8bca49a365d46da43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Amino Acid Sequence</topic><topic>Arabidopsis - genetics</topic><topic>Bioactive compounds</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biosynthesis</topic><topic>Brassica - genetics</topic><topic>Brassica - metabolism</topic><topic>Brassica oleracea</topic><topic>Brassicaceae</topic><topic>Gene expression</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes, Plant - genetics</topic><topic>Glucosinolates</topic><topic>Glucosinolates - genetics</topic><topic>Glucosinolates - metabolism</topic><topic>GRS1 gene</topic><topic>Heredity</topic><topic>Imidoesters - metabolism</topic><topic>Leaves</topic><topic>Life Cycle Stages</topic><topic>Life cycles</topic><topic>Life Sciences</topic><topic>Mitochondrial Proteins - genetics</topic><topic>Mitochondrial Proteins - metabolism</topic><topic>Oximes</topic><topic>Phylogeny</topic><topic>Plant Development</topic><topic>Plant Leaves - genetics</topic><topic>Plant Leaves - metabolism</topic><topic>Plant Pathology</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Plant Sciences</topic><topic>Plant tissues</topic><topic>Plants, Genetically Modified - genetics</topic><topic>Plants, Genetically Modified - metabolism</topic><topic>Sulfoxides</topic><topic>Transcriptome</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nugroho, Adji Baskoro Dwi</creatorcontrib><creatorcontrib>Han, Narae</creatorcontrib><creatorcontrib>Pervitasari, Aditya Nurmalita</creatorcontrib><creatorcontrib>Kim, Dong-Hwan</creatorcontrib><creatorcontrib>Kim, Jongkee</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Plant molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nugroho, Adji Baskoro Dwi</au><au>Han, Narae</au><au>Pervitasari, Aditya Nurmalita</au><au>Kim, Dong-Hwan</au><au>Kim, Jongkee</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Differential expression of major genes involved in the biosynthesis of aliphatic glucosinolates in intergeneric Baemoochae (Brassicaceae) and its parents during development</atitle><jtitle>Plant molecular biology</jtitle><stitle>Plant Mol Biol</stitle><addtitle>Plant Mol Biol</addtitle><date>2020</date><risdate>2020</risdate><volume>102</volume><issue>1-2</issue><spage>171</spage><epage>184</epage><pages>171-184</pages><issn>0167-4412</issn><eissn>1573-5028</eissn><abstract>Key message
Thus study found the temporal and spatial relationship between production of aliphatic glucosinolate compounds and the expression profile of glucosinolate-related genes during growth and development in radish, Chinese cabbage, and their intergeneric hybrid baemoochae plants.
Glucosinolates (GSLs) are one of major bioactive compounds in
Brassicaceae
plants. GSLs play a role in defense against microbes as well as chemo-preventative activity against cancer, which draw attentions from plant scientists. We investigated the temporal relationship between production of aliphatic Glucosinolate (GSLs) compounds and the expression profile of GSL related genes during growth and development in radish, Chinese cabbage, and their intergeneric hybrid, baemoochae. Over the complete life cycle, Glucoraphasatin (GRH) and glucoraphanin (GRE) predominated in radish, whereas gluconapin (GNP), glucobrassicanapin (GBN), and glucoraphanin (GRA) abounded in Chinese cabbage. Baemoochae contained intermediate levels of all GSLs studied, indicating inheritance from both radish and Chinese cabbage. Expression patterns of
BCAT4
,
CYP79F1
,
CYP83A1
,
UGT74B1
,
GRS1
,
FMOgs
-
ox1
, and
AOP2
genes showed a correlation to their corresponding encoded proteins in radish, Chinese cabbage, and baemoochae. Interestingly, there is a sharp change in gene expression pattern involved in side chain modification, particularly
GRS1
,
FMOgs
-
ox1
, and
AOP2
, among these plants during the vegetative and reproductive stage. For instance, the
GRS1
was strongly expressed during leaf development, while both of
FMOgs
-
ox1
and
AOP2
was manifested high in floral tissues. Furthermore, expression of
GRS1
gene which is responsible for GRH production was predominantly expressed in leaf tissues of radish and baemoochae, whereas it was only slightly detected in Chinese cabbage root tissue, explaining why radish has an abundance of GRH compared to other
Brassica
plants. Altogether, our comprehensive and comparative data proved that aliphatic GSLs biosynthesis is dynamically and precisely regulated in a tissue- and development-dependent manner in
Brassicaceae
family members.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>31792713</pmid><doi>10.1007/s11103-019-00939-2</doi><tpages>14</tpages><orcidid>https://orcid.org/0000-0003-3348-4948</orcidid></addata></record> |
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subjects | Amino Acid Sequence Arabidopsis - genetics Bioactive compounds Biochemistry Biomedical and Life Sciences Biosynthesis Brassica - genetics Brassica - metabolism Brassica oleracea Brassicaceae Gene expression Gene Expression Regulation, Plant Genes, Plant - genetics Glucosinolates Glucosinolates - genetics Glucosinolates - metabolism GRS1 gene Heredity Imidoesters - metabolism Leaves Life Cycle Stages Life cycles Life Sciences Mitochondrial Proteins - genetics Mitochondrial Proteins - metabolism Oximes Phylogeny Plant Development Plant Leaves - genetics Plant Leaves - metabolism Plant Pathology Plant Proteins - genetics Plant Proteins - metabolism Plant Sciences Plant tissues Plants, Genetically Modified - genetics Plants, Genetically Modified - metabolism Sulfoxides Transcriptome |
title | Differential expression of major genes involved in the biosynthesis of aliphatic glucosinolates in intergeneric Baemoochae (Brassicaceae) and its parents during development |
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