Thaumatin-like protein kinases: Molecular characterization and transcriptional profiling in five cereal crops
•A total of 28 TLPK genes were identified in the genome of five cereal crops.•Paralogous analysis suggested the role of duplication events (DEs) in the evolution of TLPK genes in cereals.•Tissue specific expression suggested their role in both vegetative and reproductive tissue development.•Modulate...
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Veröffentlicht in: | Plant science (Limerick) 2020-01, Vol.290, p.110317-110317, Article 110317 |
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creator | Sharma, Alok Shumayla Tyagi, Shivi Alok, Anshu Singh, Kashmir Upadhyay, Santosh Kumar |
description | •A total of 28 TLPK genes were identified in the genome of five cereal crops.•Paralogous analysis suggested the role of duplication events (DEs) in the evolution of TLPK genes in cereals.•Tissue specific expression suggested their role in both vegetative and reproductive tissue development.•Modulated expression of TaTLPKs in the presence of biotic and abiotic stresses in T. aestivum suggested their roles in stress response.•Co-expression analysis showed interaction of TLPKs with various development and stress related genes.
Thaumatin-like protein kinases (TLPKs) are defense related proteins having antimicrobial property. Herein, we identified two TLPKs in the genome of Brachypodium distachyon and Oryza sativa, four in Hordeum vulgare and Sorghum bicolor, and 16 in Triticum aestivum. All the TLPKs were located at only one chromosome in each plant except T. aestivum, where they were located on chromosome 2 and chromosome 3. Paralogous analysis suggested the occurrence of one duplication event (DE) in each B. distachyon and O. sativa, two in H. vulgare while four DEs in T. aestivum genome during the evolution of TLPKs. The majority of TLPKs were intron less, while a few contains one or two introns. The introns were found in each 0, 1 and 2 phase. Protein structure analysis suggested the occurrence of a thaumatin and a kinase domain with a transmembrane (TM) helix in each TLPK. Further, a thaumatin family signature motif "GX[GF]XCXT[GA]DCX(1,2)GX(2,3)C", a "REDDD" motif and 16 cysteine residues were found conserved in the majority of TLPKs. Expression analysis indicated variable expression of TLPKs in various tissues of different cereal crops. They were high expressing in reproductive tissues in B. distachyon, while in leaves in T. aestivum. Modulated expression of TaTLPKs in the presence of fungal pathogen, and heat, drought and salt stress in T. aestivum suggested their roles in stress response. Co-expression analysis showed interaction of TLPKs with various development and stress related genes. The results indicated diverse roles of TLPKs, which can be utilized for the development of eco-friendly pest resistant crops in future. |
doi_str_mv | 10.1016/j.plantsci.2019.110317 |
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Thaumatin-like protein kinases (TLPKs) are defense related proteins having antimicrobial property. Herein, we identified two TLPKs in the genome of Brachypodium distachyon and Oryza sativa, four in Hordeum vulgare and Sorghum bicolor, and 16 in Triticum aestivum. All the TLPKs were located at only one chromosome in each plant except T. aestivum, where they were located on chromosome 2 and chromosome 3. Paralogous analysis suggested the occurrence of one duplication event (DE) in each B. distachyon and O. sativa, two in H. vulgare while four DEs in T. aestivum genome during the evolution of TLPKs. The majority of TLPKs were intron less, while a few contains one or two introns. The introns were found in each 0, 1 and 2 phase. Protein structure analysis suggested the occurrence of a thaumatin and a kinase domain with a transmembrane (TM) helix in each TLPK. Further, a thaumatin family signature motif "GX[GF]XCXT[GA]DCX(1,2)GX(2,3)C", a "REDDD" motif and 16 cysteine residues were found conserved in the majority of TLPKs. Expression analysis indicated variable expression of TLPKs in various tissues of different cereal crops. They were high expressing in reproductive tissues in B. distachyon, while in leaves in T. aestivum. Modulated expression of TaTLPKs in the presence of fungal pathogen, and heat, drought and salt stress in T. aestivum suggested their roles in stress response. Co-expression analysis showed interaction of TLPKs with various development and stress related genes. The results indicated diverse roles of TLPKs, which can be utilized for the development of eco-friendly pest resistant crops in future.</description><identifier>ISSN: 0168-9452</identifier><identifier>EISSN: 1873-2259</identifier><identifier>DOI: 10.1016/j.plantsci.2019.110317</identifier><identifier>PMID: 31779910</identifier><language>eng</language><publisher>Ireland: Elsevier B.V</publisher><subject>Amino Acid Sequence ; Co-expression ; Crops, Agricultural - genetics ; Crops, Agricultural - metabolism ; Duplication event ; Expression analysis ; Gene Expression Profiling ; Pathogenesis-related 5 ; Phylogeny ; Plant Proteins - chemistry ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Protein Kinases - chemistry ; Protein Kinases - genetics ; Protein Kinases - metabolism ; Sequence Alignment ; Thaumatin-like protein kinases ; Transcription, Genetic</subject><ispartof>Plant science (Limerick), 2020-01, Vol.290, p.110317-110317, Article 110317</ispartof><rights>2019 Elsevier B.V.</rights><rights>Copyright © 2019 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c368t-8397d561adba831ec08aee2bf491afa85b40deea1a9d31f529e45098abaa83cc3</citedby><cites>FETCH-LOGICAL-c368t-8397d561adba831ec08aee2bf491afa85b40deea1a9d31f529e45098abaa83cc3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0168945219310751$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65534</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31779910$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sharma, Alok</creatorcontrib><creatorcontrib>Shumayla</creatorcontrib><creatorcontrib>Tyagi, Shivi</creatorcontrib><creatorcontrib>Alok, Anshu</creatorcontrib><creatorcontrib>Singh, Kashmir</creatorcontrib><creatorcontrib>Upadhyay, Santosh Kumar</creatorcontrib><title>Thaumatin-like protein kinases: Molecular characterization and transcriptional profiling in five cereal crops</title><title>Plant science (Limerick)</title><addtitle>Plant Sci</addtitle><description>•A total of 28 TLPK genes were identified in the genome of five cereal crops.•Paralogous analysis suggested the role of duplication events (DEs) in the evolution of TLPK genes in cereals.•Tissue specific expression suggested their role in both vegetative and reproductive tissue development.•Modulated expression of TaTLPKs in the presence of biotic and abiotic stresses in T. aestivum suggested their roles in stress response.•Co-expression analysis showed interaction of TLPKs with various development and stress related genes.
Thaumatin-like protein kinases (TLPKs) are defense related proteins having antimicrobial property. Herein, we identified two TLPKs in the genome of Brachypodium distachyon and Oryza sativa, four in Hordeum vulgare and Sorghum bicolor, and 16 in Triticum aestivum. All the TLPKs were located at only one chromosome in each plant except T. aestivum, where they were located on chromosome 2 and chromosome 3. Paralogous analysis suggested the occurrence of one duplication event (DE) in each B. distachyon and O. sativa, two in H. vulgare while four DEs in T. aestivum genome during the evolution of TLPKs. The majority of TLPKs were intron less, while a few contains one or two introns. The introns were found in each 0, 1 and 2 phase. Protein structure analysis suggested the occurrence of a thaumatin and a kinase domain with a transmembrane (TM) helix in each TLPK. Further, a thaumatin family signature motif "GX[GF]XCXT[GA]DCX(1,2)GX(2,3)C", a "REDDD" motif and 16 cysteine residues were found conserved in the majority of TLPKs. Expression analysis indicated variable expression of TLPKs in various tissues of different cereal crops. They were high expressing in reproductive tissues in B. distachyon, while in leaves in T. aestivum. Modulated expression of TaTLPKs in the presence of fungal pathogen, and heat, drought and salt stress in T. aestivum suggested their roles in stress response. Co-expression analysis showed interaction of TLPKs with various development and stress related genes. The results indicated diverse roles of TLPKs, which can be utilized for the development of eco-friendly pest resistant crops in future.</description><subject>Amino Acid Sequence</subject><subject>Co-expression</subject><subject>Crops, Agricultural - genetics</subject><subject>Crops, Agricultural - metabolism</subject><subject>Duplication event</subject><subject>Expression analysis</subject><subject>Gene Expression Profiling</subject><subject>Pathogenesis-related 5</subject><subject>Phylogeny</subject><subject>Plant Proteins - chemistry</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Protein Kinases - chemistry</subject><subject>Protein Kinases - genetics</subject><subject>Protein Kinases - metabolism</subject><subject>Sequence Alignment</subject><subject>Thaumatin-like protein kinases</subject><subject>Transcription, Genetic</subject><issn>0168-9452</issn><issn>1873-2259</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkMtOwzAQRS0EglL4hSpLNil-NInNClTxkkBsytqaOBPqkjjBTpDg63FVypaVJfvcO-NDyIzROaMsv9zM-wbcEIydc8rUnDEqWHFAJkwWIuU8U4dkEkGZqkXGT8hpCBtKKc-y4picRLRQitEJaVdrGFsYrEsb-45J77sBrUverYOA4Sp57ho0YwM-MWvwYAb09jvynUvAVcngwQXjbb-9gWabr21j3VsSS2r7iYlBj_HB-K4PZ-Sohibg-e85Ja93t6vlQ_r0cv-4vHlKjcjlkEqhiirLGVQlSMHQUAmIvKwXikENMisXtEIEBqoSrM64wkVGlYQSIm-MmJKLXW9c52PEMOjWBoNNVIbdGDQXnArJ8kJGNN-hccEQPNa697YF_6UZ1VvVeqP3qvVWtd6pjsHZ74yxbLH6i-3dRuB6B2D86adFr2MFOoOV9WgGXXX2vxk_aFOWlw</recordid><startdate>202001</startdate><enddate>202001</enddate><creator>Sharma, Alok</creator><creator>Shumayla</creator><creator>Tyagi, Shivi</creator><creator>Alok, Anshu</creator><creator>Singh, Kashmir</creator><creator>Upadhyay, Santosh Kumar</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>202001</creationdate><title>Thaumatin-like protein kinases: Molecular characterization and transcriptional profiling in five cereal crops</title><author>Sharma, Alok ; Shumayla ; Tyagi, Shivi ; Alok, Anshu ; Singh, Kashmir ; Upadhyay, Santosh Kumar</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c368t-8397d561adba831ec08aee2bf491afa85b40deea1a9d31f529e45098abaa83cc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Amino Acid Sequence</topic><topic>Co-expression</topic><topic>Crops, Agricultural - genetics</topic><topic>Crops, Agricultural - metabolism</topic><topic>Duplication event</topic><topic>Expression analysis</topic><topic>Gene Expression Profiling</topic><topic>Pathogenesis-related 5</topic><topic>Phylogeny</topic><topic>Plant Proteins - chemistry</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Protein Kinases - chemistry</topic><topic>Protein Kinases - genetics</topic><topic>Protein Kinases - metabolism</topic><topic>Sequence Alignment</topic><topic>Thaumatin-like protein kinases</topic><topic>Transcription, Genetic</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sharma, Alok</creatorcontrib><creatorcontrib>Shumayla</creatorcontrib><creatorcontrib>Tyagi, Shivi</creatorcontrib><creatorcontrib>Alok, Anshu</creatorcontrib><creatorcontrib>Singh, Kashmir</creatorcontrib><creatorcontrib>Upadhyay, Santosh Kumar</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Plant science (Limerick)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sharma, Alok</au><au>Shumayla</au><au>Tyagi, Shivi</au><au>Alok, Anshu</au><au>Singh, Kashmir</au><au>Upadhyay, Santosh Kumar</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Thaumatin-like protein kinases: Molecular characterization and transcriptional profiling in five cereal crops</atitle><jtitle>Plant science (Limerick)</jtitle><addtitle>Plant Sci</addtitle><date>2020-01</date><risdate>2020</risdate><volume>290</volume><spage>110317</spage><epage>110317</epage><pages>110317-110317</pages><artnum>110317</artnum><issn>0168-9452</issn><eissn>1873-2259</eissn><abstract>•A total of 28 TLPK genes were identified in the genome of five cereal crops.•Paralogous analysis suggested the role of duplication events (DEs) in the evolution of TLPK genes in cereals.•Tissue specific expression suggested their role in both vegetative and reproductive tissue development.•Modulated expression of TaTLPKs in the presence of biotic and abiotic stresses in T. aestivum suggested their roles in stress response.•Co-expression analysis showed interaction of TLPKs with various development and stress related genes.
Thaumatin-like protein kinases (TLPKs) are defense related proteins having antimicrobial property. Herein, we identified two TLPKs in the genome of Brachypodium distachyon and Oryza sativa, four in Hordeum vulgare and Sorghum bicolor, and 16 in Triticum aestivum. All the TLPKs were located at only one chromosome in each plant except T. aestivum, where they were located on chromosome 2 and chromosome 3. Paralogous analysis suggested the occurrence of one duplication event (DE) in each B. distachyon and O. sativa, two in H. vulgare while four DEs in T. aestivum genome during the evolution of TLPKs. The majority of TLPKs were intron less, while a few contains one or two introns. The introns were found in each 0, 1 and 2 phase. Protein structure analysis suggested the occurrence of a thaumatin and a kinase domain with a transmembrane (TM) helix in each TLPK. Further, a thaumatin family signature motif "GX[GF]XCXT[GA]DCX(1,2)GX(2,3)C", a "REDDD" motif and 16 cysteine residues were found conserved in the majority of TLPKs. Expression analysis indicated variable expression of TLPKs in various tissues of different cereal crops. They were high expressing in reproductive tissues in B. distachyon, while in leaves in T. aestivum. Modulated expression of TaTLPKs in the presence of fungal pathogen, and heat, drought and salt stress in T. aestivum suggested their roles in stress response. Co-expression analysis showed interaction of TLPKs with various development and stress related genes. The results indicated diverse roles of TLPKs, which can be utilized for the development of eco-friendly pest resistant crops in future.</abstract><cop>Ireland</cop><pub>Elsevier B.V</pub><pmid>31779910</pmid><doi>10.1016/j.plantsci.2019.110317</doi><tpages>1</tpages></addata></record> |
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subjects | Amino Acid Sequence Co-expression Crops, Agricultural - genetics Crops, Agricultural - metabolism Duplication event Expression analysis Gene Expression Profiling Pathogenesis-related 5 Phylogeny Plant Proteins - chemistry Plant Proteins - genetics Plant Proteins - metabolism Protein Kinases - chemistry Protein Kinases - genetics Protein Kinases - metabolism Sequence Alignment Thaumatin-like protein kinases Transcription, Genetic |
title | Thaumatin-like protein kinases: Molecular characterization and transcriptional profiling in five cereal crops |
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