Genome-based breeding approaches in major vegetable crops
Vegetable crops are major nutrient sources for humanity and have been well-cultivated since thousands of years of domestication. With the rapid development of next-generation sequencing and high-throughput genotyping technologies, the reference genome of more than 20 vegetables have been well-assemb...
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Veröffentlicht in: | Theoretical and applied genetics 2020-05, Vol.133 (5), p.1739-1752 |
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creator | Hao, Ning Han, Deguo Huang, Ke Du, Yalin Yang, Jingjing Zhang, Jian Wen, Changlong Wu, Tao |
description | Vegetable crops are major nutrient sources for humanity and have been well-cultivated since thousands of years of domestication. With the rapid development of next-generation sequencing and high-throughput genotyping technologies, the reference genome of more than 20 vegetables have been well-assembled and published. Resequencing approaches on large-scale germplasm resources have clarified the domestication and improvement of vegetable crops by human selection; its application on genetic mapping and quantitative trait locus analysis has led to the discovery of key genes and molecular markers linked to important traits in vegetables. Moreover, genome-based breeding has been utilized in many vegetable crops, including Solanaceae, Cucurbitaceae, Cruciferae, and other families, thereby promoting molecular breeding at a single-nucleotide level. Thus, genome-wide SNP markers have been widely used, and high-throughput genotyping techniques have become one of the most essential methods in vegetable breeding. With the popularization of gene editing technology research on vegetable crops, breeding efficiency can be rapidly increased, especially by combining the genomic and variomic information of vegetable crops. This review outlines the present genome-based breeding approaches used for major vegetable crops to provide insights into next-generation molecular breeding for the increasing global population. |
doi_str_mv | 10.1007/s00122-019-03477-z |
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With the rapid development of next-generation sequencing and high-throughput genotyping technologies, the reference genome of more than 20 vegetables have been well-assembled and published. Resequencing approaches on large-scale germplasm resources have clarified the domestication and improvement of vegetable crops by human selection; its application on genetic mapping and quantitative trait locus analysis has led to the discovery of key genes and molecular markers linked to important traits in vegetables. Moreover, genome-based breeding has been utilized in many vegetable crops, including Solanaceae, Cucurbitaceae, Cruciferae, and other families, thereby promoting molecular breeding at a single-nucleotide level. Thus, genome-wide SNP markers have been widely used, and high-throughput genotyping techniques have become one of the most essential methods in vegetable breeding. With the popularization of gene editing technology research on vegetable crops, breeding efficiency can be rapidly increased, especially by combining the genomic and variomic information of vegetable crops. This review outlines the present genome-based breeding approaches used for major vegetable crops to provide insights into next-generation molecular breeding for the increasing global population.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-019-03477-z</identifier><identifier>PMID: 31728564</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Agricultural industry ; Agriculture ; Analysis ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Crop Genetic Research in Asia ; Crops ; Crops, Agricultural - genetics ; Crops, Agricultural - growth & development ; Domestication ; Gene mapping ; Genes ; Genetic analysis ; Genetic aspects ; Genetic research ; Genome editing ; Genome, Plant ; Genomes ; Genomics ; Genomics - methods ; Genotyping ; Germplasm ; Life Sciences ; Next-generation sequencing ; Nutrient sources ; Phenotype ; Plant Biochemistry ; Plant breeding ; Plant Breeding - standards ; Plant Breeding/Biotechnology ; Plant Genetics and Genomics ; Quantitative Trait Loci ; Review ; Single-nucleotide polymorphism ; Vegetables ; Vegetables - genetics ; Vegetables - growth & development ; Weeds</subject><ispartof>Theoretical and applied genetics, 2020-05, Vol.133 (5), p.1739-1752</ispartof><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2019</rights><rights>COPYRIGHT 2020 Springer</rights><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2019.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c476t-5d7d481121bac22000de930a1b8503b95891dbef9cc7b457acac709117a6fdd83</citedby><cites>FETCH-LOGICAL-c476t-5d7d481121bac22000de930a1b8503b95891dbef9cc7b457acac709117a6fdd83</cites><orcidid>0000-0001-5595-8644</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00122-019-03477-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00122-019-03477-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31728564$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hao, Ning</creatorcontrib><creatorcontrib>Han, Deguo</creatorcontrib><creatorcontrib>Huang, Ke</creatorcontrib><creatorcontrib>Du, Yalin</creatorcontrib><creatorcontrib>Yang, Jingjing</creatorcontrib><creatorcontrib>Zhang, Jian</creatorcontrib><creatorcontrib>Wen, Changlong</creatorcontrib><creatorcontrib>Wu, Tao</creatorcontrib><title>Genome-based breeding approaches in major vegetable crops</title><title>Theoretical and applied genetics</title><addtitle>Theor Appl Genet</addtitle><addtitle>Theor Appl Genet</addtitle><description>Vegetable crops are major nutrient sources for humanity and have been well-cultivated since thousands of years of domestication. 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Academic</collection><jtitle>Theoretical and applied genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Hao, Ning</au><au>Han, Deguo</au><au>Huang, Ke</au><au>Du, Yalin</au><au>Yang, Jingjing</au><au>Zhang, Jian</au><au>Wen, Changlong</au><au>Wu, Tao</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-based breeding approaches in major vegetable crops</atitle><jtitle>Theoretical and applied genetics</jtitle><stitle>Theor Appl Genet</stitle><addtitle>Theor Appl Genet</addtitle><date>2020-05-01</date><risdate>2020</risdate><volume>133</volume><issue>5</issue><spage>1739</spage><epage>1752</epage><pages>1739-1752</pages><issn>0040-5752</issn><eissn>1432-2242</eissn><abstract>Vegetable crops are major nutrient sources for humanity and have been well-cultivated since thousands of years of domestication. 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subjects | Agricultural industry Agriculture Analysis Biochemistry Biomedical and Life Sciences Biotechnology Crop Genetic Research in Asia Crops Crops, Agricultural - genetics Crops, Agricultural - growth & development Domestication Gene mapping Genes Genetic analysis Genetic aspects Genetic research Genome editing Genome, Plant Genomes Genomics Genomics - methods Genotyping Germplasm Life Sciences Next-generation sequencing Nutrient sources Phenotype Plant Biochemistry Plant breeding Plant Breeding - standards Plant Breeding/Biotechnology Plant Genetics and Genomics Quantitative Trait Loci Review Single-nucleotide polymorphism Vegetables Vegetables - genetics Vegetables - growth & development Weeds |
title | Genome-based breeding approaches in major vegetable crops |
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