Role of the N-terminus in human 4-hydroxyphenylpyruvate dioxygenase activity

4-Hydroxyphenylpyruvate dioxygenase (HPPD) is a key enzyme in tyrosine catabolism, catalysing the oxidation of 4-hydroxyphenylpyruvate to homogentisate. Genetic deficiency of this enzyme causes type III tyrosinaemia. The enzyme comprises two barrel-shaped domains formed by the N- and C-termini, with...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Journal of biochemistry (Tokyo) 2020-03, Vol.167 (3), p.315-322
Hauptverfasser: Feng, An-Ning, Huang, Chih-Wei, Lin, Chi-Huei, Chang, Yung-Lung, Ni, Meng-Yuan, Lee, Hwei-Jen
Format: Artikel
Sprache:eng
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 322
container_issue 3
container_start_page 315
container_title Journal of biochemistry (Tokyo)
container_volume 167
creator Feng, An-Ning
Huang, Chih-Wei
Lin, Chi-Huei
Chang, Yung-Lung
Ni, Meng-Yuan
Lee, Hwei-Jen
description 4-Hydroxyphenylpyruvate dioxygenase (HPPD) is a key enzyme in tyrosine catabolism, catalysing the oxidation of 4-hydroxyphenylpyruvate to homogentisate. Genetic deficiency of this enzyme causes type III tyrosinaemia. The enzyme comprises two barrel-shaped domains formed by the N- and C-termini, with the active site located in the C-terminus. This study investigated the role of the N-terminus, located at the domain interface, in HPPD activity. We observed that the kcat/Km decreased ∼8-fold compared with wild type upon removal of the 12 N-terminal residues (ΔR13). Interestingly, the wild-type level of activity was retained in a mutant missing the 17 N-terminal residues, with a kcat/Km 11-fold higher than that of the ΔR13 mutant; however, the structural stability of this mutant was lower than that of wild type. A 2-fold decrease in catalytic efficiency was observed for the K10A and E12A mutants, indicating synergism between these residues in the enzyme catalytic function. A molecular dynamics simulation showed large RMS fluctuations in ΔR13 suggesting that conformational flexibility at the domain interface leads to lower activity in this mutant. These results demonstrate that the N-terminus maintains the stability of the domain interface to allow for catalysis at the active site of HPPD.
doi_str_mv 10.1093/jb/mvz092
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2314567377</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2314567377</sourcerecordid><originalsourceid>FETCH-LOGICAL-c336t-2f2ed453fd48d81252a01bf18615b5885f16ca7c0d6070142faa1e4aad79d0d13</originalsourceid><addsrcrecordid>eNo9kEtLw0AUhQdRbK0u_AMyS13Ezp1HJl2K-IKiIAruwiRzx6Tk5UxSjL_ellZXh3P4OIuPkHNg18AWYr7K5vX6hy34AZmCVnHEYwWHZMoYh2jB5ceEnISw2lYuxDGZCNCcS55MyfK1rZC2jvYF0ueoR1-XzRBo2dBiqE1DZVSM1rffY1dgM1bd6Ie16ZHacrN9YmMCUpP35brsx1Ny5EwV8GyfM_J-f_d2-xgtXx6ebm-WUS5E3EfccbRSCWdlYhPgihsGmYMkBpWpJFEO4tzonNmYaQaSO2MApTFWLyyzIGbkcvfb-fZrwNCndRlyrCrTYDuElAuQKtZC6w16tUNz34bg0aWdL2vjxxRYupWXrrJ0J2_DXuxvh6xG-0_-2RK_ciJrkw</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2314567377</pqid></control><display><type>article</type><title>Role of the N-terminus in human 4-hydroxyphenylpyruvate dioxygenase activity</title><source>Oxford University Press Journals All Titles (1996-Current)</source><source>Alma/SFX Local Collection</source><creator>Feng, An-Ning ; Huang, Chih-Wei ; Lin, Chi-Huei ; Chang, Yung-Lung ; Ni, Meng-Yuan ; Lee, Hwei-Jen</creator><creatorcontrib>Feng, An-Ning ; Huang, Chih-Wei ; Lin, Chi-Huei ; Chang, Yung-Lung ; Ni, Meng-Yuan ; Lee, Hwei-Jen</creatorcontrib><description>4-Hydroxyphenylpyruvate dioxygenase (HPPD) is a key enzyme in tyrosine catabolism, catalysing the oxidation of 4-hydroxyphenylpyruvate to homogentisate. Genetic deficiency of this enzyme causes type III tyrosinaemia. The enzyme comprises two barrel-shaped domains formed by the N- and C-termini, with the active site located in the C-terminus. This study investigated the role of the N-terminus, located at the domain interface, in HPPD activity. We observed that the kcat/Km decreased ∼8-fold compared with wild type upon removal of the 12 N-terminal residues (ΔR13). Interestingly, the wild-type level of activity was retained in a mutant missing the 17 N-terminal residues, with a kcat/Km 11-fold higher than that of the ΔR13 mutant; however, the structural stability of this mutant was lower than that of wild type. A 2-fold decrease in catalytic efficiency was observed for the K10A and E12A mutants, indicating synergism between these residues in the enzyme catalytic function. A molecular dynamics simulation showed large RMS fluctuations in ΔR13 suggesting that conformational flexibility at the domain interface leads to lower activity in this mutant. These results demonstrate that the N-terminus maintains the stability of the domain interface to allow for catalysis at the active site of HPPD.</description><identifier>ISSN: 0021-924X</identifier><identifier>EISSN: 1756-2651</identifier><identifier>DOI: 10.1093/jb/mvz092</identifier><identifier>PMID: 31722428</identifier><language>eng</language><publisher>England</publisher><ispartof>Journal of biochemistry (Tokyo), 2020-03, Vol.167 (3), p.315-322</ispartof><rights>The Author(s) 2019. Published by Oxford University Press on behalf of the Japanese Biochemical Society. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c336t-2f2ed453fd48d81252a01bf18615b5885f16ca7c0d6070142faa1e4aad79d0d13</citedby><cites>FETCH-LOGICAL-c336t-2f2ed453fd48d81252a01bf18615b5885f16ca7c0d6070142faa1e4aad79d0d13</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31722428$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Feng, An-Ning</creatorcontrib><creatorcontrib>Huang, Chih-Wei</creatorcontrib><creatorcontrib>Lin, Chi-Huei</creatorcontrib><creatorcontrib>Chang, Yung-Lung</creatorcontrib><creatorcontrib>Ni, Meng-Yuan</creatorcontrib><creatorcontrib>Lee, Hwei-Jen</creatorcontrib><title>Role of the N-terminus in human 4-hydroxyphenylpyruvate dioxygenase activity</title><title>Journal of biochemistry (Tokyo)</title><addtitle>J Biochem</addtitle><description>4-Hydroxyphenylpyruvate dioxygenase (HPPD) is a key enzyme in tyrosine catabolism, catalysing the oxidation of 4-hydroxyphenylpyruvate to homogentisate. Genetic deficiency of this enzyme causes type III tyrosinaemia. The enzyme comprises two barrel-shaped domains formed by the N- and C-termini, with the active site located in the C-terminus. This study investigated the role of the N-terminus, located at the domain interface, in HPPD activity. We observed that the kcat/Km decreased ∼8-fold compared with wild type upon removal of the 12 N-terminal residues (ΔR13). Interestingly, the wild-type level of activity was retained in a mutant missing the 17 N-terminal residues, with a kcat/Km 11-fold higher than that of the ΔR13 mutant; however, the structural stability of this mutant was lower than that of wild type. A 2-fold decrease in catalytic efficiency was observed for the K10A and E12A mutants, indicating synergism between these residues in the enzyme catalytic function. A molecular dynamics simulation showed large RMS fluctuations in ΔR13 suggesting that conformational flexibility at the domain interface leads to lower activity in this mutant. These results demonstrate that the N-terminus maintains the stability of the domain interface to allow for catalysis at the active site of HPPD.</description><issn>0021-924X</issn><issn>1756-2651</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNo9kEtLw0AUhQdRbK0u_AMyS13Ezp1HJl2K-IKiIAruwiRzx6Tk5UxSjL_ellZXh3P4OIuPkHNg18AWYr7K5vX6hy34AZmCVnHEYwWHZMoYh2jB5ceEnISw2lYuxDGZCNCcS55MyfK1rZC2jvYF0ueoR1-XzRBo2dBiqE1DZVSM1rffY1dgM1bd6Ie16ZHacrN9YmMCUpP35brsx1Ny5EwV8GyfM_J-f_d2-xgtXx6ebm-WUS5E3EfccbRSCWdlYhPgihsGmYMkBpWpJFEO4tzonNmYaQaSO2MApTFWLyyzIGbkcvfb-fZrwNCndRlyrCrTYDuElAuQKtZC6w16tUNz34bg0aWdL2vjxxRYupWXrrJ0J2_DXuxvh6xG-0_-2RK_ciJrkw</recordid><startdate>20200301</startdate><enddate>20200301</enddate><creator>Feng, An-Ning</creator><creator>Huang, Chih-Wei</creator><creator>Lin, Chi-Huei</creator><creator>Chang, Yung-Lung</creator><creator>Ni, Meng-Yuan</creator><creator>Lee, Hwei-Jen</creator><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20200301</creationdate><title>Role of the N-terminus in human 4-hydroxyphenylpyruvate dioxygenase activity</title><author>Feng, An-Ning ; Huang, Chih-Wei ; Lin, Chi-Huei ; Chang, Yung-Lung ; Ni, Meng-Yuan ; Lee, Hwei-Jen</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c336t-2f2ed453fd48d81252a01bf18615b5885f16ca7c0d6070142faa1e4aad79d0d13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Feng, An-Ning</creatorcontrib><creatorcontrib>Huang, Chih-Wei</creatorcontrib><creatorcontrib>Lin, Chi-Huei</creatorcontrib><creatorcontrib>Chang, Yung-Lung</creatorcontrib><creatorcontrib>Ni, Meng-Yuan</creatorcontrib><creatorcontrib>Lee, Hwei-Jen</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of biochemistry (Tokyo)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Feng, An-Ning</au><au>Huang, Chih-Wei</au><au>Lin, Chi-Huei</au><au>Chang, Yung-Lung</au><au>Ni, Meng-Yuan</au><au>Lee, Hwei-Jen</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Role of the N-terminus in human 4-hydroxyphenylpyruvate dioxygenase activity</atitle><jtitle>Journal of biochemistry (Tokyo)</jtitle><addtitle>J Biochem</addtitle><date>2020-03-01</date><risdate>2020</risdate><volume>167</volume><issue>3</issue><spage>315</spage><epage>322</epage><pages>315-322</pages><issn>0021-924X</issn><eissn>1756-2651</eissn><abstract>4-Hydroxyphenylpyruvate dioxygenase (HPPD) is a key enzyme in tyrosine catabolism, catalysing the oxidation of 4-hydroxyphenylpyruvate to homogentisate. Genetic deficiency of this enzyme causes type III tyrosinaemia. The enzyme comprises two barrel-shaped domains formed by the N- and C-termini, with the active site located in the C-terminus. This study investigated the role of the N-terminus, located at the domain interface, in HPPD activity. We observed that the kcat/Km decreased ∼8-fold compared with wild type upon removal of the 12 N-terminal residues (ΔR13). Interestingly, the wild-type level of activity was retained in a mutant missing the 17 N-terminal residues, with a kcat/Km 11-fold higher than that of the ΔR13 mutant; however, the structural stability of this mutant was lower than that of wild type. A 2-fold decrease in catalytic efficiency was observed for the K10A and E12A mutants, indicating synergism between these residues in the enzyme catalytic function. A molecular dynamics simulation showed large RMS fluctuations in ΔR13 suggesting that conformational flexibility at the domain interface leads to lower activity in this mutant. These results demonstrate that the N-terminus maintains the stability of the domain interface to allow for catalysis at the active site of HPPD.</abstract><cop>England</cop><pmid>31722428</pmid><doi>10.1093/jb/mvz092</doi><tpages>8</tpages></addata></record>
fulltext fulltext
identifier ISSN: 0021-924X
ispartof Journal of biochemistry (Tokyo), 2020-03, Vol.167 (3), p.315-322
issn 0021-924X
1756-2651
language eng
recordid cdi_proquest_miscellaneous_2314567377
source Oxford University Press Journals All Titles (1996-Current); Alma/SFX Local Collection
title Role of the N-terminus in human 4-hydroxyphenylpyruvate dioxygenase activity
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-12T22%3A44%3A31IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Role%20of%20the%20N-terminus%20in%20human%204-hydroxyphenylpyruvate%20dioxygenase%20activity&rft.jtitle=Journal%20of%20biochemistry%20(Tokyo)&rft.au=Feng,%20An-Ning&rft.date=2020-03-01&rft.volume=167&rft.issue=3&rft.spage=315&rft.epage=322&rft.pages=315-322&rft.issn=0021-924X&rft.eissn=1756-2651&rft_id=info:doi/10.1093/jb/mvz092&rft_dat=%3Cproquest_cross%3E2314567377%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2314567377&rft_id=info:pmid/31722428&rfr_iscdi=true