Micromonospora deserti sp. nov., isolated from the Karakum Desert
An isolate, 13K206 , with typical morphological characteristics of the genus was obtained during a study searching for novel actinobacteria with biosynthetic potential from the Karakum Desert. A polyphasic approach was adopted to determine taxonomic affiliation of the strain. The strain showed chemo...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2020-01, Vol.70 (1), p.282-291 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Saygin, Hayrettin Ay, Hilal Guven, Kiymet Cetin, Demet Sahin, Nevzat |
| description | An isolate, 13K206
, with typical morphological characteristics of the genus
was obtained during a study searching for novel actinobacteria with biosynthetic potential from the Karakum Desert. A polyphasic approach was adopted to determine taxonomic affiliation of the strain. The strain showed chemotaxonomical properties consistent with its classification in the genus
such as
- and 3-OH-A
pm in the cell-wall peptidoglycan, xylose in whole-cell hydrolysate and diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol as major polar lipids. The results of phylogenetic analysis based on 16S rRNA gene sequences revealed that the strain was closely related to '
' S3-1
,
DSM 43818
and
DS3186
with sequence similarities of 98.6, 98.5 and 98.4 %, respectively. Digital DNA-DNA hybridization and average nucleotide identity analyses in addition to
gene analysis confirmed the assignment of the strain to a novel species within the genus
for which the name
sp. nov. is proposed. The type strain is 13K206
(=JCM 32583
=DSM 107532
). The DNA G+C content of the type strain is 72.4 mol%. |
| doi_str_mv | 10.1099/ijsem.0.003752 |
| format | Article |
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, with typical morphological characteristics of the genus
was obtained during a study searching for novel actinobacteria with biosynthetic potential from the Karakum Desert. A polyphasic approach was adopted to determine taxonomic affiliation of the strain. The strain showed chemotaxonomical properties consistent with its classification in the genus
such as
- and 3-OH-A
pm in the cell-wall peptidoglycan, xylose in whole-cell hydrolysate and diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol as major polar lipids. The results of phylogenetic analysis based on 16S rRNA gene sequences revealed that the strain was closely related to '
' S3-1
,
DSM 43818
and
DS3186
with sequence similarities of 98.6, 98.5 and 98.4 %, respectively. Digital DNA-DNA hybridization and average nucleotide identity analyses in addition to
gene analysis confirmed the assignment of the strain to a novel species within the genus
for which the name
sp. nov. is proposed. The type strain is 13K206
(=JCM 32583
=DSM 107532
). The DNA G+C content of the type strain is 72.4 mol%.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.003752</identifier><identifier>PMID: 31596193</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Typing Techniques ; Base Composition ; Cell Wall - chemistry ; Desert Climate ; Diaminopimelic Acid - chemistry ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Micromonospora - classification ; Micromonospora - isolation & purification ; Nucleic Acid Hybridization ; Peptidoglycan - chemistry ; Phospholipids - chemistry ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil Microbiology ; Turkmenistan</subject><ispartof>International journal of systematic and evolutionary microbiology, 2020-01, Vol.70 (1), p.282-291</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c335t-468f91b6c0bc599c2e88a9d6dd0c5a7b4d28edb6eadb4ff12418fa160d7127fc3</citedby><cites>FETCH-LOGICAL-c335t-468f91b6c0bc599c2e88a9d6dd0c5a7b4d28edb6eadb4ff12418fa160d7127fc3</cites><orcidid>0000-0002-6026-656X ; 0000-0002-8642-5872 ; 0000-0002-8735-4703</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31596193$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Saygin, Hayrettin</creatorcontrib><creatorcontrib>Ay, Hilal</creatorcontrib><creatorcontrib>Guven, Kiymet</creatorcontrib><creatorcontrib>Cetin, Demet</creatorcontrib><creatorcontrib>Sahin, Nevzat</creatorcontrib><title>Micromonospora deserti sp. nov., isolated from the Karakum Desert</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>An isolate, 13K206
, with typical morphological characteristics of the genus
was obtained during a study searching for novel actinobacteria with biosynthetic potential from the Karakum Desert. A polyphasic approach was adopted to determine taxonomic affiliation of the strain. The strain showed chemotaxonomical properties consistent with its classification in the genus
such as
- and 3-OH-A
pm in the cell-wall peptidoglycan, xylose in whole-cell hydrolysate and diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol as major polar lipids. The results of phylogenetic analysis based on 16S rRNA gene sequences revealed that the strain was closely related to '
' S3-1
,
DSM 43818
and
DS3186
with sequence similarities of 98.6, 98.5 and 98.4 %, respectively. Digital DNA-DNA hybridization and average nucleotide identity analyses in addition to
gene analysis confirmed the assignment of the strain to a novel species within the genus
for which the name
sp. nov. is proposed. The type strain is 13K206
(=JCM 32583
=DSM 107532
). The DNA G+C content of the type strain is 72.4 mol%.</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>Cell Wall - chemistry</subject><subject>Desert Climate</subject><subject>Diaminopimelic Acid - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Micromonospora - classification</subject><subject>Micromonospora - isolation & purification</subject><subject>Nucleic Acid Hybridization</subject><subject>Peptidoglycan - chemistry</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><subject>Turkmenistan</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kMtOwzAQRS0EoqWwZYm8ZEHC-BEnXla8RREbWFuOHyIlqYudIPH3hLZ0NaPRuVeag9A5gZyAlNfNMrkuhxyAlQU9QFPChcgKYPxwv1MxQScpLQHGA8AxmjBSSEEkm6L5S2Ni6MIqpHWIGluXXOwbnNY5XoXv_Ao3KbS6dxb7kcP9h8PPOurPocO3G_YUHXndJne2mzP0fn_3dvOYLV4fnm7mi8wwVvQZF5WXpBYGalNIaairKi2tsBZMocuaW1o5Wwunbc29J5STymsiwJaElt6wGbrc9q5j-Bpc6lXXJOPaVq9cGJKiDBgFyTgf0XyLjq-lFJ1X69h0Ov4oAupPm9poU6C22sbAxa57qDtn9_i_J_YLJrJpag</recordid><startdate>202001</startdate><enddate>202001</enddate><creator>Saygin, Hayrettin</creator><creator>Ay, Hilal</creator><creator>Guven, Kiymet</creator><creator>Cetin, Demet</creator><creator>Sahin, Nevzat</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-6026-656X</orcidid><orcidid>https://orcid.org/0000-0002-8642-5872</orcidid><orcidid>https://orcid.org/0000-0002-8735-4703</orcidid></search><sort><creationdate>202001</creationdate><title>Micromonospora deserti sp. nov., isolated from the Karakum Desert</title><author>Saygin, Hayrettin ; Ay, Hilal ; Guven, Kiymet ; Cetin, Demet ; Sahin, Nevzat</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c335t-468f91b6c0bc599c2e88a9d6dd0c5a7b4d28edb6eadb4ff12418fa160d7127fc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>Cell Wall - chemistry</topic><topic>Desert Climate</topic><topic>Diaminopimelic Acid - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Micromonospora - classification</topic><topic>Micromonospora - isolation & purification</topic><topic>Nucleic Acid Hybridization</topic><topic>Peptidoglycan - chemistry</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><topic>Turkmenistan</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Saygin, Hayrettin</creatorcontrib><creatorcontrib>Ay, Hilal</creatorcontrib><creatorcontrib>Guven, Kiymet</creatorcontrib><creatorcontrib>Cetin, Demet</creatorcontrib><creatorcontrib>Sahin, Nevzat</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Saygin, Hayrettin</au><au>Ay, Hilal</au><au>Guven, Kiymet</au><au>Cetin, Demet</au><au>Sahin, Nevzat</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Micromonospora deserti sp. nov., isolated from the Karakum Desert</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2020-01</date><risdate>2020</risdate><volume>70</volume><issue>1</issue><spage>282</spage><epage>291</epage><pages>282-291</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>An isolate, 13K206
, with typical morphological characteristics of the genus
was obtained during a study searching for novel actinobacteria with biosynthetic potential from the Karakum Desert. A polyphasic approach was adopted to determine taxonomic affiliation of the strain. The strain showed chemotaxonomical properties consistent with its classification in the genus
such as
- and 3-OH-A
pm in the cell-wall peptidoglycan, xylose in whole-cell hydrolysate and diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol as major polar lipids. The results of phylogenetic analysis based on 16S rRNA gene sequences revealed that the strain was closely related to '
' S3-1
,
DSM 43818
and
DS3186
with sequence similarities of 98.6, 98.5 and 98.4 %, respectively. Digital DNA-DNA hybridization and average nucleotide identity analyses in addition to
gene analysis confirmed the assignment of the strain to a novel species within the genus
for which the name
sp. nov. is proposed. The type strain is 13K206
(=JCM 32583
=DSM 107532
). The DNA G+C content of the type strain is 72.4 mol%.</abstract><cop>England</cop><pmid>31596193</pmid><doi>10.1099/ijsem.0.003752</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-6026-656X</orcidid><orcidid>https://orcid.org/0000-0002-8642-5872</orcidid><orcidid>https://orcid.org/0000-0002-8735-4703</orcidid><oa>free_for_read</oa></addata></record> |
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| identifier | ISSN: 1466-5026 |
| ispartof | International journal of systematic and evolutionary microbiology, 2020-01, Vol.70 (1), p.282-291 |
| issn | 1466-5026 1466-5034 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2303209344 |
| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Base Composition Cell Wall - chemistry Desert Climate Diaminopimelic Acid - chemistry DNA, Bacterial - genetics Fatty Acids - chemistry Micromonospora - classification Micromonospora - isolation & purification Nucleic Acid Hybridization Peptidoglycan - chemistry Phospholipids - chemistry Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil Microbiology Turkmenistan |
| title | Micromonospora deserti sp. nov., isolated from the Karakum Desert |
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