A Crystallographic Charge Density Study of the Partial Covalent Nature of Strong N⋅⋅⋅Br Halogen Bonds

The covalent nature of strong N−Br⋅⋅⋅N halogen bonds in a cocrystal (2) of N‐bromosuccinimide (NBS) with 3,5‐dimethylpyridine (lut) was determined from X‐ray charge density studies and compared to a weak N−Br⋅⋅⋅O halogen bond in pure crystalline NBS (1) and a covalent bond in bis(3‐methylpyridine)br...

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Veröffentlicht in:Angewandte Chemie International Edition 2019-10, Vol.58 (44), p.15702-15706
Hauptverfasser: Eraković, Mihael, Cinčić, Dominik, Molčanov, Krešimir, Stilinović, Vladimir
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container_issue 44
container_start_page 15702
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creator Eraković, Mihael
Cinčić, Dominik
Molčanov, Krešimir
Stilinović, Vladimir
description The covalent nature of strong N−Br⋅⋅⋅N halogen bonds in a cocrystal (2) of N‐bromosuccinimide (NBS) with 3,5‐dimethylpyridine (lut) was determined from X‐ray charge density studies and compared to a weak N−Br⋅⋅⋅O halogen bond in pure crystalline NBS (1) and a covalent bond in bis(3‐methylpyridine)bromonium cation (in its perchlorate salt (3). In 2, the donor N−Br bond is elongated by 0.0954 Å, while the Br⋅⋅⋅acceptor distance of 2.3194(4) is 1.08 Å shorter than the sum of the van der Waals radii. A maximum electron density of 0.38 e Å−3 along the Br⋅⋅⋅N halogen bond indicates a considerable covalent contribution to the total interaction. This value is intermediate to 0.067 e Å−3 for the Br⋅⋅⋅O contact in 1, and approximately 0.7 e Å−3 in both N−Br bonds of the bromonium cation in 3. A calculation of the natural bond order charges of the contact atoms, and the σ*(N1−Br) population of NBS as a function of distance between NBS and lut, have shown that charge transfer becomes significant at a Br⋅⋅⋅N distance below about 3 Å. Crystallographic charge density analysis of a strong N−Br⋅⋅⋅N halogen bond in a N‐bromosuccinimide and 3,5‐dimethylpyridine co‐crystal (NBS‐lut) reveals a partially covalent character. Comparisons with pure crystalline NBS and the covalent bond in a bis(3‐methylpyridine)bromonium cation suggest that there is a continuum of interactions between the intermolecular “non‐bonding” halogen bond and a three centre–two electron covalent bond.
doi_str_mv 10.1002/anie.201908875
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In 2, the donor N−Br bond is elongated by 0.0954 Å, while the Br⋅⋅⋅acceptor distance of 2.3194(4) is 1.08 Å shorter than the sum of the van der Waals radii. A maximum electron density of 0.38 e Å−3 along the Br⋅⋅⋅N halogen bond indicates a considerable covalent contribution to the total interaction. This value is intermediate to 0.067 e Å−3 for the Br⋅⋅⋅O contact in 1, and approximately 0.7 e Å−3 in both N−Br bonds of the bromonium cation in 3. A calculation of the natural bond order charges of the contact atoms, and the σ*(N1−Br) population of NBS as a function of distance between NBS and lut, have shown that charge transfer becomes significant at a Br⋅⋅⋅N distance below about 3 Å. Crystallographic charge density analysis of a strong N−Br⋅⋅⋅N halogen bond in a N‐bromosuccinimide and 3,5‐dimethylpyridine co‐crystal (NBS‐lut) reveals a partially covalent character. 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In 2, the donor N−Br bond is elongated by 0.0954 Å, while the Br⋅⋅⋅acceptor distance of 2.3194(4) is 1.08 Å shorter than the sum of the van der Waals radii. A maximum electron density of 0.38 e Å−3 along the Br⋅⋅⋅N halogen bond indicates a considerable covalent contribution to the total interaction. This value is intermediate to 0.067 e Å−3 for the Br⋅⋅⋅O contact in 1, and approximately 0.7 e Å−3 in both N−Br bonds of the bromonium cation in 3. A calculation of the natural bond order charges of the contact atoms, and the σ*(N1−Br) population of NBS as a function of distance between NBS and lut, have shown that charge transfer becomes significant at a Br⋅⋅⋅N distance below about 3 Å. Crystallographic charge density analysis of a strong N−Br⋅⋅⋅N halogen bond in a N‐bromosuccinimide and 3,5‐dimethylpyridine co‐crystal (NBS‐lut) reveals a partially covalent character. 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In 2, the donor N−Br bond is elongated by 0.0954 Å, while the Br⋅⋅⋅acceptor distance of 2.3194(4) is 1.08 Å shorter than the sum of the van der Waals radii. A maximum electron density of 0.38 e Å−3 along the Br⋅⋅⋅N halogen bond indicates a considerable covalent contribution to the total interaction. This value is intermediate to 0.067 e Å−3 for the Br⋅⋅⋅O contact in 1, and approximately 0.7 e Å−3 in both N−Br bonds of the bromonium cation in 3. A calculation of the natural bond order charges of the contact atoms, and the σ*(N1−Br) population of NBS as a function of distance between NBS and lut, have shown that charge transfer becomes significant at a Br⋅⋅⋅N distance below about 3 Å. Crystallographic charge density analysis of a strong N−Br⋅⋅⋅N halogen bond in a N‐bromosuccinimide and 3,5‐dimethylpyridine co‐crystal (NBS‐lut) reveals a partially covalent character. Comparisons with pure crystalline NBS and the covalent bond in a bis(3‐methylpyridine)bromonium cation suggest that there is a continuum of interactions between the intermolecular “non‐bonding” halogen bond and a three centre–two electron covalent bond.</abstract><cop>Germany</cop><pub>Wiley Subscription Services, Inc</pub><pmid>31441965</pmid><doi>10.1002/anie.201908875</doi><tpages>5</tpages><edition>International ed. in English</edition><orcidid>https://orcid.org/0000-0002-4383-5898</orcidid><orcidid>https://orcid.org/0000-0002-5477-2861</orcidid><orcidid>https://orcid.org/0000-0002-4081-2420</orcidid><oa>free_for_read</oa></addata></record>
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subjects Bonding strength
Cations
Charge density
Charge transfer
Covalence
Covalent bonds
Crystallography
Density
Electron density
noncovalent interactions
Perchlorate
Perchloric acid
quantum chemistry
supramolecular chemistry
X-ray diffraction
title A Crystallographic Charge Density Study of the Partial Covalent Nature of Strong N⋅⋅⋅Br Halogen Bonds
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