Genetic diversity of HLA system in six populations from Mexico City Metropolitan Area, Mexico: Mexico City North, Mexico City South, Mexico City East, Mexico City West, Mexico City Center and rural Mexico City
We studied HLA class I (HLA-A, -B) and class II (HLA-DRB1, -DQB1) alleles by PCR-SSP based typing in 1217 Mexicans from the Mexico City Metropolitan Area living in the northern (N = 751), southern (N = 52), eastern (N = 79), western (N = 33), and central (N = 152) Mexico City, and rural communities...
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| Veröffentlicht in: | Human immunology 2020-09, Vol.81 (9), p.539-543 |
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| creator | Barquera, Rodrigo Martínez-Álvarez, Julio César Hernández-Zaragoza, Diana Iraíz Bravo-Acevedo, Alicia Juárez-Nicolás, Francisco Arriaga-Perea, Agustín Jericó Vega-Martínez, María del Rosario Ortega-Yáñez, Andrea Benítez-Arvizu, Gamaliel Arrieta-Bolaños, Esteban Clayton, Stephen Juárez-Cortés, Eva Dolores López-Gil, Concepción García-Álvarez, Raquel Arrazola-García, María Araceli Martínez-Bezies, Virginia Juárez-Barreto, Vicencio Ramos-de la Cruz, Flor del Rocío Macías-Medrano, Rosa María Méndez-Mani, Patricia Escutia-González, Ariadna Montiel-Hernández, Gustavo Daniel Immel, Alexander Pavón-Vargas, María de los Ángeles Salgado-Galicia, Norma Novelo-Garza, Bárbara Zúñiga, Joaquín Yunis, Edmond J. Bekker-Méndez, Carolina Granados, Julio |
| description | We studied HLA class I (HLA-A, -B) and class II (HLA-DRB1, -DQB1) alleles by PCR-SSP based typing in 1217 Mexicans from the Mexico City Metropolitan Area living in the northern (N = 751), southern (N = 52), eastern (N = 79), western (N = 33), and central (N = 152) Mexico City, and rural communities (N = 150), to obtain information regarding allelic and haplotypic frequencies. We found that the most frequent haplotypes include 11 Native American haplotypes. Admixture estimates revealed that the main genetic components are Native American (63.85 ± 1.55% by ML; 57.19% of Native American haplotypes) and European (28.53 ± 3.13% by ML; 28.40% of European haplotypes), and a less apparent African genetic component (7.61 ± 1.96% by ML; 7.17% of African haplotypes). |
| doi_str_mv | 10.1016/j.humimm.2019.07.297 |
| format | Article |
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We found that the most frequent haplotypes include 11 Native American haplotypes. Admixture estimates revealed that the main genetic components are Native American (63.85 ± 1.55% by ML; 57.19% of Native American haplotypes) and European (28.53 ± 3.13% by ML; 28.40% of European haplotypes), and a less apparent African genetic component (7.61 ± 1.96% by ML; 7.17% of African haplotypes).</description><identifier>ISSN: 0198-8859</identifier><identifier>EISSN: 1879-1166</identifier><identifier>DOI: 10.1016/j.humimm.2019.07.297</identifier><identifier>PMID: 31353130</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Admixture ; HLA ; Immunogenetics ; Mexico City ; Mexico City Metropolitan Area ; Population genetics</subject><ispartof>Human immunology, 2020-09, Vol.81 (9), p.539-543</ispartof><rights>2019 American Society for Histocompatibility and Immunogenetics</rights><rights>Copyright © 2019 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c362t-192ff5a7c767950cf045b5cafb93b8af88ade22d57fbbbb4b412313bcb39fc883</citedby><cites>FETCH-LOGICAL-c362t-192ff5a7c767950cf045b5cafb93b8af88ade22d57fbbbb4b412313bcb39fc883</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.humimm.2019.07.297$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,777,781,3537,27905,27906,45976</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31353130$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Barquera, Rodrigo</creatorcontrib><creatorcontrib>Martínez-Álvarez, Julio César</creatorcontrib><creatorcontrib>Hernández-Zaragoza, Diana Iraíz</creatorcontrib><creatorcontrib>Bravo-Acevedo, Alicia</creatorcontrib><creatorcontrib>Juárez-Nicolás, Francisco</creatorcontrib><creatorcontrib>Arriaga-Perea, Agustín Jericó</creatorcontrib><creatorcontrib>Vega-Martínez, María del Rosario</creatorcontrib><creatorcontrib>Ortega-Yáñez, Andrea</creatorcontrib><creatorcontrib>Benítez-Arvizu, Gamaliel</creatorcontrib><creatorcontrib>Arrieta-Bolaños, Esteban</creatorcontrib><creatorcontrib>Clayton, Stephen</creatorcontrib><creatorcontrib>Juárez-Cortés, Eva Dolores</creatorcontrib><creatorcontrib>López-Gil, Concepción</creatorcontrib><creatorcontrib>García-Álvarez, Raquel</creatorcontrib><creatorcontrib>Arrazola-García, María Araceli</creatorcontrib><creatorcontrib>Martínez-Bezies, Virginia</creatorcontrib><creatorcontrib>Juárez-Barreto, Vicencio</creatorcontrib><creatorcontrib>Ramos-de la Cruz, Flor del Rocío</creatorcontrib><creatorcontrib>Macías-Medrano, Rosa María</creatorcontrib><creatorcontrib>Méndez-Mani, Patricia</creatorcontrib><creatorcontrib>Escutia-González, Ariadna</creatorcontrib><creatorcontrib>Montiel-Hernández, Gustavo Daniel</creatorcontrib><creatorcontrib>Immel, Alexander</creatorcontrib><creatorcontrib>Pavón-Vargas, María de los Ángeles</creatorcontrib><creatorcontrib>Salgado-Galicia, Norma</creatorcontrib><creatorcontrib>Novelo-Garza, Bárbara</creatorcontrib><creatorcontrib>Zúñiga, Joaquín</creatorcontrib><creatorcontrib>Yunis, Edmond J.</creatorcontrib><creatorcontrib>Bekker-Méndez, Carolina</creatorcontrib><creatorcontrib>Granados, Julio</creatorcontrib><title>Genetic diversity of HLA system in six populations from Mexico City Metropolitan Area, Mexico: Mexico City North, Mexico City South, Mexico City East, Mexico City West, Mexico City Center and rural Mexico City</title><title>Human immunology</title><addtitle>Hum Immunol</addtitle><description>We studied HLA class I (HLA-A, -B) and class II (HLA-DRB1, -DQB1) alleles by PCR-SSP based typing in 1217 Mexicans from the Mexico City Metropolitan Area living in the northern (N = 751), southern (N = 52), eastern (N = 79), western (N = 33), and central (N = 152) Mexico City, and rural communities (N = 150), to obtain information regarding allelic and haplotypic frequencies. We found that the most frequent haplotypes include 11 Native American haplotypes. Admixture estimates revealed that the main genetic components are Native American (63.85 ± 1.55% by ML; 57.19% of Native American haplotypes) and European (28.53 ± 3.13% by ML; 28.40% of European haplotypes), and a less apparent African genetic component (7.61 ± 1.96% by ML; 7.17% of African haplotypes).</description><subject>Admixture</subject><subject>HLA</subject><subject>Immunogenetics</subject><subject>Mexico City</subject><subject>Mexico City Metropolitan Area</subject><subject>Population 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| ispartof | Human immunology, 2020-09, Vol.81 (9), p.539-543 |
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| language | eng |
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| source | Elsevier ScienceDirect Journals |
| subjects | Admixture HLA Immunogenetics Mexico City Mexico City Metropolitan Area Population genetics |
| title | Genetic diversity of HLA system in six populations from Mexico City Metropolitan Area, Mexico: Mexico City North, Mexico City South, Mexico City East, Mexico City West, Mexico City Center and rural Mexico City |
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