Genetic diversity of HLA system in two populations from Tabasco, Mexico: Villahermosa and rural Tabasco
We studied HLA class I (HLA-A, -B) and class II (HLA-DRB1, -DQB1) alleles by PCR-SSP based typing in 224 Mexicans from the state of Tabasco living in the city of Villahermosa (N = 82) and rural communities (N = 142), to obtain information regarding allelic and haplotypic frequencies. We found that t...
Gespeichert in:
| Veröffentlicht in: | Human immunology 2020-09, Vol.81 (9), p.560-562 |
|---|---|
| Hauptverfasser: | , , , , , , , , , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 562 |
|---|---|
| container_issue | 9 |
| container_start_page | 560 |
| container_title | Human immunology |
| container_volume | 81 |
| creator | Solís-Martínez, Raúl Barquera, Rodrigo Ponnandai-Shanmugavel, Komathi Sree Vega-Martínez, María del Rosario Vázquez-Castillo, Tannya Verónica Arrieta-Bolaños, Esteban Clayton, Stephen Hernández-Zaragoza, Diana Iraíz Bravo-Acevedo, Alicia Immel, Alexander Salgado-Galicia, Norma Zúñiga, Joaquín Yunis, Edmond J. Bekker-Méndez, Carolina Granados, Julio |
| description | We studied HLA class I (HLA-A, -B) and class II (HLA-DRB1, -DQB1) alleles by PCR-SSP based typing in 224 Mexicans from the state of Tabasco living in the city of Villahermosa (N = 82) and rural communities (N = 142), to obtain information regarding allelic and haplotypic frequencies. We found that the most frequent haplotypes in Tabasco include 13 Native American and two European haplotypes. Admixture estimates revealed that the main genetic components in Tabasco are Native American (67.79 ± 1.59% by ML; 56.25% of Native American haplotypes) and European (27.21 ± 3.97% by ML; 29.91% of European haplotypes), and a less prominent African genetic component (5.01 ± 4.42% by ML; 8.93% of African haplotypes). |
| doi_str_mv | 10.1016/j.humimm.2019.07.286 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2265749662</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0198885919309632</els_id><sourcerecordid>2265749662</sourcerecordid><originalsourceid>FETCH-LOGICAL-c362t-29a8ec1d2a5010ca7dd30cd4839a3de6bfc165aa75178403887c95bd8f49a2103</originalsourceid><addsrcrecordid>eNp9kE1P3DAQhi3Uqiy0_wAhH3towthJbIcDEkJ8SVv1Qnu1vPYEvIrjxU4o--8JWuDIaQ7zvPPxEHLEoGTAxMm6fJiCD6HkwNoSZMmV2CMLpmRbMCbEF7KYG6pQqmn3yUHOawCQIOtvZL9iVQPQwILcX-OAo7fU-SdM2Y9bGjt6szyneZtHDNQPdPwf6SZupt6MPg6ZdikGemdWJtv4i_7GZ2_jKf3n-948YAoxG2oGR9OUTP_OfSdfO9Nn_PFWD8nfq8u7i5ti-ef69uJ8WdhK8LHgrVFomeOmAQbWSOcqsK5WVWsqh2LVWSYaY2TDpKqhUkratlk51dWt4QyqQ_JzN3eT4uOEedTBZ4vzaQPGKWvORSPrVgg-o_UOtSnmnLDTm-SDSVvNQL8q1mu9U6xfFWuQelY8x47fNkyrgO4j9O50Bs52AM5_PnlMOluPg0XnE9pRu-g_3_ACQzaPcg</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2265749662</pqid></control><display><type>article</type><title>Genetic diversity of HLA system in two populations from Tabasco, Mexico: Villahermosa and rural Tabasco</title><source>Elsevier ScienceDirect Journals Complete</source><creator>Solís-Martínez, Raúl ; Barquera, Rodrigo ; Ponnandai-Shanmugavel, Komathi Sree ; Vega-Martínez, María del Rosario ; Vázquez-Castillo, Tannya Verónica ; Arrieta-Bolaños, Esteban ; Clayton, Stephen ; Hernández-Zaragoza, Diana Iraíz ; Bravo-Acevedo, Alicia ; Immel, Alexander ; Salgado-Galicia, Norma ; Zúñiga, Joaquín ; Yunis, Edmond J. ; Bekker-Méndez, Carolina ; Granados, Julio</creator><creatorcontrib>Solís-Martínez, Raúl ; Barquera, Rodrigo ; Ponnandai-Shanmugavel, Komathi Sree ; Vega-Martínez, María del Rosario ; Vázquez-Castillo, Tannya Verónica ; Arrieta-Bolaños, Esteban ; Clayton, Stephen ; Hernández-Zaragoza, Diana Iraíz ; Bravo-Acevedo, Alicia ; Immel, Alexander ; Salgado-Galicia, Norma ; Zúñiga, Joaquín ; Yunis, Edmond J. ; Bekker-Méndez, Carolina ; Granados, Julio</creatorcontrib><description>We studied HLA class I (HLA-A, -B) and class II (HLA-DRB1, -DQB1) alleles by PCR-SSP based typing in 224 Mexicans from the state of Tabasco living in the city of Villahermosa (N = 82) and rural communities (N = 142), to obtain information regarding allelic and haplotypic frequencies. We found that the most frequent haplotypes in Tabasco include 13 Native American and two European haplotypes. Admixture estimates revealed that the main genetic components in Tabasco are Native American (67.79 ± 1.59% by ML; 56.25% of Native American haplotypes) and European (27.21 ± 3.97% by ML; 29.91% of European haplotypes), and a less prominent African genetic component (5.01 ± 4.42% by ML; 8.93% of African haplotypes).</description><identifier>ISSN: 0198-8859</identifier><identifier>EISSN: 1879-1166</identifier><identifier>DOI: 10.1016/j.humimm.2019.07.286</identifier><identifier>PMID: 31350050</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Admixture ; HLA ; Immunogenetics ; Population genetics ; Tabasco</subject><ispartof>Human immunology, 2020-09, Vol.81 (9), p.560-562</ispartof><rights>2019 American Society for Histocompatibility and Immunogenetics</rights><rights>Copyright © 2019 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c362t-29a8ec1d2a5010ca7dd30cd4839a3de6bfc165aa75178403887c95bd8f49a2103</citedby><cites>FETCH-LOGICAL-c362t-29a8ec1d2a5010ca7dd30cd4839a3de6bfc165aa75178403887c95bd8f49a2103</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.humimm.2019.07.286$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31350050$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Solís-Martínez, Raúl</creatorcontrib><creatorcontrib>Barquera, Rodrigo</creatorcontrib><creatorcontrib>Ponnandai-Shanmugavel, Komathi Sree</creatorcontrib><creatorcontrib>Vega-Martínez, María del Rosario</creatorcontrib><creatorcontrib>Vázquez-Castillo, Tannya Verónica</creatorcontrib><creatorcontrib>Arrieta-Bolaños, Esteban</creatorcontrib><creatorcontrib>Clayton, Stephen</creatorcontrib><creatorcontrib>Hernández-Zaragoza, Diana Iraíz</creatorcontrib><creatorcontrib>Bravo-Acevedo, Alicia</creatorcontrib><creatorcontrib>Immel, Alexander</creatorcontrib><creatorcontrib>Salgado-Galicia, Norma</creatorcontrib><creatorcontrib>Zúñiga, Joaquín</creatorcontrib><creatorcontrib>Yunis, Edmond J.</creatorcontrib><creatorcontrib>Bekker-Méndez, Carolina</creatorcontrib><creatorcontrib>Granados, Julio</creatorcontrib><title>Genetic diversity of HLA system in two populations from Tabasco, Mexico: Villahermosa and rural Tabasco</title><title>Human immunology</title><addtitle>Hum Immunol</addtitle><description>We studied HLA class I (HLA-A, -B) and class II (HLA-DRB1, -DQB1) alleles by PCR-SSP based typing in 224 Mexicans from the state of Tabasco living in the city of Villahermosa (N = 82) and rural communities (N = 142), to obtain information regarding allelic and haplotypic frequencies. We found that the most frequent haplotypes in Tabasco include 13 Native American and two European haplotypes. Admixture estimates revealed that the main genetic components in Tabasco are Native American (67.79 ± 1.59% by ML; 56.25% of Native American haplotypes) and European (27.21 ± 3.97% by ML; 29.91% of European haplotypes), and a less prominent African genetic component (5.01 ± 4.42% by ML; 8.93% of African haplotypes).</description><subject>Admixture</subject><subject>HLA</subject><subject>Immunogenetics</subject><subject>Population genetics</subject><subject>Tabasco</subject><issn>0198-8859</issn><issn>1879-1166</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kE1P3DAQhi3Uqiy0_wAhH3towthJbIcDEkJ8SVv1Qnu1vPYEvIrjxU4o--8JWuDIaQ7zvPPxEHLEoGTAxMm6fJiCD6HkwNoSZMmV2CMLpmRbMCbEF7KYG6pQqmn3yUHOawCQIOtvZL9iVQPQwILcX-OAo7fU-SdM2Y9bGjt6szyneZtHDNQPdPwf6SZupt6MPg6ZdikGemdWJtv4i_7GZ2_jKf3n-948YAoxG2oGR9OUTP_OfSdfO9Nn_PFWD8nfq8u7i5ti-ef69uJ8WdhK8LHgrVFomeOmAQbWSOcqsK5WVWsqh2LVWSYaY2TDpKqhUkratlk51dWt4QyqQ_JzN3eT4uOEedTBZ4vzaQPGKWvORSPrVgg-o_UOtSnmnLDTm-SDSVvNQL8q1mu9U6xfFWuQelY8x47fNkyrgO4j9O50Bs52AM5_PnlMOluPg0XnE9pRu-g_3_ACQzaPcg</recordid><startdate>20200901</startdate><enddate>20200901</enddate><creator>Solís-Martínez, Raúl</creator><creator>Barquera, Rodrigo</creator><creator>Ponnandai-Shanmugavel, Komathi Sree</creator><creator>Vega-Martínez, María del Rosario</creator><creator>Vázquez-Castillo, Tannya Verónica</creator><creator>Arrieta-Bolaños, Esteban</creator><creator>Clayton, Stephen</creator><creator>Hernández-Zaragoza, Diana Iraíz</creator><creator>Bravo-Acevedo, Alicia</creator><creator>Immel, Alexander</creator><creator>Salgado-Galicia, Norma</creator><creator>Zúñiga, Joaquín</creator><creator>Yunis, Edmond J.</creator><creator>Bekker-Méndez, Carolina</creator><creator>Granados, Julio</creator><general>Elsevier Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20200901</creationdate><title>Genetic diversity of HLA system in two populations from Tabasco, Mexico: Villahermosa and rural Tabasco</title><author>Solís-Martínez, Raúl ; Barquera, Rodrigo ; Ponnandai-Shanmugavel, Komathi Sree ; Vega-Martínez, María del Rosario ; Vázquez-Castillo, Tannya Verónica ; Arrieta-Bolaños, Esteban ; Clayton, Stephen ; Hernández-Zaragoza, Diana Iraíz ; Bravo-Acevedo, Alicia ; Immel, Alexander ; Salgado-Galicia, Norma ; Zúñiga, Joaquín ; Yunis, Edmond J. ; Bekker-Méndez, Carolina ; Granados, Julio</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c362t-29a8ec1d2a5010ca7dd30cd4839a3de6bfc165aa75178403887c95bd8f49a2103</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Admixture</topic><topic>HLA</topic><topic>Immunogenetics</topic><topic>Population genetics</topic><topic>Tabasco</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Solís-Martínez, Raúl</creatorcontrib><creatorcontrib>Barquera, Rodrigo</creatorcontrib><creatorcontrib>Ponnandai-Shanmugavel, Komathi Sree</creatorcontrib><creatorcontrib>Vega-Martínez, María del Rosario</creatorcontrib><creatorcontrib>Vázquez-Castillo, Tannya Verónica</creatorcontrib><creatorcontrib>Arrieta-Bolaños, Esteban</creatorcontrib><creatorcontrib>Clayton, Stephen</creatorcontrib><creatorcontrib>Hernández-Zaragoza, Diana Iraíz</creatorcontrib><creatorcontrib>Bravo-Acevedo, Alicia</creatorcontrib><creatorcontrib>Immel, Alexander</creatorcontrib><creatorcontrib>Salgado-Galicia, Norma</creatorcontrib><creatorcontrib>Zúñiga, Joaquín</creatorcontrib><creatorcontrib>Yunis, Edmond J.</creatorcontrib><creatorcontrib>Bekker-Méndez, Carolina</creatorcontrib><creatorcontrib>Granados, Julio</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Human immunology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Solís-Martínez, Raúl</au><au>Barquera, Rodrigo</au><au>Ponnandai-Shanmugavel, Komathi Sree</au><au>Vega-Martínez, María del Rosario</au><au>Vázquez-Castillo, Tannya Verónica</au><au>Arrieta-Bolaños, Esteban</au><au>Clayton, Stephen</au><au>Hernández-Zaragoza, Diana Iraíz</au><au>Bravo-Acevedo, Alicia</au><au>Immel, Alexander</au><au>Salgado-Galicia, Norma</au><au>Zúñiga, Joaquín</au><au>Yunis, Edmond J.</au><au>Bekker-Méndez, Carolina</au><au>Granados, Julio</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity of HLA system in two populations from Tabasco, Mexico: Villahermosa and rural Tabasco</atitle><jtitle>Human immunology</jtitle><addtitle>Hum Immunol</addtitle><date>2020-09-01</date><risdate>2020</risdate><volume>81</volume><issue>9</issue><spage>560</spage><epage>562</epage><pages>560-562</pages><issn>0198-8859</issn><eissn>1879-1166</eissn><abstract>We studied HLA class I (HLA-A, -B) and class II (HLA-DRB1, -DQB1) alleles by PCR-SSP based typing in 224 Mexicans from the state of Tabasco living in the city of Villahermosa (N = 82) and rural communities (N = 142), to obtain information regarding allelic and haplotypic frequencies. We found that the most frequent haplotypes in Tabasco include 13 Native American and two European haplotypes. Admixture estimates revealed that the main genetic components in Tabasco are Native American (67.79 ± 1.59% by ML; 56.25% of Native American haplotypes) and European (27.21 ± 3.97% by ML; 29.91% of European haplotypes), and a less prominent African genetic component (5.01 ± 4.42% by ML; 8.93% of African haplotypes).</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>31350050</pmid><doi>10.1016/j.humimm.2019.07.286</doi><tpages>3</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0198-8859 |
| ispartof | Human immunology, 2020-09, Vol.81 (9), p.560-562 |
| issn | 0198-8859 1879-1166 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2265749662 |
| source | Elsevier ScienceDirect Journals Complete |
| subjects | Admixture HLA Immunogenetics Population genetics Tabasco |
| title | Genetic diversity of HLA system in two populations from Tabasco, Mexico: Villahermosa and rural Tabasco |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-26T15%3A23%3A05IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genetic%20diversity%20of%20HLA%20system%20in%20two%20populations%20from%20Tabasco,%20Mexico:%20Villahermosa%20and%20rural%20Tabasco&rft.jtitle=Human%20immunology&rft.au=Sol%C3%ADs-Mart%C3%ADnez,%20Ra%C3%BAl&rft.date=2020-09-01&rft.volume=81&rft.issue=9&rft.spage=560&rft.epage=562&rft.pages=560-562&rft.issn=0198-8859&rft.eissn=1879-1166&rft_id=info:doi/10.1016/j.humimm.2019.07.286&rft_dat=%3Cproquest_cross%3E2265749662%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2265749662&rft_id=info:pmid/31350050&rft_els_id=S0198885919309632&rfr_iscdi=true |