Experimental design of a simple medium for the bioluminescence of Aliivibrio fischeri and mathematical modelling for growth estimation
Increasing numbers of studies are using Aliivibrio fischeri (A. fischeri), a marine bioluminescent bacterium as a model, however the culture medium used for its growth are complex and expensive. The objectives of this study were: (1) to evaluate the effect of yeast extract, tryptone, and NaCl to sel...
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| Veröffentlicht in: | Luminescence (Chichester, England) England), 2019-12, Vol.34 (8), p.859-869 |
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| creator | Castillo‐Gómez, Odette Ramírez‐Rivera, Víctor M. Canto‐Canché, Blondy B. Valdez‐Ojeda, Ruby A. |
| description | Increasing numbers of studies are using Aliivibrio fischeri (A. fischeri), a marine bioluminescent bacterium as a model, however the culture medium used for its growth are complex and expensive. The objectives of this study were: (1) to evaluate the effect of yeast extract, tryptone, and NaCl to select a simple and inexpensive culture medium suitable for A. fischeri growth and bioluminescence induction; and (2) to compare the performance of mathematical models to predict the growth of A. fischeri. A fractional factorial design was performed to evaluate the effect of yeast extract, tryptone, and sodium chloride on the luminescence of A. fischeri. The result showed that sodium chloride is the most important factor, congruent with its inducer role in bioluminescence. The best medium for bioluminescence induction was selected through an optimization plot, this medium is inexpensive, and generates the same luminescence as commercial formulations. The estimation of A. fischeri growth at OD600 measurement was statistically analyzed. All evaluated models fitted the data adequately (r2 > 0.96). The nonlinear models Gompertz, Richards and logistic provided a lower variation and a better fit of the growth estimation (r2>0.99), showing that these mathematical models can be used for the accurate growth prediction of A. fischeri. |
| doi_str_mv | 10.1002/bio.3683 |
| format | Article |
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The objectives of this study were: (1) to evaluate the effect of yeast extract, tryptone, and NaCl to select a simple and inexpensive culture medium suitable for A. fischeri growth and bioluminescence induction; and (2) to compare the performance of mathematical models to predict the growth of A. fischeri. A fractional factorial design was performed to evaluate the effect of yeast extract, tryptone, and sodium chloride on the luminescence of A. fischeri. The result showed that sodium chloride is the most important factor, congruent with its inducer role in bioluminescence. The best medium for bioluminescence induction was selected through an optimization plot, this medium is inexpensive, and generates the same luminescence as commercial formulations. The estimation of A. fischeri growth at OD600 measurement was statistically analyzed. All evaluated models fitted the data adequately (r2 > 0.96). The nonlinear models Gompertz, Richards and logistic provided a lower variation and a better fit of the growth estimation (r2>0.99), showing that these mathematical models can be used for the accurate growth prediction of A. fischeri.</description><identifier>ISSN: 1522-7235</identifier><identifier>EISSN: 1522-7243</identifier><identifier>DOI: 10.1002/bio.3683</identifier><identifier>PMID: 31347246</identifier><language>eng</language><publisher>England: Wiley Subscription Services, Inc</publisher><subject>Aliivibrio fischeri ; Aliivibrio fischeri - growth & development ; Aliivibrio fischeri - isolation & purification ; Bioluminescence ; Culture media ; Design of experiments ; Experimental design ; Fractional factorial design ; Growth ; growth estimation ; Linear Models ; Luminescence ; Luminescent Measurements ; Mathematical analysis ; Mathematical models ; Models, Statistical ; nonlinear mathematical models ; Optimization ; Sodium ; Sodium chloride ; Software ; Statistical analysis ; Yeast ; Yeasts</subject><ispartof>Luminescence (Chichester, England), 2019-12, Vol.34 (8), p.859-869</ispartof><rights>2019 John Wiley & Sons, Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2643-804d4abf296a742a0e311123a2ee44c6dac2f00457f9e8432033fd3b343ef2843</citedby><cites>FETCH-LOGICAL-c2643-804d4abf296a742a0e311123a2ee44c6dac2f00457f9e8432033fd3b343ef2843</cites><orcidid>0000-0002-2741-9851 ; 0000-0003-0446-9503 ; 0000-0002-4398-1350 ; 0000-0002-0977-2053</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fbio.3683$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fbio.3683$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31347246$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Castillo‐Gómez, Odette</creatorcontrib><creatorcontrib>Ramírez‐Rivera, Víctor M.</creatorcontrib><creatorcontrib>Canto‐Canché, Blondy B.</creatorcontrib><creatorcontrib>Valdez‐Ojeda, Ruby A.</creatorcontrib><title>Experimental design of a simple medium for the bioluminescence of Aliivibrio fischeri and mathematical modelling for growth estimation</title><title>Luminescence (Chichester, England)</title><addtitle>Luminescence</addtitle><description>Increasing numbers of studies are using Aliivibrio fischeri (A. fischeri), a marine bioluminescent bacterium as a model, however the culture medium used for its growth are complex and expensive. 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The nonlinear models Gompertz, Richards and logistic provided a lower variation and a better fit of the growth estimation (r2>0.99), showing that these mathematical models can be used for the accurate growth prediction of A. fischeri.</description><subject>Aliivibrio fischeri</subject><subject>Aliivibrio fischeri - growth & development</subject><subject>Aliivibrio fischeri - isolation & purification</subject><subject>Bioluminescence</subject><subject>Culture media</subject><subject>Design of experiments</subject><subject>Experimental design</subject><subject>Fractional factorial design</subject><subject>Growth</subject><subject>growth estimation</subject><subject>Linear Models</subject><subject>Luminescence</subject><subject>Luminescent Measurements</subject><subject>Mathematical analysis</subject><subject>Mathematical models</subject><subject>Models, Statistical</subject><subject>nonlinear mathematical models</subject><subject>Optimization</subject><subject>Sodium</subject><subject>Sodium chloride</subject><subject>Software</subject><subject>Statistical analysis</subject><subject>Yeast</subject><subject>Yeasts</subject><issn>1522-7235</issn><issn>1522-7243</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kc9O3DAQh60KVChU6hNUlrhwCbVnHO_uERBQJCQucLacZLxrlNhbewPlBfrcOPzZA1IvtjX6_M3oN4z9kOJECgG_Gh9PUM_xC9uXNUA1A4U72zfWe-xbzg9CCK314ivbQ4mqMHqf_bv4u6bkBwob2_OOsl8GHh23PPth3RMfqPPjwF1MfLMiXjr14-AD5ZZCSxN62nv_6JvkI3c-t6ui4zZ0fLDlQzl8W8xD7KjvfVi-mpYpPm1WnPLGT0AMh2zX2T7T9_f7gN1fXtyd_65ubq-uz09vqha0wmouVKds42Ch7UyBFYRSSkALREq1urMtOCFUPXMLmisEgeg6bFAhOSiFA3b85l2n-Gcs_c1QRi6T2UBxzAZA1zM1r9WEHn1CH-KYQpnOAAIsFMoS7VbYpphzImfWJU2bno0UZtqNKYmZaTcF_fkuHJuS6hb8WEYBqjfgyff0_F-RObu-fRW-AIDemRM</recordid><startdate>201912</startdate><enddate>201912</enddate><creator>Castillo‐Gómez, Odette</creator><creator>Ramírez‐Rivera, Víctor M.</creator><creator>Canto‐Canché, Blondy B.</creator><creator>Valdez‐Ojeda, Ruby A.</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QP</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7U5</scope><scope>7U7</scope><scope>8BQ</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>H8G</scope><scope>H95</scope><scope>JG9</scope><scope>JQ2</scope><scope>KR7</scope><scope>L.G</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-2741-9851</orcidid><orcidid>https://orcid.org/0000-0003-0446-9503</orcidid><orcidid>https://orcid.org/0000-0002-4398-1350</orcidid><orcidid>https://orcid.org/0000-0002-0977-2053</orcidid></search><sort><creationdate>201912</creationdate><title>Experimental design of a simple medium for the bioluminescence of Aliivibrio fischeri and mathematical modelling for growth estimation</title><author>Castillo‐Gómez, Odette ; 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| ispartof | Luminescence (Chichester, England), 2019-12, Vol.34 (8), p.859-869 |
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| source | MEDLINE; Wiley Online Library Journals Frontfile Complete |
| subjects | Aliivibrio fischeri Aliivibrio fischeri - growth & development Aliivibrio fischeri - isolation & purification Bioluminescence Culture media Design of experiments Experimental design Fractional factorial design Growth growth estimation Linear Models Luminescence Luminescent Measurements Mathematical analysis Mathematical models Models, Statistical nonlinear mathematical models Optimization Sodium Sodium chloride Software Statistical analysis Yeast Yeasts |
| title | Experimental design of a simple medium for the bioluminescence of Aliivibrio fischeri and mathematical modelling for growth estimation |
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