High false‐positive non‐invasive prenatal screening results for sex chromosome abnormalities: Are maternal factors the culprit?

Objective To explore the impact of maternal sex chromosome aneuploidies (SCAs) and copy number variation (CNV) on false‐positive results of non‐invasive prenatal screening (NIPS) for predicting foetal SCAs. Methods In total, 22 844 pregnant women were recruited to undergo NIPS. Pregnant women with h...

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Veröffentlicht in:Prenatal diagnosis 2020-03, Vol.40 (4), p.463-469
Hauptverfasser: Zhang, Bin, Zhou, Qin, Chen, Yingping, Shi, Ye, Zheng, Fangxiu, Liu, Jianbing, Yu, Bin
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container_issue 4
container_start_page 463
container_title Prenatal diagnosis
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creator Zhang, Bin
Zhou, Qin
Chen, Yingping
Shi, Ye
Zheng, Fangxiu
Liu, Jianbing
Yu, Bin
description Objective To explore the impact of maternal sex chromosome aneuploidies (SCAs) and copy number variation (CNV) on false‐positive results of non‐invasive prenatal screening (NIPS) for predicting foetal SCAs. Methods In total, 22 844 pregnant women were recruited to undergo NIPS. Pregnant women with high‐risk of SCAs underwent prenatal diagnosis and maternal copy number variation sequencing (CNV‐seq). Results Among 117 women with high‐risk of SCAs, 72 accepted prenatal diagnosis, 86 accepted maternal CNV‐seq, and 21 had maternal sex chromosome abnormalities. The abnormality rate was significantly higher than women at low‐risk of SCAs (24.42% vs 3.51%). Using a novel parameter cffDNA (ChrX)/cffDNA, when the ratio was greater than 2, all foetuses had normal karyotype, and 75.0% (6/8) had abnormal maternal chromosome X. If the ratio was less than or equal to 2, only 10% (4/40) of the mothers had chromosome X CNV alterations, while 33.3% (13/40) of their foetuses had sex chromosomes CNV abnormalities. Conclusions Approximately 25% of pregnant women with SCAs predicted by NIPS had sex chromosome abnormalities as determined by CNV‐seq. The ratio of cffDNA (ChrX)/cffDNA can tentatively distinguish the maternal or foetal origin of abnormal cell‐free DNA. In a reanalysis of previous NIPS data, false‐positive results caused by maternal CNV might be elucidated. What's already known about this topic? Non‐invasive prenatal screening (NIPS) for the detection of foetal chromosomal aneuploidy by analysing cell‐free foetal DNA (cffDNA) in the plasma of pregnant women was quickly introduced to clinical practice. The positive predictive value (PPV) of sex chromosome aneuploidies (SCAs) is significantly lower compared with autosomal trisomies. There are various possible causes of a false‐positive NIPS result, including a vanished twin, maternal tumours, maternal mosaicism, confined placental mosaicism, and maternal copy number variation (CNV). What does this study add? In this study, our data show maternal sex chromosome abnormalities (including aneuploidy and CNV) might be an important factor contributing to false‐positive SCAs among 86 pregnant women with foetal SCAs predicted by NIPS, and 20% of false‐positive SCA results were caused by maternal sex chromosome abnormalities. In addition, 23.08% of foetal chromosome X (ChrX) CNV was inherited from the mother. Using the ratio of cffDNA (ChrX)/cffDNA, the SCAs predicted by NIPS were initially distinguished to be maternal or foe
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Methods In total, 22 844 pregnant women were recruited to undergo NIPS. Pregnant women with high‐risk of SCAs underwent prenatal diagnosis and maternal copy number variation sequencing (CNV‐seq). Results Among 117 women with high‐risk of SCAs, 72 accepted prenatal diagnosis, 86 accepted maternal CNV‐seq, and 21 had maternal sex chromosome abnormalities. The abnormality rate was significantly higher than women at low‐risk of SCAs (24.42% vs 3.51%). Using a novel parameter cffDNA (ChrX)/cffDNA, when the ratio was greater than 2, all foetuses had normal karyotype, and 75.0% (6/8) had abnormal maternal chromosome X. If the ratio was less than or equal to 2, only 10% (4/40) of the mothers had chromosome X CNV alterations, while 33.3% (13/40) of their foetuses had sex chromosomes CNV abnormalities. Conclusions Approximately 25% of pregnant women with SCAs predicted by NIPS had sex chromosome abnormalities as determined by CNV‐seq. The ratio of cffDNA (ChrX)/cffDNA can tentatively distinguish the maternal or foetal origin of abnormal cell‐free DNA. In a reanalysis of previous NIPS data, false‐positive results caused by maternal CNV might be elucidated. What's already known about this topic? Non‐invasive prenatal screening (NIPS) for the detection of foetal chromosomal aneuploidy by analysing cell‐free foetal DNA (cffDNA) in the plasma of pregnant women was quickly introduced to clinical practice. The positive predictive value (PPV) of sex chromosome aneuploidies (SCAs) is significantly lower compared with autosomal trisomies. There are various possible causes of a false‐positive NIPS result, including a vanished twin, maternal tumours, maternal mosaicism, confined placental mosaicism, and maternal copy number variation (CNV). What does this study add? In this study, our data show maternal sex chromosome abnormalities (including aneuploidy and CNV) might be an important factor contributing to false‐positive SCAs among 86 pregnant women with foetal SCAs predicted by NIPS, and 20% of false‐positive SCA results were caused by maternal sex chromosome abnormalities. In addition, 23.08% of foetal chromosome X (ChrX) CNV was inherited from the mother. Using the ratio of cffDNA (ChrX)/cffDNA, the SCAs predicted by NIPS were initially distinguished to be maternal or foetal origin and reduced the false‐positive results due to maternal CNV.</description><identifier>ISSN: 0197-3851</identifier><identifier>EISSN: 1097-0223</identifier><identifier>DOI: 10.1002/pd.5529</identifier><identifier>PMID: 31318441</identifier><language>eng</language><publisher>England: Wiley Subscription Services, Inc</publisher><subject>Abnormalities ; Amniocentesis ; Aneuploidy ; Cell-Free Nucleic Acids - analysis ; Cell-Free Nucleic Acids - genetics ; Chromosome aberrations ; Chromosomes ; Chromosomes, Human, X - genetics ; Copy number ; Deoxyribonucleic acid ; Diagnosis ; DNA ; DNA Copy Number Variations - genetics ; False Positive Reactions ; Female ; Fetuses ; Humans ; Karyotypes ; Klinefelter Syndrome - diagnosis ; Male ; Noninvasive Prenatal Testing ; Pregnancy ; Prenatal development ; Prenatal diagnosis ; Risk acceptance ; Screening ; Sequences ; Sex ; Sex Chromosome Aberrations ; Sex Chromosome Disorders - diagnosis ; Sex Chromosome Disorders of Sex Development - diagnosis ; Sex chromosomes ; Trisomy - diagnosis ; Turner Syndrome - diagnosis ; XYY Karyotype - diagnosis</subject><ispartof>Prenatal diagnosis, 2020-03, Vol.40 (4), p.463-469</ispartof><rights>2019 John Wiley &amp; Sons, Ltd.</rights><rights>2020 John Wiley &amp; Sons, Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3459-e7f218d3aba02d94cd1d931ddcc76bc68ec55233d434df7a2b77016e844a6dee3</citedby><cites>FETCH-LOGICAL-c3459-e7f218d3aba02d94cd1d931ddcc76bc68ec55233d434df7a2b77016e844a6dee3</cites><orcidid>0000-0001-7796-7314</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fpd.5529$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fpd.5529$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27903,27904,45553,45554</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31318441$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Bin</creatorcontrib><creatorcontrib>Zhou, Qin</creatorcontrib><creatorcontrib>Chen, Yingping</creatorcontrib><creatorcontrib>Shi, Ye</creatorcontrib><creatorcontrib>Zheng, Fangxiu</creatorcontrib><creatorcontrib>Liu, Jianbing</creatorcontrib><creatorcontrib>Yu, Bin</creatorcontrib><title>High false‐positive non‐invasive prenatal screening results for sex chromosome abnormalities: Are maternal factors the culprit?</title><title>Prenatal diagnosis</title><addtitle>Prenat Diagn</addtitle><description>Objective To explore the impact of maternal sex chromosome aneuploidies (SCAs) and copy number variation (CNV) on false‐positive results of non‐invasive prenatal screening (NIPS) for predicting foetal SCAs. Methods In total, 22 844 pregnant women were recruited to undergo NIPS. Pregnant women with high‐risk of SCAs underwent prenatal diagnosis and maternal copy number variation sequencing (CNV‐seq). Results Among 117 women with high‐risk of SCAs, 72 accepted prenatal diagnosis, 86 accepted maternal CNV‐seq, and 21 had maternal sex chromosome abnormalities. The abnormality rate was significantly higher than women at low‐risk of SCAs (24.42% vs 3.51%). Using a novel parameter cffDNA (ChrX)/cffDNA, when the ratio was greater than 2, all foetuses had normal karyotype, and 75.0% (6/8) had abnormal maternal chromosome X. If the ratio was less than or equal to 2, only 10% (4/40) of the mothers had chromosome X CNV alterations, while 33.3% (13/40) of their foetuses had sex chromosomes CNV abnormalities. Conclusions Approximately 25% of pregnant women with SCAs predicted by NIPS had sex chromosome abnormalities as determined by CNV‐seq. The ratio of cffDNA (ChrX)/cffDNA can tentatively distinguish the maternal or foetal origin of abnormal cell‐free DNA. In a reanalysis of previous NIPS data, false‐positive results caused by maternal CNV might be elucidated. What's already known about this topic? Non‐invasive prenatal screening (NIPS) for the detection of foetal chromosomal aneuploidy by analysing cell‐free foetal DNA (cffDNA) in the plasma of pregnant women was quickly introduced to clinical practice. The positive predictive value (PPV) of sex chromosome aneuploidies (SCAs) is significantly lower compared with autosomal trisomies. There are various possible causes of a false‐positive NIPS result, including a vanished twin, maternal tumours, maternal mosaicism, confined placental mosaicism, and maternal copy number variation (CNV). What does this study add? In this study, our data show maternal sex chromosome abnormalities (including aneuploidy and CNV) might be an important factor contributing to false‐positive SCAs among 86 pregnant women with foetal SCAs predicted by NIPS, and 20% of false‐positive SCA results were caused by maternal sex chromosome abnormalities. In addition, 23.08% of foetal chromosome X (ChrX) CNV was inherited from the mother. 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Zhou, Qin ; Chen, Yingping ; Shi, Ye ; Zheng, Fangxiu ; Liu, Jianbing ; Yu, Bin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3459-e7f218d3aba02d94cd1d931ddcc76bc68ec55233d434df7a2b77016e844a6dee3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Abnormalities</topic><topic>Amniocentesis</topic><topic>Aneuploidy</topic><topic>Cell-Free Nucleic Acids - analysis</topic><topic>Cell-Free Nucleic Acids - genetics</topic><topic>Chromosome aberrations</topic><topic>Chromosomes</topic><topic>Chromosomes, Human, X - genetics</topic><topic>Copy number</topic><topic>Deoxyribonucleic acid</topic><topic>Diagnosis</topic><topic>DNA</topic><topic>DNA Copy Number Variations - genetics</topic><topic>False Positive Reactions</topic><topic>Female</topic><topic>Fetuses</topic><topic>Humans</topic><topic>Karyotypes</topic><topic>Klinefelter Syndrome - diagnosis</topic><topic>Male</topic><topic>Noninvasive Prenatal Testing</topic><topic>Pregnancy</topic><topic>Prenatal development</topic><topic>Prenatal diagnosis</topic><topic>Risk acceptance</topic><topic>Screening</topic><topic>Sequences</topic><topic>Sex</topic><topic>Sex Chromosome Aberrations</topic><topic>Sex Chromosome Disorders - diagnosis</topic><topic>Sex Chromosome Disorders of Sex Development - diagnosis</topic><topic>Sex chromosomes</topic><topic>Trisomy - diagnosis</topic><topic>Turner Syndrome - diagnosis</topic><topic>XYY Karyotype - diagnosis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Bin</creatorcontrib><creatorcontrib>Zhou, Qin</creatorcontrib><creatorcontrib>Chen, Yingping</creatorcontrib><creatorcontrib>Shi, Ye</creatorcontrib><creatorcontrib>Zheng, Fangxiu</creatorcontrib><creatorcontrib>Liu, Jianbing</creatorcontrib><creatorcontrib>Yu, Bin</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium &amp; Calcified Tissue Abstracts</collection><collection>Immunology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Prenatal diagnosis</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Bin</au><au>Zhou, Qin</au><au>Chen, Yingping</au><au>Shi, Ye</au><au>Zheng, Fangxiu</au><au>Liu, Jianbing</au><au>Yu, Bin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>High false‐positive non‐invasive prenatal screening results for sex chromosome abnormalities: Are maternal factors the culprit?</atitle><jtitle>Prenatal diagnosis</jtitle><addtitle>Prenat Diagn</addtitle><date>2020-03</date><risdate>2020</risdate><volume>40</volume><issue>4</issue><spage>463</spage><epage>469</epage><pages>463-469</pages><issn>0197-3851</issn><eissn>1097-0223</eissn><abstract>Objective To explore the impact of maternal sex chromosome aneuploidies (SCAs) and copy number variation (CNV) on false‐positive results of non‐invasive prenatal screening (NIPS) for predicting foetal SCAs. Methods In total, 22 844 pregnant women were recruited to undergo NIPS. Pregnant women with high‐risk of SCAs underwent prenatal diagnosis and maternal copy number variation sequencing (CNV‐seq). Results Among 117 women with high‐risk of SCAs, 72 accepted prenatal diagnosis, 86 accepted maternal CNV‐seq, and 21 had maternal sex chromosome abnormalities. The abnormality rate was significantly higher than women at low‐risk of SCAs (24.42% vs 3.51%). Using a novel parameter cffDNA (ChrX)/cffDNA, when the ratio was greater than 2, all foetuses had normal karyotype, and 75.0% (6/8) had abnormal maternal chromosome X. If the ratio was less than or equal to 2, only 10% (4/40) of the mothers had chromosome X CNV alterations, while 33.3% (13/40) of their foetuses had sex chromosomes CNV abnormalities. Conclusions Approximately 25% of pregnant women with SCAs predicted by NIPS had sex chromosome abnormalities as determined by CNV‐seq. The ratio of cffDNA (ChrX)/cffDNA can tentatively distinguish the maternal or foetal origin of abnormal cell‐free DNA. In a reanalysis of previous NIPS data, false‐positive results caused by maternal CNV might be elucidated. What's already known about this topic? Non‐invasive prenatal screening (NIPS) for the detection of foetal chromosomal aneuploidy by analysing cell‐free foetal DNA (cffDNA) in the plasma of pregnant women was quickly introduced to clinical practice. The positive predictive value (PPV) of sex chromosome aneuploidies (SCAs) is significantly lower compared with autosomal trisomies. There are various possible causes of a false‐positive NIPS result, including a vanished twin, maternal tumours, maternal mosaicism, confined placental mosaicism, and maternal copy number variation (CNV). What does this study add? In this study, our data show maternal sex chromosome abnormalities (including aneuploidy and CNV) might be an important factor contributing to false‐positive SCAs among 86 pregnant women with foetal SCAs predicted by NIPS, and 20% of false‐positive SCA results were caused by maternal sex chromosome abnormalities. In addition, 23.08% of foetal chromosome X (ChrX) CNV was inherited from the mother. Using the ratio of cffDNA (ChrX)/cffDNA, the SCAs predicted by NIPS were initially distinguished to be maternal or foetal origin and reduced the false‐positive results due to maternal CNV.</abstract><cop>England</cop><pub>Wiley Subscription Services, Inc</pub><pmid>31318441</pmid><doi>10.1002/pd.5529</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0001-7796-7314</orcidid></addata></record>
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subjects Abnormalities
Amniocentesis
Aneuploidy
Cell-Free Nucleic Acids - analysis
Cell-Free Nucleic Acids - genetics
Chromosome aberrations
Chromosomes
Chromosomes, Human, X - genetics
Copy number
Deoxyribonucleic acid
Diagnosis
DNA
DNA Copy Number Variations - genetics
False Positive Reactions
Female
Fetuses
Humans
Karyotypes
Klinefelter Syndrome - diagnosis
Male
Noninvasive Prenatal Testing
Pregnancy
Prenatal development
Prenatal diagnosis
Risk acceptance
Screening
Sequences
Sex
Sex Chromosome Aberrations
Sex Chromosome Disorders - diagnosis
Sex Chromosome Disorders of Sex Development - diagnosis
Sex chromosomes
Trisomy - diagnosis
Turner Syndrome - diagnosis
XYY Karyotype - diagnosis
title High false‐positive non‐invasive prenatal screening results for sex chromosome abnormalities: Are maternal factors the culprit?
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