Biallelic variants in CTU2 cause DREAM‐PL syndrome and impair thiolation of tRNA wobble U34

The wobble position in the anticodon loop of transfer ribonucleic acid (tRNA) is subject to numerous posttranscriptional modifications. In particular, thiolation of the wobble uridine has been shown to play an important role in codon‐anticodon interactions. This modification is catalyzed by a highly...

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Veröffentlicht in:Human mutation 2019-11, Vol.40 (11), p.2108-2120
Hauptverfasser: Shaheen, Ranad, Mark, Paul, Prevost, Christopher T., AlKindi, Adila, Alhag, Ahmad, Estwani, Fatima, Al‐Sheddi, Tarfa, Alobeid, Eman, Alenazi, Mona M., Ewida, Nour, Ibrahim, Niema, Hashem, Mais, Abdulwahab, Firdous, Bryant, Emily M., Spinelli, Egidio, Millichap, John, Barnett, Sarah S., Kearney, Hutton M., Accogli, Andrea, Scala, Marcello, Capra, Valeria, Nigro, Vincenzo, Fu, Dragony, Alkuraya, Fowzan S.
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container_end_page 2120
container_issue 11
container_start_page 2108
container_title Human mutation
container_volume 40
creator Shaheen, Ranad
Mark, Paul
Prevost, Christopher T.
AlKindi, Adila
Alhag, Ahmad
Estwani, Fatima
Al‐Sheddi, Tarfa
Alobeid, Eman
Alenazi, Mona M.
Ewida, Nour
Ibrahim, Niema
Hashem, Mais
Abdulwahab, Firdous
Bryant, Emily M.
Spinelli, Egidio
Millichap, John
Barnett, Sarah S.
Kearney, Hutton M.
Accogli, Andrea
Scala, Marcello
Capra, Valeria
Nigro, Vincenzo
Fu, Dragony
Alkuraya, Fowzan S.
description The wobble position in the anticodon loop of transfer ribonucleic acid (tRNA) is subject to numerous posttranscriptional modifications. In particular, thiolation of the wobble uridine has been shown to play an important role in codon‐anticodon interactions. This modification is catalyzed by a highly conserved CTU1/CTU2 complex, disruption of which has been shown to cause abnormal phenotypes in yeast, worms, and plants. We have previously suggested that a single founder splicing variant in human CTU2 causes a novel multiple congenital anomalies syndrome consisting of dysmorphic facies, renal agenesis, ambiguous genitalia, microcephaly, polydactyly, and lissencephaly (DREAM‐PL). In this study, we describe five new patients with DREAM‐PL phenotype and whose molecular analysis expands the allelic heterogeneity of the syndrome to five different alleles; four of which predict protein truncation. Functional characterization using patient‐derived cells for each of these alleles, as well as the original founder allele; revealed a specific impairment of wobble uridine thiolation in all known thiol‐containing tRNAs. Our data establish a recognizable CTU2‐linked autosomal recessive syndrome in humans characterized by defective thiolation of the wobble uridine. The potential deleterious consequences for the translational efficiency and fidelity during development as a mechanism for pathogenicity represent an attractive target of future investigations.
doi_str_mv 10.1002/humu.23870
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In particular, thiolation of the wobble uridine has been shown to play an important role in codon‐anticodon interactions. This modification is catalyzed by a highly conserved CTU1/CTU2 complex, disruption of which has been shown to cause abnormal phenotypes in yeast, worms, and plants. We have previously suggested that a single founder splicing variant in human CTU2 causes a novel multiple congenital anomalies syndrome consisting of dysmorphic facies, renal agenesis, ambiguous genitalia, microcephaly, polydactyly, and lissencephaly (DREAM‐PL). In this study, we describe five new patients with DREAM‐PL phenotype and whose molecular analysis expands the allelic heterogeneity of the syndrome to five different alleles; four of which predict protein truncation. Functional characterization using patient‐derived cells for each of these alleles, as well as the original founder allele; revealed a specific impairment of wobble uridine thiolation in all known thiol‐containing tRNAs. 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The potential deleterious consequences for the translational efficiency and fidelity during development as a mechanism for pathogenicity represent an attractive target of future investigations.</description><subject>Abnormalities, Multiple - diagnosis</subject><subject>Abnormalities, Multiple - genetics</subject><subject>Alleles</subject><subject>ambiguous genitalia</subject><subject>Amino Acid Sequence</subject><subject>Congenital defects</subject><subject>Consanguinity</subject><subject>CTU2</subject><subject>DNA Mutational Analysis</subject><subject>dysmorphic facies</subject><subject>Facies</subject><subject>Female</subject><subject>Genetic Association Studies</subject><subject>Genetic Predisposition to Disease</subject><subject>Genetic Variation</subject><subject>Genitalia</subject><subject>Genotype</subject><subject>Humans</subject><subject>Lissencephaly</subject><subject>Magnetic Resonance Imaging</subject><subject>Male</subject><subject>Microcephaly</subject><subject>mutation</subject><subject>Pathogenicity</subject><subject>Phenotype</subject><subject>Phenotypes</subject><subject>Polydactyly</subject><subject>Post-transcription</subject><subject>Radiography</subject><subject>renal agenesis</subject><subject>RNA, Transfer - chemistry</subject><subject>RNA, Transfer - genetics</subject><subject>RNA, Transfer - metabolism</subject><subject>Sequence Analysis, DNA</subject><subject>Severity of Illness Index</subject><subject>Splicing</subject><subject>Syndrome</subject><subject>tRNA</subject><subject>tRNA Methyltransferases - genetics</subject><subject>tRNA modification</subject><subject>Uridine</subject><subject>uridine thiolation</subject><issn>1059-7794</issn><issn>1098-1004</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kM1OGzEURq0KVCjthgdAltigSpP6dzxZhhAKUmirKLOsLM_YI4w842DPEGXXR-gz8iR1SGDRBbqLe3V19OnTAeAUoxFGiHy7H9phRGgh0AdwjNG4yNKbHWxvPs6EGLMj8CnGB4RQwTn9CI4opghjzo_B70urnDPO1vBJBau6PkLbwemyJLBWQzTwajGb3D3_-ftrDuOm08G3BqpOQ9uulA2wv7feqd76DvoG9osfE7j2VeUMLCn7DA4b5aL5st8noLyeLac32fzn99vpZJ7VdExRRkiFFcoZQTrXArNKaWpyjmui0yBOU3OtFRYFM9w0Oa6MyHNV44LpBmtOT8DFLncV_ONgYi9bG2vjnOqMH6IkhAuRVIk8oef_oQ9-CF1qJwlFgqKCMZaorzuqDj7GYBq5CrZVYSMxklvpcitdvkhP8Nk-cqhao9_QV8sJwDtgbZ3ZvBMlb8q7chf6DwNzin4</recordid><startdate>201911</startdate><enddate>201911</enddate><creator>Shaheen, Ranad</creator><creator>Mark, Paul</creator><creator>Prevost, Christopher T.</creator><creator>AlKindi, Adila</creator><creator>Alhag, Ahmad</creator><creator>Estwani, Fatima</creator><creator>Al‐Sheddi, Tarfa</creator><creator>Alobeid, Eman</creator><creator>Alenazi, Mona M.</creator><creator>Ewida, Nour</creator><creator>Ibrahim, Niema</creator><creator>Hashem, Mais</creator><creator>Abdulwahab, Firdous</creator><creator>Bryant, Emily M.</creator><creator>Spinelli, Egidio</creator><creator>Millichap, John</creator><creator>Barnett, Sarah S.</creator><creator>Kearney, Hutton M.</creator><creator>Accogli, Andrea</creator><creator>Scala, Marcello</creator><creator>Capra, Valeria</creator><creator>Nigro, Vincenzo</creator><creator>Fu, Dragony</creator><creator>Alkuraya, Fowzan S.</creator><general>Hindawi Limited</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-4158-341X</orcidid><orcidid>https://orcid.org/0000-0002-8725-8658</orcidid></search><sort><creationdate>201911</creationdate><title>Biallelic variants in CTU2 cause DREAM‐PL syndrome and impair thiolation of tRNA wobble U34</title><author>Shaheen, Ranad ; Mark, Paul ; Prevost, Christopher T. ; AlKindi, Adila ; Alhag, Ahmad ; Estwani, Fatima ; Al‐Sheddi, Tarfa ; Alobeid, Eman ; Alenazi, Mona M. ; Ewida, Nour ; Ibrahim, Niema ; Hashem, Mais ; Abdulwahab, Firdous ; Bryant, Emily M. ; Spinelli, Egidio ; Millichap, John ; Barnett, Sarah S. ; Kearney, Hutton M. ; Accogli, Andrea ; Scala, Marcello ; Capra, Valeria ; Nigro, Vincenzo ; Fu, Dragony ; Alkuraya, Fowzan S.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3930-22b1a06420d6d714bad3e651c2d2d2053000dda1784e5ef61be766ac184df1d53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Abnormalities, Multiple - diagnosis</topic><topic>Abnormalities, Multiple - genetics</topic><topic>Alleles</topic><topic>ambiguous genitalia</topic><topic>Amino Acid Sequence</topic><topic>Congenital defects</topic><topic>Consanguinity</topic><topic>CTU2</topic><topic>DNA Mutational Analysis</topic><topic>dysmorphic facies</topic><topic>Facies</topic><topic>Female</topic><topic>Genetic Association Studies</topic><topic>Genetic Predisposition to Disease</topic><topic>Genetic Variation</topic><topic>Genitalia</topic><topic>Genotype</topic><topic>Humans</topic><topic>Lissencephaly</topic><topic>Magnetic Resonance Imaging</topic><topic>Male</topic><topic>Microcephaly</topic><topic>mutation</topic><topic>Pathogenicity</topic><topic>Phenotype</topic><topic>Phenotypes</topic><topic>Polydactyly</topic><topic>Post-transcription</topic><topic>Radiography</topic><topic>renal agenesis</topic><topic>RNA, Transfer - chemistry</topic><topic>RNA, Transfer - genetics</topic><topic>RNA, Transfer - metabolism</topic><topic>Sequence Analysis, DNA</topic><topic>Severity of Illness Index</topic><topic>Splicing</topic><topic>Syndrome</topic><topic>tRNA</topic><topic>tRNA Methyltransferases - genetics</topic><topic>tRNA modification</topic><topic>Uridine</topic><topic>uridine thiolation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shaheen, Ranad</creatorcontrib><creatorcontrib>Mark, Paul</creatorcontrib><creatorcontrib>Prevost, Christopher T.</creatorcontrib><creatorcontrib>AlKindi, Adila</creatorcontrib><creatorcontrib>Alhag, Ahmad</creatorcontrib><creatorcontrib>Estwani, Fatima</creatorcontrib><creatorcontrib>Al‐Sheddi, Tarfa</creatorcontrib><creatorcontrib>Alobeid, Eman</creatorcontrib><creatorcontrib>Alenazi, Mona M.</creatorcontrib><creatorcontrib>Ewida, Nour</creatorcontrib><creatorcontrib>Ibrahim, Niema</creatorcontrib><creatorcontrib>Hashem, Mais</creatorcontrib><creatorcontrib>Abdulwahab, Firdous</creatorcontrib><creatorcontrib>Bryant, Emily M.</creatorcontrib><creatorcontrib>Spinelli, Egidio</creatorcontrib><creatorcontrib>Millichap, John</creatorcontrib><creatorcontrib>Barnett, Sarah S.</creatorcontrib><creatorcontrib>Kearney, Hutton M.</creatorcontrib><creatorcontrib>Accogli, Andrea</creatorcontrib><creatorcontrib>Scala, Marcello</creatorcontrib><creatorcontrib>Capra, Valeria</creatorcontrib><creatorcontrib>Nigro, Vincenzo</creatorcontrib><creatorcontrib>Fu, Dragony</creatorcontrib><creatorcontrib>Alkuraya, Fowzan S.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium &amp; 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subjects Abnormalities, Multiple - diagnosis
Abnormalities, Multiple - genetics
Alleles
ambiguous genitalia
Amino Acid Sequence
Congenital defects
Consanguinity
CTU2
DNA Mutational Analysis
dysmorphic facies
Facies
Female
Genetic Association Studies
Genetic Predisposition to Disease
Genetic Variation
Genitalia
Genotype
Humans
Lissencephaly
Magnetic Resonance Imaging
Male
Microcephaly
mutation
Pathogenicity
Phenotype
Phenotypes
Polydactyly
Post-transcription
Radiography
renal agenesis
RNA, Transfer - chemistry
RNA, Transfer - genetics
RNA, Transfer - metabolism
Sequence Analysis, DNA
Severity of Illness Index
Splicing
Syndrome
tRNA
tRNA Methyltransferases - genetics
tRNA modification
Uridine
uridine thiolation
title Biallelic variants in CTU2 cause DREAM‐PL syndrome and impair thiolation of tRNA wobble U34
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