Biallelic variants in CTU2 cause DREAM‐PL syndrome and impair thiolation of tRNA wobble U34
The wobble position in the anticodon loop of transfer ribonucleic acid (tRNA) is subject to numerous posttranscriptional modifications. In particular, thiolation of the wobble uridine has been shown to play an important role in codon‐anticodon interactions. This modification is catalyzed by a highly...
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Veröffentlicht in: | Human mutation 2019-11, Vol.40 (11), p.2108-2120 |
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creator | Shaheen, Ranad Mark, Paul Prevost, Christopher T. AlKindi, Adila Alhag, Ahmad Estwani, Fatima Al‐Sheddi, Tarfa Alobeid, Eman Alenazi, Mona M. Ewida, Nour Ibrahim, Niema Hashem, Mais Abdulwahab, Firdous Bryant, Emily M. Spinelli, Egidio Millichap, John Barnett, Sarah S. Kearney, Hutton M. Accogli, Andrea Scala, Marcello Capra, Valeria Nigro, Vincenzo Fu, Dragony Alkuraya, Fowzan S. |
description | The wobble position in the anticodon loop of transfer ribonucleic acid (tRNA) is subject to numerous posttranscriptional modifications. In particular, thiolation of the wobble uridine has been shown to play an important role in codon‐anticodon interactions. This modification is catalyzed by a highly conserved CTU1/CTU2 complex, disruption of which has been shown to cause abnormal phenotypes in yeast, worms, and plants. We have previously suggested that a single founder splicing variant in human CTU2 causes a novel multiple congenital anomalies syndrome consisting of dysmorphic facies, renal agenesis, ambiguous genitalia, microcephaly, polydactyly, and lissencephaly (DREAM‐PL). In this study, we describe five new patients with DREAM‐PL phenotype and whose molecular analysis expands the allelic heterogeneity of the syndrome to five different alleles; four of which predict protein truncation. Functional characterization using patient‐derived cells for each of these alleles, as well as the original founder allele; revealed a specific impairment of wobble uridine thiolation in all known thiol‐containing tRNAs. Our data establish a recognizable CTU2‐linked autosomal recessive syndrome in humans characterized by defective thiolation of the wobble uridine. The potential deleterious consequences for the translational efficiency and fidelity during development as a mechanism for pathogenicity represent an attractive target of future investigations. |
doi_str_mv | 10.1002/humu.23870 |
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In particular, thiolation of the wobble uridine has been shown to play an important role in codon‐anticodon interactions. This modification is catalyzed by a highly conserved CTU1/CTU2 complex, disruption of which has been shown to cause abnormal phenotypes in yeast, worms, and plants. We have previously suggested that a single founder splicing variant in human CTU2 causes a novel multiple congenital anomalies syndrome consisting of dysmorphic facies, renal agenesis, ambiguous genitalia, microcephaly, polydactyly, and lissencephaly (DREAM‐PL). In this study, we describe five new patients with DREAM‐PL phenotype and whose molecular analysis expands the allelic heterogeneity of the syndrome to five different alleles; four of which predict protein truncation. Functional characterization using patient‐derived cells for each of these alleles, as well as the original founder allele; revealed a specific impairment of wobble uridine thiolation in all known thiol‐containing tRNAs. Our data establish a recognizable CTU2‐linked autosomal recessive syndrome in humans characterized by defective thiolation of the wobble uridine. The potential deleterious consequences for the translational efficiency and fidelity during development as a mechanism for pathogenicity represent an attractive target of future investigations.</description><identifier>ISSN: 1059-7794</identifier><identifier>EISSN: 1098-1004</identifier><identifier>DOI: 10.1002/humu.23870</identifier><identifier>PMID: 31301155</identifier><language>eng</language><publisher>United States: Hindawi Limited</publisher><subject>Abnormalities, Multiple - diagnosis ; Abnormalities, Multiple - genetics ; Alleles ; ambiguous genitalia ; Amino Acid Sequence ; Congenital defects ; Consanguinity ; CTU2 ; DNA Mutational Analysis ; dysmorphic facies ; Facies ; Female ; Genetic Association Studies ; Genetic Predisposition to Disease ; Genetic Variation ; Genitalia ; Genotype ; Humans ; Lissencephaly ; Magnetic Resonance Imaging ; Male ; Microcephaly ; mutation ; Pathogenicity ; Phenotype ; Phenotypes ; Polydactyly ; Post-transcription ; Radiography ; renal agenesis ; RNA, Transfer - chemistry ; RNA, Transfer - genetics ; RNA, Transfer - metabolism ; Sequence Analysis, DNA ; Severity of Illness Index ; Splicing ; Syndrome ; tRNA ; tRNA Methyltransferases - genetics ; tRNA modification ; Uridine ; uridine thiolation</subject><ispartof>Human mutation, 2019-11, Vol.40 (11), p.2108-2120</ispartof><rights>2019 Wiley Periodicals, Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3930-22b1a06420d6d714bad3e651c2d2d2053000dda1784e5ef61be766ac184df1d53</citedby><cites>FETCH-LOGICAL-c3930-22b1a06420d6d714bad3e651c2d2d2053000dda1784e5ef61be766ac184df1d53</cites><orcidid>0000-0003-4158-341X ; 0000-0002-8725-8658</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fhumu.23870$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fhumu.23870$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,777,781,1412,27905,27906,45555,45556</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31301155$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Shaheen, Ranad</creatorcontrib><creatorcontrib>Mark, Paul</creatorcontrib><creatorcontrib>Prevost, Christopher T.</creatorcontrib><creatorcontrib>AlKindi, Adila</creatorcontrib><creatorcontrib>Alhag, Ahmad</creatorcontrib><creatorcontrib>Estwani, Fatima</creatorcontrib><creatorcontrib>Al‐Sheddi, Tarfa</creatorcontrib><creatorcontrib>Alobeid, Eman</creatorcontrib><creatorcontrib>Alenazi, Mona M.</creatorcontrib><creatorcontrib>Ewida, Nour</creatorcontrib><creatorcontrib>Ibrahim, Niema</creatorcontrib><creatorcontrib>Hashem, Mais</creatorcontrib><creatorcontrib>Abdulwahab, Firdous</creatorcontrib><creatorcontrib>Bryant, Emily M.</creatorcontrib><creatorcontrib>Spinelli, Egidio</creatorcontrib><creatorcontrib>Millichap, John</creatorcontrib><creatorcontrib>Barnett, Sarah S.</creatorcontrib><creatorcontrib>Kearney, Hutton M.</creatorcontrib><creatorcontrib>Accogli, Andrea</creatorcontrib><creatorcontrib>Scala, Marcello</creatorcontrib><creatorcontrib>Capra, Valeria</creatorcontrib><creatorcontrib>Nigro, Vincenzo</creatorcontrib><creatorcontrib>Fu, Dragony</creatorcontrib><creatorcontrib>Alkuraya, Fowzan S.</creatorcontrib><title>Biallelic variants in CTU2 cause DREAM‐PL syndrome and impair thiolation of tRNA wobble U34</title><title>Human mutation</title><addtitle>Hum Mutat</addtitle><description>The wobble position in the anticodon loop of transfer ribonucleic acid (tRNA) is subject to numerous posttranscriptional modifications. In particular, thiolation of the wobble uridine has been shown to play an important role in codon‐anticodon interactions. This modification is catalyzed by a highly conserved CTU1/CTU2 complex, disruption of which has been shown to cause abnormal phenotypes in yeast, worms, and plants. We have previously suggested that a single founder splicing variant in human CTU2 causes a novel multiple congenital anomalies syndrome consisting of dysmorphic facies, renal agenesis, ambiguous genitalia, microcephaly, polydactyly, and lissencephaly (DREAM‐PL). In this study, we describe five new patients with DREAM‐PL phenotype and whose molecular analysis expands the allelic heterogeneity of the syndrome to five different alleles; four of which predict protein truncation. Functional characterization using patient‐derived cells for each of these alleles, as well as the original founder allele; revealed a specific impairment of wobble uridine thiolation in all known thiol‐containing tRNAs. Our data establish a recognizable CTU2‐linked autosomal recessive syndrome in humans characterized by defective thiolation of the wobble uridine. The potential deleterious consequences for the translational efficiency and fidelity during development as a mechanism for pathogenicity represent an attractive target of future investigations.</description><subject>Abnormalities, Multiple - diagnosis</subject><subject>Abnormalities, Multiple - genetics</subject><subject>Alleles</subject><subject>ambiguous genitalia</subject><subject>Amino Acid Sequence</subject><subject>Congenital defects</subject><subject>Consanguinity</subject><subject>CTU2</subject><subject>DNA Mutational Analysis</subject><subject>dysmorphic facies</subject><subject>Facies</subject><subject>Female</subject><subject>Genetic Association Studies</subject><subject>Genetic Predisposition to Disease</subject><subject>Genetic Variation</subject><subject>Genitalia</subject><subject>Genotype</subject><subject>Humans</subject><subject>Lissencephaly</subject><subject>Magnetic Resonance Imaging</subject><subject>Male</subject><subject>Microcephaly</subject><subject>mutation</subject><subject>Pathogenicity</subject><subject>Phenotype</subject><subject>Phenotypes</subject><subject>Polydactyly</subject><subject>Post-transcription</subject><subject>Radiography</subject><subject>renal agenesis</subject><subject>RNA, Transfer - chemistry</subject><subject>RNA, Transfer - genetics</subject><subject>RNA, Transfer - metabolism</subject><subject>Sequence Analysis, DNA</subject><subject>Severity of Illness Index</subject><subject>Splicing</subject><subject>Syndrome</subject><subject>tRNA</subject><subject>tRNA Methyltransferases - genetics</subject><subject>tRNA modification</subject><subject>Uridine</subject><subject>uridine thiolation</subject><issn>1059-7794</issn><issn>1098-1004</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kM1OGzEURq0KVCjthgdAltigSpP6dzxZhhAKUmirKLOsLM_YI4w842DPEGXXR-gz8iR1SGDRBbqLe3V19OnTAeAUoxFGiHy7H9phRGgh0AdwjNG4yNKbHWxvPs6EGLMj8CnGB4RQwTn9CI4opghjzo_B70urnDPO1vBJBau6PkLbwemyJLBWQzTwajGb3D3_-ftrDuOm08G3BqpOQ9uulA2wv7feqd76DvoG9osfE7j2VeUMLCn7DA4b5aL5st8noLyeLac32fzn99vpZJ7VdExRRkiFFcoZQTrXArNKaWpyjmui0yBOU3OtFRYFM9w0Oa6MyHNV44LpBmtOT8DFLncV_ONgYi9bG2vjnOqMH6IkhAuRVIk8oef_oQ9-CF1qJwlFgqKCMZaorzuqDj7GYBq5CrZVYSMxklvpcitdvkhP8Nk-cqhao9_QV8sJwDtgbZ3ZvBMlb8q7chf6DwNzin4</recordid><startdate>201911</startdate><enddate>201911</enddate><creator>Shaheen, Ranad</creator><creator>Mark, Paul</creator><creator>Prevost, Christopher T.</creator><creator>AlKindi, Adila</creator><creator>Alhag, Ahmad</creator><creator>Estwani, Fatima</creator><creator>Al‐Sheddi, Tarfa</creator><creator>Alobeid, Eman</creator><creator>Alenazi, Mona M.</creator><creator>Ewida, Nour</creator><creator>Ibrahim, Niema</creator><creator>Hashem, Mais</creator><creator>Abdulwahab, Firdous</creator><creator>Bryant, Emily M.</creator><creator>Spinelli, Egidio</creator><creator>Millichap, John</creator><creator>Barnett, Sarah S.</creator><creator>Kearney, Hutton M.</creator><creator>Accogli, Andrea</creator><creator>Scala, Marcello</creator><creator>Capra, Valeria</creator><creator>Nigro, Vincenzo</creator><creator>Fu, Dragony</creator><creator>Alkuraya, Fowzan S.</creator><general>Hindawi Limited</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-4158-341X</orcidid><orcidid>https://orcid.org/0000-0002-8725-8658</orcidid></search><sort><creationdate>201911</creationdate><title>Biallelic variants in CTU2 cause DREAM‐PL syndrome and impair thiolation of tRNA wobble U34</title><author>Shaheen, Ranad ; Mark, Paul ; Prevost, Christopher T. ; AlKindi, Adila ; Alhag, Ahmad ; Estwani, Fatima ; Al‐Sheddi, Tarfa ; Alobeid, Eman ; Alenazi, Mona M. ; Ewida, Nour ; Ibrahim, Niema ; Hashem, Mais ; Abdulwahab, Firdous ; Bryant, Emily M. ; Spinelli, Egidio ; Millichap, John ; Barnett, Sarah S. ; Kearney, Hutton M. ; Accogli, Andrea ; Scala, Marcello ; Capra, Valeria ; Nigro, Vincenzo ; Fu, Dragony ; Alkuraya, Fowzan S.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3930-22b1a06420d6d714bad3e651c2d2d2053000dda1784e5ef61be766ac184df1d53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Abnormalities, Multiple - diagnosis</topic><topic>Abnormalities, Multiple - genetics</topic><topic>Alleles</topic><topic>ambiguous genitalia</topic><topic>Amino Acid Sequence</topic><topic>Congenital defects</topic><topic>Consanguinity</topic><topic>CTU2</topic><topic>DNA Mutational Analysis</topic><topic>dysmorphic facies</topic><topic>Facies</topic><topic>Female</topic><topic>Genetic Association Studies</topic><topic>Genetic Predisposition to Disease</topic><topic>Genetic Variation</topic><topic>Genitalia</topic><topic>Genotype</topic><topic>Humans</topic><topic>Lissencephaly</topic><topic>Magnetic Resonance Imaging</topic><topic>Male</topic><topic>Microcephaly</topic><topic>mutation</topic><topic>Pathogenicity</topic><topic>Phenotype</topic><topic>Phenotypes</topic><topic>Polydactyly</topic><topic>Post-transcription</topic><topic>Radiography</topic><topic>renal agenesis</topic><topic>RNA, Transfer - chemistry</topic><topic>RNA, Transfer - genetics</topic><topic>RNA, Transfer - metabolism</topic><topic>Sequence Analysis, DNA</topic><topic>Severity of Illness Index</topic><topic>Splicing</topic><topic>Syndrome</topic><topic>tRNA</topic><topic>tRNA Methyltransferases - genetics</topic><topic>tRNA modification</topic><topic>Uridine</topic><topic>uridine thiolation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shaheen, Ranad</creatorcontrib><creatorcontrib>Mark, Paul</creatorcontrib><creatorcontrib>Prevost, Christopher T.</creatorcontrib><creatorcontrib>AlKindi, Adila</creatorcontrib><creatorcontrib>Alhag, Ahmad</creatorcontrib><creatorcontrib>Estwani, Fatima</creatorcontrib><creatorcontrib>Al‐Sheddi, Tarfa</creatorcontrib><creatorcontrib>Alobeid, Eman</creatorcontrib><creatorcontrib>Alenazi, Mona M.</creatorcontrib><creatorcontrib>Ewida, Nour</creatorcontrib><creatorcontrib>Ibrahim, Niema</creatorcontrib><creatorcontrib>Hashem, Mais</creatorcontrib><creatorcontrib>Abdulwahab, Firdous</creatorcontrib><creatorcontrib>Bryant, Emily M.</creatorcontrib><creatorcontrib>Spinelli, Egidio</creatorcontrib><creatorcontrib>Millichap, John</creatorcontrib><creatorcontrib>Barnett, Sarah S.</creatorcontrib><creatorcontrib>Kearney, Hutton M.</creatorcontrib><creatorcontrib>Accogli, Andrea</creatorcontrib><creatorcontrib>Scala, Marcello</creatorcontrib><creatorcontrib>Capra, Valeria</creatorcontrib><creatorcontrib>Nigro, Vincenzo</creatorcontrib><creatorcontrib>Fu, Dragony</creatorcontrib><creatorcontrib>Alkuraya, Fowzan S.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Human mutation</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shaheen, Ranad</au><au>Mark, Paul</au><au>Prevost, Christopher T.</au><au>AlKindi, Adila</au><au>Alhag, Ahmad</au><au>Estwani, Fatima</au><au>Al‐Sheddi, Tarfa</au><au>Alobeid, Eman</au><au>Alenazi, Mona M.</au><au>Ewida, Nour</au><au>Ibrahim, Niema</au><au>Hashem, Mais</au><au>Abdulwahab, Firdous</au><au>Bryant, Emily M.</au><au>Spinelli, Egidio</au><au>Millichap, John</au><au>Barnett, Sarah S.</au><au>Kearney, Hutton M.</au><au>Accogli, Andrea</au><au>Scala, Marcello</au><au>Capra, Valeria</au><au>Nigro, Vincenzo</au><au>Fu, Dragony</au><au>Alkuraya, Fowzan S.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Biallelic variants in CTU2 cause DREAM‐PL syndrome and impair thiolation of tRNA wobble U34</atitle><jtitle>Human mutation</jtitle><addtitle>Hum Mutat</addtitle><date>2019-11</date><risdate>2019</risdate><volume>40</volume><issue>11</issue><spage>2108</spage><epage>2120</epage><pages>2108-2120</pages><issn>1059-7794</issn><eissn>1098-1004</eissn><abstract>The wobble position in the anticodon loop of transfer ribonucleic acid (tRNA) is subject to numerous posttranscriptional modifications. In particular, thiolation of the wobble uridine has been shown to play an important role in codon‐anticodon interactions. This modification is catalyzed by a highly conserved CTU1/CTU2 complex, disruption of which has been shown to cause abnormal phenotypes in yeast, worms, and plants. We have previously suggested that a single founder splicing variant in human CTU2 causes a novel multiple congenital anomalies syndrome consisting of dysmorphic facies, renal agenesis, ambiguous genitalia, microcephaly, polydactyly, and lissencephaly (DREAM‐PL). In this study, we describe five new patients with DREAM‐PL phenotype and whose molecular analysis expands the allelic heterogeneity of the syndrome to five different alleles; four of which predict protein truncation. Functional characterization using patient‐derived cells for each of these alleles, as well as the original founder allele; revealed a specific impairment of wobble uridine thiolation in all known thiol‐containing tRNAs. Our data establish a recognizable CTU2‐linked autosomal recessive syndrome in humans characterized by defective thiolation of the wobble uridine. The potential deleterious consequences for the translational efficiency and fidelity during development as a mechanism for pathogenicity represent an attractive target of future investigations.</abstract><cop>United States</cop><pub>Hindawi Limited</pub><pmid>31301155</pmid><doi>10.1002/humu.23870</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0003-4158-341X</orcidid><orcidid>https://orcid.org/0000-0002-8725-8658</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Abnormalities, Multiple - diagnosis Abnormalities, Multiple - genetics Alleles ambiguous genitalia Amino Acid Sequence Congenital defects Consanguinity CTU2 DNA Mutational Analysis dysmorphic facies Facies Female Genetic Association Studies Genetic Predisposition to Disease Genetic Variation Genitalia Genotype Humans Lissencephaly Magnetic Resonance Imaging Male Microcephaly mutation Pathogenicity Phenotype Phenotypes Polydactyly Post-transcription Radiography renal agenesis RNA, Transfer - chemistry RNA, Transfer - genetics RNA, Transfer - metabolism Sequence Analysis, DNA Severity of Illness Index Splicing Syndrome tRNA tRNA Methyltransferases - genetics tRNA modification Uridine uridine thiolation |
title | Biallelic variants in CTU2 cause DREAM‐PL syndrome and impair thiolation of tRNA wobble U34 |
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