Epidemiology and risk factors for carbapenem-resistant Enterobacteriaceae colonisation and infections: case-controlled study from an academic medical center in a southern area of China

ABSTRACT OBJECTIVE While the emergence and spread of carbapenem-resistant Enterobacteriaceae (CRE) and related infections pose serious threats to global public health, the epidemiology and associated risk factors remain poorly understood and vary by geography. METHODS In a case-controlled retrospect...

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Veröffentlicht in:Pathogens and Disease 2019-06, Vol.77 (4), p.1
Hauptverfasser: Fang, Lili, Lu, Xiaohui, Xu, Heping, Ma, Xiaobo, Chen, Yilan, Liu, Yue, Hong, Guolin, Liang, Xianming
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container_issue 4
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container_title Pathogens and Disease
container_volume 77
creator Fang, Lili
Lu, Xiaohui
Xu, Heping
Ma, Xiaobo
Chen, Yilan
Liu, Yue
Hong, Guolin
Liang, Xianming
description ABSTRACT OBJECTIVE While the emergence and spread of carbapenem-resistant Enterobacteriaceae (CRE) and related infections pose serious threats to global public health, the epidemiology and associated risk factors remain poorly understood and vary by geography. METHODS In a case-controlled retrospective study, we examined the prevalence, patient background and risk factors for CRE colonisation and infections, and all patient-derived CRE from January 2015 to January 2017. Isolated carbapenem-susceptible Enterobacteriaceae (CSE) from 2875 enrolled patients were randomly selected during the study. RESULTS CRE colonisation and infections detection rates were 47/2875 (1.6%). Respiratory tract specimens were most frequently seen in 20/47 (42.6%) cases. Klebsiella pneumoniae was the main isolate in 35/47 (74.5%) CRE. As for carbapenemase, KPC-2-producing bacteria was most frequently detected in 38/47 (80.9%) Enterobacteriaceae. No underlying conditions (P = 0.004), pulmonary diseases (P = 0.018) and no antibiotics used prior to culture within 30 days (P 
doi_str_mv 10.1093/femspd/ftz034
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METHODS In a case-controlled retrospective study, we examined the prevalence, patient background and risk factors for CRE colonisation and infections, and all patient-derived CRE from January 2015 to January 2017. Isolated carbapenem-susceptible Enterobacteriaceae (CSE) from 2875 enrolled patients were randomly selected during the study. RESULTS CRE colonisation and infections detection rates were 47/2875 (1.6%). Respiratory tract specimens were most frequently seen in 20/47 (42.6%) cases. Klebsiella pneumoniae was the main isolate in 35/47 (74.5%) CRE. As for carbapenemase, KPC-2-producing bacteria was most frequently detected in 38/47 (80.9%) Enterobacteriaceae. No underlying conditions (P = 0.004), pulmonary diseases (P = 0.018) and no antibiotics used prior to culture within 30 days (P &lt; 0.001) were statistically significant between the CRE and CSE groups. CONCLUSION Klebsiellapneumoniae was the main isolate of CRE. The blaKPC-2 was the predominant CRE gene. Underlying conditions especially pulmonary diseases and antibiotics used prior to culture within 30 days represented key risk factors for acquisition of CRE.</description><identifier>ISSN: 2049-632X</identifier><identifier>EISSN: 2049-632X</identifier><identifier>DOI: 10.1093/femspd/ftz034</identifier><identifier>PMID: 31281931</identifier><language>eng</language><publisher>United States: Oxford University Press</publisher><subject>Academic Medical Centers ; Adolescent ; Adult ; Aged ; Aged, 80 and over ; Antibiotics ; Carbapenem-Resistant Enterobacteriaceae - isolation &amp; purification ; Carbapenemase ; Care and treatment ; Carrier State - epidemiology ; Carrier State - microbiology ; Case-Control Studies ; Child ; Child, Preschool ; China ; Colonization ; Control methods ; CRE bacteria ; Culture ; Development and progression ; Enterobacteriaceae ; Enterobacteriaceae - classification ; Enterobacteriaceae - isolation &amp; purification ; Enterobacteriaceae infections ; Enterobacteriaceae Infections - epidemiology ; Epidemiology ; Female ; Geography ; Health care facilities ; Humans ; Infant ; Infant, Newborn ; Infections ; Klebsiella ; Lung diseases ; Male ; Medical geography ; Medical research ; Medicine, Experimental ; Methods ; Middle Aged ; Prevalence ; Public health ; Public health administration ; Resistance factors ; Respiratory tract ; Retrospective Studies ; Risk analysis ; Risk Factors ; Statistical analysis ; Young Adult</subject><ispartof>Pathogens and Disease, 2019-06, Vol.77 (4), p.1</ispartof><rights>The Author(s) 2019. Published by Oxford University Press on behalf of FEMS. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2019</rights><rights>FEMS 2019.</rights><rights>COPYRIGHT 2019 Oxford University Press</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c421t-a2cdcb8c6a627c8a321b33afa38affd1916a4ceb6a38d45863df2b2c1e2ca7a53</citedby><cites>FETCH-LOGICAL-c421t-a2cdcb8c6a627c8a321b33afa38affd1916a4ceb6a38d45863df2b2c1e2ca7a53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,27905,27906</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31281931$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fang, Lili</creatorcontrib><creatorcontrib>Lu, Xiaohui</creatorcontrib><creatorcontrib>Xu, Heping</creatorcontrib><creatorcontrib>Ma, Xiaobo</creatorcontrib><creatorcontrib>Chen, Yilan</creatorcontrib><creatorcontrib>Liu, Yue</creatorcontrib><creatorcontrib>Hong, Guolin</creatorcontrib><creatorcontrib>Liang, Xianming</creatorcontrib><title>Epidemiology and risk factors for carbapenem-resistant Enterobacteriaceae colonisation and infections: case-controlled study from an academic medical center in a southern area of China</title><title>Pathogens and Disease</title><addtitle>Pathog Dis</addtitle><description>ABSTRACT OBJECTIVE While the emergence and spread of carbapenem-resistant Enterobacteriaceae (CRE) and related infections pose serious threats to global public health, the epidemiology and associated risk factors remain poorly understood and vary by geography. METHODS In a case-controlled retrospective study, we examined the prevalence, patient background and risk factors for CRE colonisation and infections, and all patient-derived CRE from January 2015 to January 2017. Isolated carbapenem-susceptible Enterobacteriaceae (CSE) from 2875 enrolled patients were randomly selected during the study. RESULTS CRE colonisation and infections detection rates were 47/2875 (1.6%). Respiratory tract specimens were most frequently seen in 20/47 (42.6%) cases. Klebsiella pneumoniae was the main isolate in 35/47 (74.5%) CRE. As for carbapenemase, KPC-2-producing bacteria was most frequently detected in 38/47 (80.9%) Enterobacteriaceae. No underlying conditions (P = 0.004), pulmonary diseases (P = 0.018) and no antibiotics used prior to culture within 30 days (P &lt; 0.001) were statistically significant between the CRE and CSE groups. CONCLUSION Klebsiellapneumoniae was the main isolate of CRE. The blaKPC-2 was the predominant CRE gene. Underlying conditions especially pulmonary diseases and antibiotics used prior to culture within 30 days represented key risk factors for acquisition of CRE.</description><subject>Academic Medical Centers</subject><subject>Adolescent</subject><subject>Adult</subject><subject>Aged</subject><subject>Aged, 80 and over</subject><subject>Antibiotics</subject><subject>Carbapenem-Resistant Enterobacteriaceae - isolation &amp; purification</subject><subject>Carbapenemase</subject><subject>Care and treatment</subject><subject>Carrier State - epidemiology</subject><subject>Carrier State - microbiology</subject><subject>Case-Control Studies</subject><subject>Child</subject><subject>Child, Preschool</subject><subject>China</subject><subject>Colonization</subject><subject>Control methods</subject><subject>CRE bacteria</subject><subject>Culture</subject><subject>Development and progression</subject><subject>Enterobacteriaceae</subject><subject>Enterobacteriaceae - classification</subject><subject>Enterobacteriaceae - isolation &amp; purification</subject><subject>Enterobacteriaceae infections</subject><subject>Enterobacteriaceae Infections - epidemiology</subject><subject>Epidemiology</subject><subject>Female</subject><subject>Geography</subject><subject>Health care facilities</subject><subject>Humans</subject><subject>Infant</subject><subject>Infant, Newborn</subject><subject>Infections</subject><subject>Klebsiella</subject><subject>Lung diseases</subject><subject>Male</subject><subject>Medical geography</subject><subject>Medical research</subject><subject>Medicine, Experimental</subject><subject>Methods</subject><subject>Middle Aged</subject><subject>Prevalence</subject><subject>Public health</subject><subject>Public health administration</subject><subject>Resistance factors</subject><subject>Respiratory tract</subject><subject>Retrospective Studies</subject><subject>Risk analysis</subject><subject>Risk Factors</subject><subject>Statistical analysis</subject><subject>Young Adult</subject><issn>2049-632X</issn><issn>2049-632X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkk1v1DAQhiMEolXpkSuyxIVL2thOvA63arV8SJW4gMQtmkzGrUtiB9s5LL-Mn4dDlg9xwRePR8-8mnk9RfGcV1e8auW1oSnOw7VJ3ypZPyrORVW3pZLi8-O_4rPiMsaHKh_dcL1TT4szyYXmreTnxffDbAearB_93ZGBG1iw8QszgMmHyIwPDCH0MJOjqQwUbUzgEju4RMH3GaNgAQmIYdZwNkKy3v1Uss4Qrq_4OotEKtG7FPw40sBiWoYjM8FPGWWAsDaBbKLBIowMadXPCgxY9Eu6p5DDQMC8Yft76-BZ8cTAGOnydF8Un94cPu7flbcf3r7f39yWWAueShA4YK9RgRI71CAF76UEA1KDMQNvuYIaqVc5MdSNVnIwohfISSDsoJEXxatNdw7-60IxdZONSOMIjvwSOyEaqYXOZmf05T_og1-Cy911QlY72fJGrdTVRt3BSF32yKeQ5z854B0Zm_M3qlJac9WoXFBuBRh8jIFMNwc7QTh2vOrWNei2Nei2Ncj8i1MbS5_9_E3_-vQ_I_ll_o_WD9OzwqE</recordid><startdate>20190601</startdate><enddate>20190601</enddate><creator>Fang, Lili</creator><creator>Lu, Xiaohui</creator><creator>Xu, Heping</creator><creator>Ma, Xiaobo</creator><creator>Chen, Yilan</creator><creator>Liu, Yue</creator><creator>Hong, Guolin</creator><creator>Liang, Xianming</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IAO</scope><scope>3V.</scope><scope>7T7</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope></search><sort><creationdate>20190601</creationdate><title>Epidemiology and risk factors for carbapenem-resistant Enterobacteriaceae colonisation and infections: case-controlled study from an academic medical center in a southern area of China</title><author>Fang, Lili ; Lu, Xiaohui ; Xu, Heping ; Ma, Xiaobo ; Chen, Yilan ; Liu, Yue ; Hong, Guolin ; Liang, Xianming</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c421t-a2cdcb8c6a627c8a321b33afa38affd1916a4ceb6a38d45863df2b2c1e2ca7a53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Academic Medical Centers</topic><topic>Adolescent</topic><topic>Adult</topic><topic>Aged</topic><topic>Aged, 80 and over</topic><topic>Antibiotics</topic><topic>Carbapenem-Resistant Enterobacteriaceae - isolation &amp; purification</topic><topic>Carbapenemase</topic><topic>Care and treatment</topic><topic>Carrier State - epidemiology</topic><topic>Carrier State - microbiology</topic><topic>Case-Control Studies</topic><topic>Child</topic><topic>Child, Preschool</topic><topic>China</topic><topic>Colonization</topic><topic>Control methods</topic><topic>CRE bacteria</topic><topic>Culture</topic><topic>Development and progression</topic><topic>Enterobacteriaceae</topic><topic>Enterobacteriaceae - classification</topic><topic>Enterobacteriaceae - isolation &amp; purification</topic><topic>Enterobacteriaceae infections</topic><topic>Enterobacteriaceae Infections - epidemiology</topic><topic>Epidemiology</topic><topic>Female</topic><topic>Geography</topic><topic>Health care facilities</topic><topic>Humans</topic><topic>Infant</topic><topic>Infant, Newborn</topic><topic>Infections</topic><topic>Klebsiella</topic><topic>Lung diseases</topic><topic>Male</topic><topic>Medical geography</topic><topic>Medical research</topic><topic>Medicine, Experimental</topic><topic>Methods</topic><topic>Middle Aged</topic><topic>Prevalence</topic><topic>Public health</topic><topic>Public health administration</topic><topic>Resistance factors</topic><topic>Respiratory tract</topic><topic>Retrospective Studies</topic><topic>Risk analysis</topic><topic>Risk Factors</topic><topic>Statistical analysis</topic><topic>Young Adult</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fang, Lili</creatorcontrib><creatorcontrib>Lu, Xiaohui</creatorcontrib><creatorcontrib>Xu, Heping</creatorcontrib><creatorcontrib>Ma, Xiaobo</creatorcontrib><creatorcontrib>Chen, Yilan</creatorcontrib><creatorcontrib>Liu, Yue</creatorcontrib><creatorcontrib>Hong, Guolin</creatorcontrib><creatorcontrib>Liang, Xianming</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale Academic OneFile</collection><collection>ProQuest Central (Corporate)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Health &amp; 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METHODS In a case-controlled retrospective study, we examined the prevalence, patient background and risk factors for CRE colonisation and infections, and all patient-derived CRE from January 2015 to January 2017. Isolated carbapenem-susceptible Enterobacteriaceae (CSE) from 2875 enrolled patients were randomly selected during the study. RESULTS CRE colonisation and infections detection rates were 47/2875 (1.6%). Respiratory tract specimens were most frequently seen in 20/47 (42.6%) cases. Klebsiella pneumoniae was the main isolate in 35/47 (74.5%) CRE. As for carbapenemase, KPC-2-producing bacteria was most frequently detected in 38/47 (80.9%) Enterobacteriaceae. No underlying conditions (P = 0.004), pulmonary diseases (P = 0.018) and no antibiotics used prior to culture within 30 days (P &lt; 0.001) were statistically significant between the CRE and CSE groups. CONCLUSION Klebsiellapneumoniae was the main isolate of CRE. The blaKPC-2 was the predominant CRE gene. Underlying conditions especially pulmonary diseases and antibiotics used prior to culture within 30 days represented key risk factors for acquisition of CRE.</abstract><cop>United States</cop><pub>Oxford University Press</pub><pmid>31281931</pmid><doi>10.1093/femspd/ftz034</doi></addata></record>
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subjects Academic Medical Centers
Adolescent
Adult
Aged
Aged, 80 and over
Antibiotics
Carbapenem-Resistant Enterobacteriaceae - isolation & purification
Carbapenemase
Care and treatment
Carrier State - epidemiology
Carrier State - microbiology
Case-Control Studies
Child
Child, Preschool
China
Colonization
Control methods
CRE bacteria
Culture
Development and progression
Enterobacteriaceae
Enterobacteriaceae - classification
Enterobacteriaceae - isolation & purification
Enterobacteriaceae infections
Enterobacteriaceae Infections - epidemiology
Epidemiology
Female
Geography
Health care facilities
Humans
Infant
Infant, Newborn
Infections
Klebsiella
Lung diseases
Male
Medical geography
Medical research
Medicine, Experimental
Methods
Middle Aged
Prevalence
Public health
Public health administration
Resistance factors
Respiratory tract
Retrospective Studies
Risk analysis
Risk Factors
Statistical analysis
Young Adult
title Epidemiology and risk factors for carbapenem-resistant Enterobacteriaceae colonisation and infections: case-controlled study from an academic medical center in a southern area of China
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