A Deep Learning Convolutional Neural Network Can Recognize Common Patterns of Injury in Gastric Pathology

Most deep learning (DL) studies have focused on neoplastic pathology, with the realm of inflammatory pathology remaining largely untouched. To investigate the use of DL for nonneoplastic gastric biopsies. Gold standard diagnoses were blindly established by 2 gastrointestinal pathologists. For phase...

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Veröffentlicht in:Archives of pathology & laboratory medicine (1976) 2020-03, Vol.144 (3), p.370-378
Hauptverfasser: Martin, David R, Hanson, Joshua A, Gullapalli, Rama R, Schultz, Fred A, Sethi, Aisha, Clark, Douglas P
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container_end_page 378
container_issue 3
container_start_page 370
container_title Archives of pathology & laboratory medicine (1976)
container_volume 144
creator Martin, David R
Hanson, Joshua A
Gullapalli, Rama R
Schultz, Fred A
Sethi, Aisha
Clark, Douglas P
description Most deep learning (DL) studies have focused on neoplastic pathology, with the realm of inflammatory pathology remaining largely untouched. To investigate the use of DL for nonneoplastic gastric biopsies. Gold standard diagnoses were blindly established by 2 gastrointestinal pathologists. For phase 1, 300 classic cases (100 normal, 100 , 100 reactive gastropathy) that best displayed the desired pathology were scanned and annotated for DL analysis. A total of 70% of the cases for each group were selected for the training set, and 30% were included in the test set. The software assigned colored labels to the test biopsies, which corresponded to the area of the tissue assigned a diagnosis by the DL algorithm, termed area distribution (AD). For Phase 2, an additional 106 consecutive nonclassical gastric biopsies from our archives were tested in the same fashion. For Phase 1, receiver operating curves showed near perfect agreement with the gold standard diagnoses at an AD percentage cutoff of 50% for normal (area under the curve [AUC] = 99.7%) and (AUC = 100%), and 40% for reactive gastropathy (AUC = 99.9%). Sensitivity/specificity pairings were as follows: normal (96.7%, 86.7%), (100%, 98.3%), and reactive gastropathy (96.7%, 96.7%). For phase 2, receiver operating curves were slightly less discriminatory, with optimal AD cutoffs reduced to 40% across diagnostic groups. The AUCs were 91.9% for normal, 100% for , and 94.0% for reactive gastropathy. Sensitivity/specificity parings were as follows: normal (73.7%, 79.6%), (95.7%, 100%), reactive gastropathy (100%, 62.5%). A convolutional neural network can serve as an effective screening tool/diagnostic aid for gastritis.
doi_str_mv 10.5858/arpa.2019-0004-OA
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source Allen Press Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals
subjects Algorithms
Analysis
Anti-inflammatory agents
Artificial neural networks
Bile
Breast
Cable television broadcasting industry
Chronic infection
Data processing
Deep learning
Drug abuse
Edema
Epidermal growth factor
Epithelium
ErbB-2 protein
Estrogen receptors
Ethanol
Gastritis
Germinal centers
Helicobacter pylori
Hyperplasia
Inflammation
International economic relations
Lamina propria
Leukocytes (neutrophilic)
Lymph nodes
Lymphatic system
Medical research
Metastases
Metastasis
Mitosis
Mucin
Mucosa
Neoplasia
Neural networks
Nonsteroidal anti-inflammatory drugs
Organisms
Pathology
Progesterone
Regeneration
Smooth muscle
Software
Training
Ulcers
title A Deep Learning Convolutional Neural Network Can Recognize Common Patterns of Injury in Gastric Pathology
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