Phosphorylation mapping of laminin α1-chain: Kinases in association with active sites

[Display omitted] •Identification of responsible kinases for experimentally observed phospho-sites.•Role of ecto-kinases (PKA,PKC,CKII) in the phosphorylation of laminin α1-chain.•Association of six cancer-related active sites with specific kinases.•Possible association of ecto-phosphorylation with...

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Veröffentlicht in:Computational biology and chemistry 2019-06, Vol.80, p.480-497
Hauptverfasser: Galliou, Panagiota Angeliki, Verrou, Kleio-Maria, Koliakos, George
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creator Galliou, Panagiota Angeliki
Verrou, Kleio-Maria
Koliakos, George
description [Display omitted] •Identification of responsible kinases for experimentally observed phospho-sites.•Role of ecto-kinases (PKA,PKC,CKII) in the phosphorylation of laminin α1-chain.•Association of six cancer-related active sites with specific kinases.•Possible association of ecto-phosphorylation with cancer mechanisms. Laminin­111 is a trimeric glycoprotein of the extracellular matrix (ECM) that holds a significant role in cell adhesion, migration and differentiation. Laminin­111 is the most studied laminin isoform, composed of three chains; α1, β1 and γ1. Phosphorylation is the most common eukaryotic post ­ translational modification and has regulatory effect on protein function. Using bioinformatic tools we computationally predicted all the possible phosphorylation sites on human laminin α1-chain sequence (LAMA1) according to kinases binding motifs. Thus, we predicted, for the first time, the possibly responsible kinases for fifteen of the nineteen already published experimentally observed phosphorylated residues in LAMA1. Searching the literature extensively, we recorded all the known functional sites (active sites) in LAMA1. We combined the experimentally observed and predicted phosphorylated residues as well as the active sites in LAMA1, generating an analytic phosphorylation map of human laminin α1-chain, which is useful for further analysis. Our results indicated fourteen kinases that might be important for the phosphorylation of human laminin α1-chain, out of which three kinases with reported ecto-phosphorylation activity (PKA, PKC and CKII) were suggested to have a more significant role. Six cancer associated-active sites were correlated with kinases, three out which were correlated with only the above ecto ­ kinases.
doi_str_mv 10.1016/j.compbiolchem.2019.04.012
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Laminin­111 is a trimeric glycoprotein of the extracellular matrix (ECM) that holds a significant role in cell adhesion, migration and differentiation. Laminin­111 is the most studied laminin isoform, composed of three chains; α1, β1 and γ1. Phosphorylation is the most common eukaryotic post ­ translational modification and has regulatory effect on protein function. Using bioinformatic tools we computationally predicted all the possible phosphorylation sites on human laminin α1-chain sequence (LAMA1) according to kinases binding motifs. Thus, we predicted, for the first time, the possibly responsible kinases for fifteen of the nineteen already published experimentally observed phosphorylated residues in LAMA1. Searching the literature extensively, we recorded all the known functional sites (active sites) in LAMA1. We combined the experimentally observed and predicted phosphorylated residues as well as the active sites in LAMA1, generating an analytic phosphorylation map of human laminin α1-chain, which is useful for further analysis. Our results indicated fourteen kinases that might be important for the phosphorylation of human laminin α1-chain, out of which three kinases with reported ecto-phosphorylation activity (PKA, PKC and CKII) were suggested to have a more significant role. Six cancer associated-active sites were correlated with kinases, three out which were correlated with only the above ecto ­ kinases.</description><identifier>ISSN: 1476-9271</identifier><identifier>EISSN: 1476-928X</identifier><identifier>DOI: 10.1016/j.compbiolchem.2019.04.012</identifier><identifier>PMID: 31174160</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Active sites ; Cancer ; Kinases ; Laminin α1-chain ; Phosphorylation</subject><ispartof>Computational biology and chemistry, 2019-06, Vol.80, p.480-497</ispartof><rights>2019</rights><rights>Copyright © 2019. 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Laminin­111 is a trimeric glycoprotein of the extracellular matrix (ECM) that holds a significant role in cell adhesion, migration and differentiation. Laminin­111 is the most studied laminin isoform, composed of three chains; α1, β1 and γ1. Phosphorylation is the most common eukaryotic post ­ translational modification and has regulatory effect on protein function. Using bioinformatic tools we computationally predicted all the possible phosphorylation sites on human laminin α1-chain sequence (LAMA1) according to kinases binding motifs. Thus, we predicted, for the first time, the possibly responsible kinases for fifteen of the nineteen already published experimentally observed phosphorylated residues in LAMA1. Searching the literature extensively, we recorded all the known functional sites (active sites) in LAMA1. We combined the experimentally observed and predicted phosphorylated residues as well as the active sites in LAMA1, generating an analytic phosphorylation map of human laminin α1-chain, which is useful for further analysis. Our results indicated fourteen kinases that might be important for the phosphorylation of human laminin α1-chain, out of which three kinases with reported ecto-phosphorylation activity (PKA, PKC and CKII) were suggested to have a more significant role. 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subjects Active sites
Cancer
Kinases
Laminin α1-chain
Phosphorylation
title Phosphorylation mapping of laminin α1-chain: Kinases in association with active sites
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